CN182127

Overview
NameCN182127
Unique NameCN182127
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length522
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6234 contig Csv1_Contig6234:58..579. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN182127 vs. ExPASy Swiss-Prot
Match: ACBP_RABIT (Acyl-CoA-binding protein OS=Oryctolagus cuniculus GN=DBI PE=3 SV=3)

HSP 1 Score: 91.6633 bits (226), Expect = 2.303e-18
Identity = 41/85 (48.24%), Postives = 58/85 (68.24%), Query Frame = 1
Query:   58 QEEFEEHAEKAKTLPESTTNENKLILYGLYKQATVGPVNTNRPGMFNMRDRAKWDAWKAVEGKSKEEAMSDYITKVKQLQEEAGV 312
            Q EFE+ AE+ K L     +   L +Y  YKQATVG VNT RPGM +++ +AKWDAW  ++G SKE AM  Y+ KV++L+++ G+
Sbjct:    3 QAEFEKAAEEVKNLKTKPADAEMLFIYSHYKQATVGDVNTERPGMLDLKGKAKWDAWNELKGTSKESAMRAYVDKVEELKQKYGI 87          
BLAST of CN182127 vs. ExPASy Swiss-Prot
Match: ACBP_MOUSE (Acyl-CoA-binding protein OS=Mus musculus GN=Dbi PE=1 SV=2)

HSP 1 Score: 90.5077 bits (223), Expect = 5.131e-18
Identity = 39/85 (45.88%), Postives = 60/85 (70.59%), Query Frame = 1
Query:   58 QEEFEEHAEKAKTLPESTTNENKLILYGLYKQATVGPVNTNRPGMFNMRDRAKWDAWKAVEGKSKEEAMSDYITKVKQLQEEAGV 312
            Q EF++ AE+ K L    T+E  L +Y  +KQATVG VNT+RPG+ +++ +AKWD+W  ++G SKE AM  Y+ KV +L+++ G+
Sbjct:    3 QAEFDKAAEEVKRLKTQPTDEEMLFIYSHFKQATVGDVNTDRPGLLDLKGKAKWDSWNKLKGTSKESAMKTYVEKVDELKKKYGI 87          
BLAST of CN182127 vs. ExPASy Swiss-Prot
Match: ACBP_RAT (Acyl-CoA-binding protein OS=Rattus norvegicus GN=Dbi PE=1 SV=3)

HSP 1 Score: 90.1225 bits (222), Expect = 6.702e-18
Identity = 38/85 (44.71%), Postives = 61/85 (71.76%), Query Frame = 1
Query:   58 QEEFEEHAEKAKTLPESTTNENKLILYGLYKQATVGPVNTNRPGMFNMRDRAKWDAWKAVEGKSKEEAMSDYITKVKQLQEEAGV 312
            Q +F++ AE+ K L    T+E  L +Y  +KQATVG VNT+RPG+ +++ +AKWD+W  ++G SKE AM  Y+ KV++L+++ G+
Sbjct:    3 QADFDKAAEEVKRLKTQPTDEEMLFIYSHFKQATVGDVNTDRPGLLDLKGKAKWDSWNKLKGTSKENAMKTYVEKVEELKKKYGI 87          
BLAST of CN182127 vs. ExPASy Swiss-Prot
Match: ACBP_CHICK (Acyl-CoA-binding protein OS=Gallus gallus GN=DBI PE=1 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 6.702e-18
Identity = 40/82 (48.78%), Postives = 59/82 (71.95%), Query Frame = 1
Query:   67 FEEHAEKAKTLPESTTNENKLILYGLYKQATVGPVNTNRPGMFNMRDRAKWDAWKAVEGKSKEEAMSDYITKVKQLQEEAGV 312
            F++ AE+ K L    T++  L +Y  YKQATVG VNT+RPGM + + +AKWDAW A++G SKE+AM  Y+ KV++L+ + G+
Sbjct:    5 FQKAAEEVKELKSQPTDQEMLDVYSHYKQATVGDVNTDRPGMLDFKGKAKWDAWNALKGMSKEDAMKAYVAKVEELKGKYGI 86          
BLAST of CN182127 vs. ExPASy Swiss-Prot
Match: ACBP_CANFA (Acyl-CoA-binding protein OS=Canis familiaris GN=DBI PE=1 SV=2)

