CN188892

Overview
NameCN188892
Unique NameCN188892
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length773
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN188892 vs. ExPASy Swiss-Prot
Match: RGL2_ARATH (DELLA protein RGL2 OS=Arabidopsis thaliana GN=RGL2 PE=1 SV=2)

HSP 1 Score: 108.227 bits (269), Expect = 5.067e-23
Identity = 75/207 (36.23%), Postives = 102/207 (49.28%), Query Frame = 2
Query:  155 YDFSPCFSLGFMAANLAILEATMEQTTGNTIGSNKIHVIDFDIGQGGQYMNLFHALSARLNGKPAIVKVTAVADGTASEEKLKAVRDKLSQVAERVGVCLRFNVAICLKFDDLSRDSLGCEPD-ETLAVNFAFKLFRMPDESVSTENPRDELLRRVKGLSPSVVTLVEQETNTNTAPFMARVNEACAYYGALFDSIESTVLRDHSDR 772
            Y+  P        AN AILEA    TT     + ++HVID  + QG Q+  L  AL+ R  G P+          T + + L+ +  KL+Q A+ +GV   F         DL  +     P+ ETL VN  F+L R+   S S E    +LL  VK + PS+VT+VEQE N N   F+ R NEA  YY +LFDS+E +      DR
Sbjct:  259 YESCPYLKFAHFTANQAILEAV---TT-----ARRVHVIDLGLNQGMQWPALMQALALRPGGPPSFRLTGIGPPQTENSDSLQQLGWKLAQFAQNMGVEFEFKGLAAESLSDLEPEMFETRPESETLVVNSVFELHRLLARSGSIE----KLLNTVKAIKPSIVTVVEQEANHNGIVFLDRFNEALHYYSSLFDSLEDSYSLPSQDR 453          
BLAST of CN188892 vs. ExPASy Swiss-Prot
Match: SCL11_ARATH (Scarecrow-like protein 11 OS=Arabidopsis thaliana GN=SCL11 PE=2 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 6.617e-23
Identity = 73/254 (28.74%), Postives = 126/254 (49.61%), Query Frame = 2
Query:   14 TNSKGNSEQRLMEHMCSALKSRVN-----PHENPPPVAELFGKEHAESTQLLYDFSPCFSLGFMAANLAILEATMEQTTGNTIGSNKIHVIDFDIGQGGQYMNLFHALSARLNGKPAIVKVTAVA---DGTASEEKLKAVRDKLSQVAERVGVCLRFNVAICLKFDDLSRDSLGCEPDETLAVNFAFKLFRMPDESVSTENPRDELLRRVKGLSPSVVTLVEQETNTNTAPFMARVNEACAYYGALFDSIESTV 751
            ++S G+  QRL  +   AL++R+      P  NP P +     +  ++ +L     P +   + AAN +I E  M+ T        K+H++DF +  G Q+  L  ALS R  G P +++VT +     G    ++++    +L +  ++  V   FN  I  K++ ++ D L   P ET  VN   +L   PDE+VS ++PRD +L+  + ++P +    E     N+  FM R  EA  +Y +LFD  ++T+
Sbjct:  254 SSSNGDGTQRLAFYFAEALEARITGNISPPVSNPFPSSTTSMVDILKAYKLFVHTCPIYVTDYFAANKSIYELAMKAT--------KLHIVDFGVLYGFQWPCLLRALSKRPGGPP-MLRVTGIELPQAGFRPSDRVEETGRRLKRFCDQFNVPFEFNF-IAKKWETITLDELMINPGETTVVNCIHRLQYTPDETVSLDSPRDTVLKLFRDINPDLFVFAEINGMYNSPFFMTRFREALFHYSSLFDMFDTTI 497          
BLAST of CN188892 vs. ExPASy Swiss-Prot
Match: SCL7_ARATH (Scarecrow-like protein 7 OS=Arabidopsis thaliana GN=SLC7 PE=2 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.474e-22
Identity = 76/258 (29.46%), Postives = 125/258 (48.45%), Query Frame = 2
Query:    8 QATNSKGNSEQRLMEHMCSALKSRVNPHENPPPVAELFGKEHAESTQLLYDFSPCFSLGFMAANLAILEATMEQTTGNTIGSNKIHVIDFDIGQGGQYMNLFHALSARLNGKPAIVKVTAVAD---GTASEEKLKAVRDKLSQVAERVGVCLRFNVAICLKFDDLSRDSLGCEPDETLAVNFAFKLFRMPDESVSTENPRDELLRRVKGLSPSVVTLVEQETNTNTAPFMARVNEACAYYGALFDSIESTVLRDHSDR 772
