CN182123

Overview
NameCN182123
Unique NameCN182123
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length658
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN182123 vs. ExPASy Swiss-Prot
Match: FPPS_KLULA (Farnesyl pyrophosphate synthetase OS=Kluyveromyces lactis GN=FPS1 PE=3 SV=1)

HSP 1 Score: 197.208 bits (500), Expect = 6.243e-50
Identity = 103/187 (55.08%), Postives = 134/187 (71.66%), Query Frame = 2
Query:  107 MSDLKSRFIEVYGVLKQELLNDPA-FEFDHDSRQWVDRMLDYNVPGGKLNRGLSVVDSYRLLKEGK---ELTDDEFFLSSALGWCIEWLQAYFLVLDDIMDGSHTRRGQPCWFRVPKVGMIAANDGVLLRNHISRILKNHFRDKPYYVDLLDLFNEVEFQTASGQMIDLITTIEAEKDLSKYSLPLH 655
            MSD +++F+EV+  L QEL +  A +    ++ +W ++ L+YN PGGKLNRGLSVVD+Y LLK  K   EL+ +E+   + LGWCIE LQAYFLV DD+MD S TRRGQPCW++V  VG IA ND  +L   I  +LK HFR +PYYVDLL+LF++V FQT  GQ++DLIT  E + DLSK+SL  H
Sbjct:    1 MSDNRAQFLEVFPSLVQELRDILAGYGMPEEAIEWYEKSLNYNTPGGKLNRGLSVVDTYALLKGYKSVSELSAEEYKKVAILGWCIELLQAYFLVADDMMDQSITRRGQPCWYKVENVGDIAINDAFMLEGAIYCLLKKHFRTEPYYVDLLELFHDVTFQTELGQLLDLITAPEDKVDLSKFSLEKH 187          
BLAST of CN182123 vs. ExPASy Swiss-Prot
Match: FPPS_YEAST (Farnesyl pyrophosphate synthetase OS=Saccharomyces cerevisiae GN=FPP1 PE=1 SV=2)

HSP 1 Score: 184.882 bits (468), Expect = 3.206e-46
Identity = 94/182 (51.65%), Postives = 128/182 (70.33%), Query Frame = 2
Query:  119 KSRFIEVYGVLKQEL-LNDPAFEFDHDSRQWVDRMLDYNVPGGKLNRGLSVVDSYRLL--KEGKELTDDEFFLSSALGWCIEWLQAYFLVLDDIMDGSHTRRGQPCWFRVPKVGMIAANDGVLLRNHISRILKNHFRDKPYYVDLLDLFNEVEFQTASGQMIDLITTIEAEKDLSKYSLPLH 655
            + RF+ V+  L +EL  +  A+    ++  W    L+YN PGGKLNRGLSVVD+Y +L  K  ++L  +E+   + LGWCIE LQAYFLV DD+MD S TRRGQPCW++VP+VG IA ND  +L   I ++LK+HFR++ YY+D+ +LF+EV FQT  GQ++DLIT  E + DLSK+SL  H
Sbjct:    9 RERFLNVFPKLVEELNASLLAYGMPKEACDWYAHSLNYNTPGGKLNRGLSVVDTYAILSNKTVEQLGQEEYEKVAILGWCIELLQAYFLVADDMMDKSITRRGQPCWYKVPEVGEIAINDAFMLEAAIYKLLKSHFRNEKYYIDITELFHEVTFQTELGQLMDLITAPEDKVDLSKFSLKKH 190          
BLAST of CN182123 vs. ExPASy Swiss-Prot
Match: FPPS_SCHPO (Farnesyl pyrophosphate synthetase OS=Schizosaccharomyces pombe GN=fps1 PE=1 SV=1)

HSP 1 Score: 160.614 bits (405), Expect = 6.476e-39
Identity = 82/182 (45.05%), Postives = 113/182 (62.09%), Query Frame = 2
Query:  113 DLKSRFIEVYGVLKQELLND-PAFEFDHDSRQWVDRMLDYNVPGGKLNRGLSVVDSYRLLKEGKELTDDEFFLSSALGWCIEWLQAYFLVLDDIMDGSHTRRGQPCWFRVPKVGMIAANDGVLLRNHISRILKNHFRDKPYYVDLLDLFNEVEFQTASGQMIDLITTIEAEKDLSKYSLPLH 655
            D +++F     V   E++N         D  +W    L +N  GGK NRGLSV+DSY +L  G  L +  +  ++ LGW +E LQ++FL+ DDIMD S TRRGQPCW+ +P VG IA ND  ++ + I  +LK HFR +  YVDL++LF++V FQT  GQ +DL+T  E   DLSK+SL  H
Sbjct:    5 DKRAKFESALPVFVDEIVNYLKTINIPDDVTEWYKNSLFHNTLGGKYNRGLSVIDSYEILL-GHPLDEAAYMKAAVLGWMVELLQSFFLIADDIMDASKTRRGQPCWYLMPGVGNIAINDAFMVESAIYFLLKKHFRQESCYVDLIELFHDVTFQTELGQQLDLLTAPEDSVDLSKFSLQKH 185          
BLAST of CN182123 vs. ExPASy Swiss-Prot
Match: FPPS_NEUCR (Farnesyl pyrophosphate synthetase OS=Neurospora crassa GN=fpp PE=3 SV=2)