HSP 1 Score: 89.7373 bits (221), Expect = 8.752e-18
Identity = 39/85 (45.88%), Postives = 58/85 (68.24%), Query Frame = 1
Query:   58 QEEFEEHAEKAKTLPESTTNENKLILYGLYKQATVGPVNTNRPGMFNMRDRAKWDAWKAVEGKSKEEAMSDYITKVKQLQEEAGV 312
            Q EF++ AE  K L     ++  L +Y  YKQATVG +NT RPG+ ++R +AKWDAW  ++G SKE+AM  Y+ KV+ L+++ G+
Sbjct:    3 QAEFDKAAEDVKHLKTKPADDEMLYIYSHYKQATVGDINTERPGLLDLRGKAKWDAWNQLKGTSKEDAMKAYVNKVEDLKKKYGI 87          
BLAST of CN182127 vs. ExPASy Swiss-Prot
Match: ACBP_ANAPL (Acyl-CoA-binding protein OS=Anas platyrhynchos GN=DBI PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 9.677e-17
Identity = 40/85 (47.06%), Postives = 57/85 (67.06%), Query Frame = 1
Query:   58 QEEFEEHAEKAKTLPESTTNENKLILYGLYKQATVGPVNTNRPGMFNMRDRAKWDAWKAVEGKSKEEAMSDYITKVKQLQEEAGV 312
            Q +F+E AE+ K L    T+E    LYG YKQATVG +N   PGM +++ +AKW+AW   +G SKE+AM+ YI+K K + E+ G+
Sbjct:   19 QADFDEAAEEVKKLKTRPTDEELKELYGFYKQATVGDINIECPGMLDLKGKAKWEAWNLKKGISKEDAMNAYISKAKTMVEKYGI 103          
BLAST of CN182127 vs. ExPASy Swiss-Prot
Match: ACBP3_CAEEL (Acyl-CoA-binding protein homolog 3 OS=Caenorhabditis elegans GN=acbp-3 PE=2 SV=2)

HSP 1 Score: 83.1889 bits (204), Expect = 8.192e-16
Identity = 42/98 (42.86%), Postives = 65/98 (66.33%), Query Frame = 1
Query:   49 MGLQEEFEEHAEKAKTLPES----TTNENKLILYGLYKQATVGPVNTNRPGMFNMRDRAKWDAWKAVEGKSKEEAMSDYITKVK----QLQEEAGVSA 318
            M LQE+F+   E  + LP++    T+N+ KL  Y L+KQA++G VNT+RPG+F++ +R KWD+WK +EG S++EA   YI  +     ++ EE  V+A
Sbjct:    1 MSLQEKFDAAVEIIQKLPKTGPVATSNDQKLTFYSLFKQASIGDVNTDRPGIFSIIERKKWDSWKELEGVSQDEAKERYIKALNDMFDKIAEELDVAA 98          
BLAST of CN182127 vs. ExPASy Swiss-Prot
Match: ACBP_RANRI (Acyl-CoA-binding protein homolog OS=Rana ridibunda PE=1 SV=2)

HSP 1 Score: 82.8037 bits (203), Expect = 1.070e-15
Identity = 39/88 (44.32%), Postives = 57/88 (64.77%), Query Frame = 1
Query:   49 MGLQEEFEEHAEKAKTLPESTTNENKLILYGLYKQATVGPVNTNRPGMFNMRDRAKWDAWKAVEGKSKEEAMSDYITKVKQLQEEAGV 312
            M  Q +F++ A   K L    T++    LYGLYKQ+TVG +N   PGM +++ +AKWDAW   +G SKE+AMS Y++K  +L E+ G+
Sbjct:    1 MSPQADFDKAAGDVKKLKTKPTDDELKELYGLYKQSTVGDINIECPGMLDLKGKAKWDAWNLKKGLSKEDAMSAYVSKAHELIEKYGL 88          
BLAST of CN182127 vs. ExPASy Swiss-Prot
Match: ACBP2_SACPS (Acyl-CoA-binding protein 2 OS=Saccharomyces pastorianus GN=ACB2 PE=1 SV=2)