            ++ +  G+  QR+  +   AL  +    E+P   +    ++   S + L D  P      + AN AILEAT +        SN IH++DF I QG Q+  L  AL+ R +GKP  ++++ +     G +    L A  ++L   A  + +   F   +      L+  S   +PDE L VNF  +L+++ DE+ +T       LR  + L+P +VTL E E + N   F  RV  +  +Y A+F+S+E  + RD  +R
Sbjct:  200 ESVSESGDPIQRVGYYFAEALSHKET--ESPSSSSSSSLEDFILSYKTLNDACPYSKFAHLTANQAILEATNQ--------SNNIHIVDFGIFQGIQWSALLQALATRSSGKPTRIRISGIPAPSLGDSPGPSLIATGNRLRDFAAILDLNFEF-YPVLTPIQLLNGSSFRVDPDEVLVVNFMLELYKLLDETATTVGTA---LRLARSLNPRIVTLGEYEVSLNRVEFANRVKNSLRFYSAVFESLEPNLDRDSKER 443          
BLAST of CN188892 vs. ExPASy Swiss-Prot
Match: RGL3_ARATH (DELLA protein RGL3 OS=Arabidopsis thaliana GN=RGL3 PE=1 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.474e-22
Identity = 77/207 (37.20%), Postives = 108/207 (52.17%), Query Frame = 2
Query:  155 YDFSPCFSLGFMAANLAILEATMEQTTGNTIGSNKIHVIDFDIGQGGQYMNLFHALSARLNGKPAIVKVTAVADGTASEEKLKAVRDKLSQVAERVGVCLRFNVAICLKFDDLSRDSLGCEPD-ETLAVNFAFKLFRMPDESVSTENPRDELLRRVKGLSPSVVTLVEQETNTNTAPFMARVNEACAYYGALFDSIESTVLRDHSDR 772
            YD  P        AN AILEA    TT     S  +HVID  + QG Q+  L  AL+ R  G P+  ++T V +  ++ E ++ +  KL+Q+A+ +GV  +FN     +  DL  D      + ETL VN  F+L  +  +  S E    +LL  VK + P +VT+VEQE N N   F+ R NEA  YY +LFDS+E  V+    DR
Sbjct:  232 YDSCPYLKFAHFTANQAILEAV---TT-----SRVVHVIDLGLNQGMQWPALMQALALRPGGPPSF-RLTGVGN-PSNREGIQELGWKLAQLAQAIGVEFKFNGLTTERLSDLEPDMFETRTESETLVVNSVFELHPVLSQPGSIE----KLLATVKAVKPGLVTVVEQEANHNGDVFLDRFNEALHYYSSLFDSLEDGVVIPSQDR 424          
BLAST of CN188892 vs. ExPASy Swiss-Prot
Match: DWRF8_MAIZE (DELLA protein DWARF8 OS=Zea mays GN=D8 PE=1 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.802e-20
Identity = 77/250 (30.80%), Postives = 120/250 (48.00%), Query Frame = 2
Query:   17 NSKGNSEQRLMEHMCSALKSRVNPHENPPPVAELFGKEHAESTQL-LYDFSPCFSLGFMAANLAILEATMEQTTGNTIGSNKIHVIDFDIGQGGQYMNLFHALSARLNGKPAIVKVTAVADGTASE-EKLKAVRDKLSQVAERVGVCLRFNVAICLKFDDLSRDSLGCEPDET------LAVNFAFKLFRMPDESVSTENPRDELLRRVKGLSPSVVTLVEQETNTNTAPFMARVNEACAYYGALFDSIE 742
            +S+G + +++  +   AL  RV     PPP + L     A+      Y+  P        AN AILEA          G  ++HV+DF I QG Q+  L  AL+ R  G P+  ++T V      E + L+ V  KL+Q A  + V  ++   +     DL    L  E D+T      +AVN  F+L R+    ++     +++L  V+ + P +VT+VEQE N N+  F+ R  E+  YY  +FDS+E
Sbjct:  274 SSQGGAMRKVAAYFGEALARRVYRFR-PPPDSSLLDAAFADLLHAHFYESCPYLKFAHFTANQAILEAFA--------GCRRVHVVDFGIKQGMQWPALLQALALRPGGPPSF-RLTGVGPPQPDETDALQQVGWKLAQFAHTIRVDFQYRGLVAATLADLEPFMLQPEGDDTDDEPEVIAVNSVFELHRL----LAQPGALEKVLGTVRAVRPRIVTVVEQEANHNSGTFLDRFTESLHYYSTMFDSLE 509          