HSP 1 Score: 158.688 bits (400), Expect = 2.461e-38
Identity = 85/182 (46.70%), Postives = 116/182 (63.74%), Query Frame = 2
Query:  104 KMSDLKSRFIEVYGVLKQELLN-DPAFEFDHDSRQWVDRMLDYNVPGGKLNRGLSVVDSYRLLKEGKELTDDEFFLSSALGWCIEWLQAYFLVLDDIMDGSHTRRGQPCWFRVPKVGMIAANDGVLLRNHISRILKNHFRDKPYYVDLLDLFNEVEFQTASGQMIDLITTIEAEKDLSKYSL 646
            K + LK  F  V+  L++ LL    A++       W  + L+ N  GGK NRG+SV DS  +L  G+ LT++E+F ++ LGW  E LQA+FLV DDIMD S TRRG+PCW+R   VGM+A ND  +L + I  +LK +FR  P YVD L+LF+EV FQT  GQ+ DL+T  E + DL  +S+
Sbjct:    3 KTTTLKE-FESVFPKLEEALLEYAKAYKLPEQMLSWYKQSLEVNTLGGKCNRGMSVPDSASILL-GRPLTEEEYFQAATLGWMTELLQAFFLVSDDIMDSSITRRGKPCWYRQEGVGMVAINDAFMLESAIYTLLKKYFRSHPRYVDFLELFHEVTFQTEMGQLCDLLTAPEDKVDLDNFSM 182          
BLAST of CN182123 vs. ExPASy Swiss-Prot
Match: FPPS_GIBFU (Farnesyl pyrophosphate synthetase OS=Gibberella fujikuroi GN=FPPS PE=3 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 7.160e-38
Identity = 83/174 (47.70%), Postives = 111/174 (63.79%), Query Frame = 2
Query:  128 FIEVYGVLKQELLNDP-AFEFDHDSRQWVDRMLDYNVPGGKLNRGLSVVDSYRLLKEGKELTDDEFFLSSALGWCIEWLQAYFLVLDDIMDGSHTRRGQPCWFRVPKVGMIAANDGVLLRNHISRILKNHFRDKPYYVDLLDLFNEVEFQTASGQMIDLITTIEAEKDLSKYSL 646
            F  VY  L++ LL+   +++   +   W  R L+ N  GGK NRG+SV DS  LL E K LT++++F ++ LGW  E LQA+FLV DDIMD S TRRGQPCW+R   VGMIA ND  +L + I  +LK +FR  P Y DL++ F+E  FQT  GQ+ DL+T  E   +L  +SL
Sbjct:   10 FNSVYPKLEEALLDHARSYKLPQEQLDWYKRSLEVNPLGGKCNRGMSVPDSVSLLLE-KPLTEEQYFQAATLGWMTELLQAFFLVSDDIMDSSITRRGQPCWYRQEGVGMIAINDAFMLESAIYTLLKKYFRSHPAYFDLIESFHETTFQTELGQLCDLLTAPEDNVNLDNFSL 182          
BLAST of CN182123 vs. ExPASy Swiss-Prot
Match: FPPS_RAT (Farnesyl pyrophosphate synthetase OS=Rattus norvegicus GN=Fdps PE=2 SV=2)