HSP 1 Score: 82.8037 bits (203), Expect = 1.070e-15
Identity = 38/76 (50.00%), Postives = 52/76 (68.42%), Query Frame = 1
Query:   67 FEEHAEKAKTLPESTTNENKLILYGLYKQATVGPVNTNRPGMFNMRDRAKWDAWKAVEGKSKEEAMSDYITKVKQL 294
            FEE A+    LP   + +  L LYGLYKQATVG  +  +PG+FNM+DR KW+AW+ ++GKS+E+A  +YI  V  L
Sbjct:    6 FEEKAKAVNELPTKPSTDELLELYGLYKQATVGDNDKEKPGIFNMKDRYKWEAWEDLKGKSQEDAEKEYIAYVDNL 81          
BLAST of CN182127 vs. ExPASy Swiss-Prot
Match: ACBP2_SACMO (Acyl-CoA-binding protein 2 OS=Saccharomyces monacensis GN=ACB2 PE=3 SV=2)

HSP 1 Score: 82.8037 bits (203), Expect = 1.070e-15
Identity = 38/76 (50.00%), Postives = 52/76 (68.42%), Query Frame = 1
Query:   67 FEEHAEKAKTLPESTTNENKLILYGLYKQATVGPVNTNRPGMFNMRDRAKWDAWKAVEGKSKEEAMSDYITKVKQL 294
            FEE A+    LP   + +  L LYGLYKQATVG  +  +PG+FNM+DR KW+AW+ ++GKS+E+A  +YI  V  L
Sbjct:    6 FEEKAKAVNELPTKPSTDELLELYGLYKQATVGDNDKEKPGIFNMKDRYKWEAWEDLKGKSQEDAEKEYIAYVDNL 81          
The following BLAST results are available for this feature:
BLAST of CN182127 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 42
Match NameE-valueIdentityDescription
ACBP_RABIT2.303e-1848.24Acyl-CoA-binding protein OS=Oryctolagus cuniculus ... [more]
ACBP_MOUSE5.131e-1845.88Acyl-CoA-binding protein OS=Mus musculus GN=Dbi PE... [more]
ACBP_RAT6.702e-1844.71Acyl-CoA-binding protein OS=Rattus norvegicus GN=D... [more]
ACBP_CHICK6.702e-1848.78Acyl-CoA-binding protein OS=Gallus gallus GN=DBI P... [more]
ACBP_CANFA8.752e-1845.88Acyl-CoA-binding protein OS=Canis familiaris GN=DB... [more]
ACBP_ANAPL9.677e-1747.06Acyl-CoA-binding protein OS=Anas platyrhynchos GN=... [more]
ACBP3_CAEEL8.192e-1642.86Acyl-CoA-binding protein homolog 3 OS=Caenorhabdit... [more]
ACBP_RANRI1.070e-1544.32Acyl-CoA-binding protein homolog OS=Rana ridibunda... [more]
ACBP2_SACPS1.070e-1550.00Acyl-CoA-binding protein 2 OS=Saccharomyces pastor... [more]
ACBP2_SACMO1.070e-1550.00Acyl-CoA-binding protein 2 OS=Saccharomyces monace... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0001P21_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001P21, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN182127 ID=CN182127; Name=CN182127; organism=Citrus sinensis; type=EST; length=522bp
GCACATCTCAATTCTCAAATCTCAGAGAAAAACAAAAGAAAGGGGGAAAT
GGGTTTGCAGGAGGAATTTGAGGAGCATGCTGAGAAAGCAAAGACCCTGC
CAGAGTCGACAACAAACGAAAACAAGCTTATCCTTTATGGTCTCTACAAG
CAAGCCACTGTTGGACCAGTAAACACAAACAGACCTGGAATGTTTAACAT
GAGGGACAGAGCTAAGTGGGATGCATGGAAGGCTGTCGAAGGGAAATCTA
AGGAGGAAGCAATGAGTGACTACATTACCAAGGTAAAGCAGTTGCAGGAG
GAAGCTGGTGTTTCTGCCTGACCTTCCGCTGTATGCTTATCTTCCAAATC
TCATGATTCGGAGAAGTCAAAATAAGTTGAAAAAGGTTTAAGCTGTTTGC
AAACTGGTTCTATTGATGTTACATCTGAATTATGTCTCTGTTTAAATTAT
GTATGATATGTACTTTGGTTAAAGTCCATTGAAATGATTAAGTAGTTTGC
GTTATCTTGGGAAAAAAAAAAA
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