BLAST of CN188892 vs. ExPASy Swiss-Prot
Match: SCR1_ORYSJ (Protein SCARECROW 1 OS=Oryza sativa subsp. japonica GN=SCR1 PE=1 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 5.243e-20
Identity = 81/257 (31.52%), Postives = 125/257 (48.64%), Query Frame = 2
Query:   26 GNSEQRLMEHMCSALKSRV--------NPHENPPPVAELFGKEHAESTQLLYDFSPCFSLGFMAANLAILEATMEQTTGNTIGSNKIHVIDFDIGQGGQYMNLFHALSARLNGKPAIVKVTAVADGTASEEKLKAVRDKLSQVAERVGVCLRFNVAICLKFDDLSRDSLGCEPDETLAVNFAFKLFRMPDESVSTENPRDELLRRVKGLSPSVVTLVEQETNTNTAPFMARVNEACAYYGALFDSIESTVLRDHSDR 772
            G S QR+  +   A+ +R+         P  NP P A       A + Q+    SP        AN AI EA   +         ++H+ID DI QG Q+  LFH L++R  G P  V++T +    AS E L+A   +LS  A+ +G+   F   +  K  +L  + LG    E +AV++      + D + S  N     L  ++ L+P VVT+VEQ+  +++  F+AR  EA  YY ALFDS++++   D  +R
Sbjct:  317 GTSTQRVAAYFAEAMSARLVSSCLGLYAPLPNPSPAAARLHGRVAAAFQVFNGISPFVKFSHFTANQAIQEAFERE--------ERVHIIDLDIMQGLQWPGLFHILASRPGGPPR-VRLTGLG---ASMEALEATGKRLSDFADTLGLPFEF-CPVADKAGNLDPEKLGVTRREAVAVHWL--RHSLYDVTGSDSN----TLWLIQRLAPKVVTMVEQDL-SHSGSFLARFVEAIHYYSALFDSLDASYSEDSPER 553          
BLAST of CN188892 vs. ExPASy Swiss-Prot
Match: SCR1_ORYSI (Protein SCARECROW 1 OS=Oryza sativa subsp. indica GN=SCR1 PE=3 SV=2)

HSP 1 Score: 98.2117 bits (243), Expect = 5.243e-20
Identity = 81/257 (31.52%), Postives = 125/257 (48.64%), Query Frame = 2
Query:   26 GNSEQRLMEHMCSALKSRV--------NPHENPPPVAELFGKEHAESTQLLYDFSPCFSLGFMAANLAILEATMEQTTGNTIGSNKIHVIDFDIGQGGQYMNLFHALSARLNGKPAIVKVTAVADGTASEEKLKAVRDKLSQVAERVGVCLRFNVAICLKFDDLSRDSLGCEPDETLAVNFAFKLFRMPDESVSTENPRDELLRRVKGLSPSVVTLVEQETNTNTAPFMARVNEACAYYGALFDSIESTVLRDHSDR 772
            G S QR+  +   A+ +R+         P  NP P A       A + Q+    SP        AN AI EA   +         ++H+ID DI QG Q+  LFH L++R  G P  V++T +    AS E L+A   +LS  A+ +G+   F   +  K  +L  + LG    E +AV++      + D + S  N     L  ++ L+P VVT+VEQ+  +++  F+AR  EA  YY ALFDS++++   D  +R
Sbjct:  325 GTSTQRVAAYFAEAMSARLVSSCLGLYAPLPNPSPAAARLHGRVAAAFQVFNGISPFVKFSHFTANQAIQEAFERE--------ERVHIIDLDIMQGLQWPGLFHILASRPGGPPR-VRLTGLG---ASMEALEATGKRLSDFADTLGLPFEF-CPVADKAGNLDPEKLGVTRREAVAVHWL--RHSLYDVTGSDSN----TLWLIQRLAPKVVTMVEQDL-SHSGSFLARFVEAIHYYSALFDSLDASYSEDSPER 561          
BLAST of CN188892 vs. ExPASy Swiss-Prot
Match: GAI_GOSHI (DELLA protein GAI OS=Gossypium hirsutum GN=GAI PE=2 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.526e-19
Identity = 65/200 (32.50%), Postives = 98/200 (49.00%), Query Frame = 2
Query:  155 YDFSPCFSLGFMAANLAILEATMEQTTGNTIGSNKIHVIDFDIGQGGQYMNLFHALSARLNGKPAIVKVTAVADGTASEEKLKAVRDKLSQVAERVGVCLRFNVAICLKFDDLSRDSLGCEPDE--TLAVNFAFKLFRMPDESVSTENPRDELLRRVKGLSPSVVTLVEQETNTNTAPFMARVNEACAYYGALFDSIEST 748