HSP 1 Score: 148.673 bits (374), Expect = 2.547e-35
Identity = 74/172 (43.02%), Postives = 113/172 (65.70%), Query Frame = 2
Query:  128 FIEVYGVLKQELLNDPAFEFDHDSRQWVDRMLDYNVPGGKLNRGLSVVDSYRLLKEGKELTDDEFFLSSALGWCIEWLQAYFLVLDDIMDGSHTRRGQPCWFRVPKVGMIAANDGVLLRNHISRILKNHFRDKPYYVDLLDLFNEVEFQTASGQMIDLITTIEAEKDLSKYS 643
            F ++  VL ++ L  P      D+   +  +L+YN  GGK NRGL+VV +++ L E ++   +    +  +GWC+E LQA+FLVLDDIMD S+TRRGQ CW++ P +G+ A ND +LL   I R+LK + R++PYY++LL+LF +  +QT  GQ +DLIT  + + DL +Y+
Sbjct:   21 FSQIVKVLTEDELGHPE---KGDAITRIKEVLEYNTVGGKYNRGLTVVQTFQELVEPRKQDAESLQRALTVGWCVELLQAFFLVLDDIMDSSYTRRGQICWYQKPGIGLDAINDALLLEAAIYRLLKFYCREQPYYLNLLELFLQSSYQTEIGQTLDLITAPQGQVDLGRYT 189          
BLAST of CN182123 vs. ExPASy Swiss-Prot
Match: FPPS_BOVIN (Farnesyl pyrophosphate synthetase OS=Bos taurus GN=FDPS PE=1 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 1.651e-34
Identity = 75/177 (42.37%), Postives = 110/177 (62.15%), Query Frame = 2
Query:  113 DLKSRFIEVYGVLKQELLNDPAFEFDHDSRQWVDRMLDYNVPGGKLNRGLSVVDSYRLLKEGKELTDDEFFLSSALGWCIEWLQAYFLVLDDIMDGSHTRRGQPCWFRVPKVGMIAANDGVLLRNHISRILKNHFRDKPYYVDLLDLFNEVEFQTASGQMIDLITTIEAEKDLSKYS 643
            D    F ++  VL +E +  P      D+   +  +L+YN  GGK NRGL+VV ++R L E  +   D    +  +GWC+E LQA+FLV DDIMD S TRRGQ CW++ P +G+ A ND  LL + I R+LK + R++PYY+DL++LF +  +QT  GQ +DLIT  +   DL +++
Sbjct:   16 DFIQHFSQIVKVLTEEDIGHPEIG---DAITRLKEVLEYNAIGGKYNRGLTVVITFRELVEPGKQDPDSLQRALTVGWCVELLQAFFLVSDDIMDSSLTRRGQTCWYQKPGIGLDAINDAFLLESSIYRLLKLYCREQPYYLDLIELFLQSSYQTEIGQTLDLITAPQGNVDLGRFT 189          
BLAST of CN182123 vs. ExPASy Swiss-Prot
Match: FPPS_CHICK (Farnesyl pyrophosphate synthetase OS=Gallus gallus GN=FDPS PE=1 SV=2)

HSP 1 Score: 144.436 bits (363), Expect = 4.803e-34
Identity = 72/142 (50.70%), Postives = 95/142 (66.90%), Query Frame = 2
Query:  218 MLDYNVPGGKLNRGLSVVDSYRLLKEGKELTDDEFFLSSALGWCIEWLQAYFLVLDDIMDGSHTRRGQPCWFRVPKVGMIAANDGVLLRNHISRILKNHFRDKPYYVDLLDLFNEVEFQTASGQMIDLITTIEAEKDLSKYS 643
            +L YN PGGK NRGL+VV +YR L    +   +    + A+GWCIE  QA+FLV DDIMD S TRRGQ CW++   VG+ A ND  LL + + R+LK + R +PYYV LL+LF +  +QT  GQM+DLIT   ++ DLS +S
Sbjct:   62 VLQYNAPGGKCNRGLTVVAAYRELSGPGQKDAESLRCALAVGWCIELFQAFFLVADDIMDQSLTRRGQLCWYKKEGVGLDAINDSFLLESSVYRVLKKYCRQRPYYVHLLELFLQTAYQTELGQMLDLITAPVSKVDLSHFS 203          
BLAST of CN182123 vs. ExPASy Swiss-Prot
Match: FPPS_MOUSE (Farnesyl pyrophosphate synthetase OS=Mus musculus GN=Fdps PE=2 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 1.397e-33
Identity = 73/172 (42.44%), Postives = 110/172 (63.95%), Query Frame = 2
Query:  128 FIEVYGVLKQELLNDPAFEFDHDSRQWVDRMLDYNVPGGKLNRGLSVVDSYRLLKEGKELTDDEFFLSSALGWCIEWLQAYFLVLDDIMDGSHTRRGQPCWFRVPKVGMIAANDGVLLRNHISRILKNHFRDKPYYVDLLDLFNEVEFQTASGQMIDLITTIEAEKDLSKYS 643
            F ++  VL ++ L  P      D+   +  +L+YN  GGK NRGL+VV +++ L E K+   +    +  +GWC+E LQA+FLV DDIMD S TRRGQ CW++ P +G+ A ND +LL   I R+LK + R++PYY++LL+LF +  +QT  GQ +DL+T  +   DL +Y+
Sbjct:   21 FSQIVKVLTEKELGHPEIG---DAIARLKEVLEYNALGGKYNRGLTVVQAFQELVEPKKQDAESLQRALTVGWCVELLQAFFLVSDDIMDSSLTRRGQICWYQKPGIGLDAINDALLLEASIYRLLKFYCREQPYYLNLLELFLQSSYQTEIGQTLDLMTAPQGHVDLGRYT 189          
BLAST of CN182123 vs. ExPASy Swiss-Prot
Match: FPPS_HUMAN (Farnesyl pyrophosphate synthetase OS=Homo sapiens GN=FDPS PE=1 SV=4)

HSP 1 Score: 140.198 bits (352), Expect = 9.057e-33
Identity = 73/177 (41.24%), Postives = 110/177 (62.15%), Query Frame = 2
Query:  113 DLKSRFIEVYGVLKQELLNDPAFEFDHDSRQWVDRMLDYNVPGGKLNRGLSVVDSYRLLKEGKELTDDEFFLSSALGWCIEWLQAYFLVLDDIMDGSHTRRGQPCWFRVPKVGMIAANDGVLLRNHISRILKNHFRDKPYYVDLLDLFNEVEFQTASGQMIDLITTIEAEKDLSKYS 643
            D    F ++  VL ++ +  P      D+   +  +L+YN  GGK NRGL+VV ++R L E ++   D    +  +GWC+E LQA+FLV DDIMD S TRRGQ CW++ P VG+ A ND  LL   I R+LK + R++PYY++L++LF +  +QT  GQ +DL+T  +   DL +++
Sbjct:   82 DFVQHFSQIVRVLTEDEMGHPEIG---DAIARLKEVLEYNAIGGKYNRGLTVVVAFRELVEPRKQDADSLQRAWTVGWCVELLQAFFLVADDIMDSSLTRRGQICWYQKPGVGLDAINDANLLEACIYRLLKLYCREQPYYLNLIELFLQSSYQTEIGQTLDLLTAPQGNVDLVRFT 255          
The following BLAST results are available for this feature:
BLAST of CN182123 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 23
Match NameE-valueIdentityDescription
FPPS_KLULA6.243e-5055.08Farnesyl pyrophosphate synthetase OS=Kluyveromyces... [more]
FPPS_YEAST3.206e-4651.65Farnesyl pyrophosphate synthetase OS=Saccharomyces... [more]
FPPS_SCHPO6.476e-3945.05Farnesyl pyrophosphate synthetase OS=Schizosacchar... [more]
FPPS_NEUCR2.461e-3846.70Farnesyl pyrophosphate synthetase OS=Neurospora cr... [more]
FPPS_GIBFU7.160e-3847.70Farnesyl pyrophosphate synthetase OS=Gibberella fu... [more]
FPPS_RAT2.547e-3543.02Farnesyl pyrophosphate synthetase OS=Rattus norveg... [more]
FPPS_BOVIN1.651e-3442.37Farnesyl pyrophosphate synthetase OS=Bos taurus GN... [more]
FPPS_CHICK4.803e-3450.70Farnesyl pyrophosphate synthetase OS=Gallus gallus... [more]
FPPS_MOUSE1.397e-3342.44Farnesyl pyrophosphate synthetase OS=Mus musculus ... [more]
FPPS_HUMAN9.057e-3341.24Farnesyl pyrophosphate synthetase OS=Homo sapiens ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS04_0001P18_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001P18, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN182123 ID=CN182123; Name=CN182123; organism=Citrus sinensis; type=EST; length=658bp
GCTCTCTCTCTCTCTCTTCTCTGTATTTTGCTTTCTTTCATTCTGTTTCT
CTCTTTTTTTTCTTACTTTTTTTTTGGTGGTGGGTCGCAAAAGCGGAAGG
TAAAAAATGAGTGATCTGAAGTCAAGATTCATTGAGGTGTATGGCGTTTT
GAAACAAGAGCTGCTGAATGATCCTGCATTTGAGTTCGATCACGATTCTC
GCCAATGGGTTGATCGTATGCTGGATTACAATGTACCTGGAGGAAAGCTG
AACCGAGGGCTATCTGTTGTTGACAGCTACAGGTTACTGAAAGAAGGAAA
AGAACTAACAGATGATGAATTCTTTCTCTCATCTGCACTAGGCTGGTGCA
TCGAATGGCTTCAAGCATATTTTCTTGTTCTTGATGATATCATGGATGGC
TCTCATACACGCCGTGGTCAACCTTGCTGGTTCAGAGTCCCCAAGGTTGG
TATGATTGCTGCAAATGATGGTGTCTTACTACGCAACCATATCTCCAGAA
TTCTCAAGAATCATTTTAGAGACAAGCCTTATTACGTGGACCTGTTGGAT
TTATTTAATGAGGTGGAATTTCAAACAGCTTCAGGACAAATGATAGACTT
AATTACCACAATCGAAGCAGAGAAAGATCTATCGAAGTACTCATTGCCAC
TTCATCGT
back to top