            Y+  P        AN AILEA           ++++HVIDF + QG Q+  L  AL+ R  G PA            + + L+ V  KL+Q+AER+G+   F   +     DL  + L   P E   +AVN  F+L  +    ++     ++++  +K + P +VT+VEQE N N   F+ R  EA  YY  LFDS+E +
Sbjct:  245 YETCPYLKFAHFTANQAILEAFSM--------ASRVHVIDFGLKQGMQWPALMQALALRPGGPPAFRLTGIGPPQPDNTDALQQVGWKLAQLAERIGIEFEFRGFVANSLADLEPEMLDIRPPEIEVVAVNAVFELHPL----LARPGGIEKVVSSIKAMKPKIVTVVEQEANHNGPVFLDRFTEALHYYSTLFDSLEGS 432          
BLAST of CN188892 vs. ExPASy Swiss-Prot
Match: RGA1_BRACM (DELLA protein RGA1 OS=Brassica campestris GN=RGA1 PE=1 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 4.439e-19
Identity = 75/247 (30.36%), Postives = 118/247 (47.77%), Query Frame = 2
Query:   20 SKGNSEQRLMEHMCSALKSRVNPHENPPPVAELFGKEHAESTQL---LYDFSPCFSLGFMAANLAILEATMEQTTGNTIGSNKIHVIDFDIGQGGQYMNLFHALSARLNGKPAIVKVTAVADGTA-SEEKLKAVRDKLSQVAERVGVCLRFNVAICLKFDDLSRDSLGCEPDET--LAVNFAFKLFRMPDESVSTENPRDELLRRVKGLSPSVVTLVEQETNTNTAPFMARVNEACAYYGALFDSIE 742
            S+  + +++  +   AL  R+  +   PP  ++   +H+ S  L    Y+  P        AN AILEA          G  ++HVIDF + QG Q+  L  AL+ R  G P+  ++T +    A + + L  V  KL+Q+AE + V   +   +     DL    L   P ET  +AVN  F+L ++   +   E    ++   VK + P + T+VEQE+N N   F+ R  E+  YY  LFDS+E
Sbjct:  240 SQAGAMRKVATYFAEALARRI--YRLSPPQTQI---DHSLSDTLQMHFYETCPYLKFAHFTANQAILEAFE--------GKKRVHVIDFSMNQGLQWPALMQALALREGGPPSF-RLTGIGPPAADNSDHLHEVGCKLAQLAEAIHVEFEYRGFVANSLADLDASMLELRPSETEAVAVNSVFELHKLLGRTGGIE----KVFGVVKQIKPVIFTVVEQESNHNGPVFLDRFTESLHYYSTLFDSLE 468          
BLAST of CN188892 vs. ExPASy Swiss-Prot
Match: GAI1_VITVI (DELLA protein GAI1 OS=Vitis vinifera GN=GAI1 PE=2 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 4.439e-19
Identity = 64/196 (32.65%), Postives = 92/196 (46.94%), Query Frame = 2
Query:  155 YDFSPCFSLGFMAANLAILEATMEQTTGNTIGSNKIHVIDFDIGQGGQYMNLFHALSARLNGKPAIVKVTAVADGTASEEKLKAVRDKLSQVAERVGVCLRFNVAICLKFDDLSRDSLGCEPDETLAVNFAFKLFRMPDESVSTENPRDELLRRVKGLSPSVVTLVEQETNTNTAPFMARVNEACAYYGALFDSIE 742
            Y+  P        AN AILEA          G  ++HVIDF + QG Q+  L  AL+ R  G P+          T + + L  V  KL+Q+AE + V   +   +     DL    L     E++AVN  F+L  +    ++     + +L  VK + P +VT+VEQE N N   F+ R  E+  YY  LFDS+E
Sbjct:  288 YETCPYLKFAHFTANQAILEAFE--------GKKRVHVIDFSMKQGMQWPALMQALALRPGGPPSFRLTGIGPPSTDNTDHLHEVGWKLAQLAETIHVEFEYRGFVANSLADLDASMLELRDGESVAVNSVFELHSL----LARPGGIERVLSAVKDMKPDIVTIVEQEANHNGPVFLDRFTESLHYYSTLFDSLE 471          
The following BLAST results are available for this feature:
BLAST of CN188892 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 49
Match NameE-valueIdentityDescription
RGL2_ARATH5.067e-2336.23DELLA protein RGL2 OS=Arabidopsis thaliana GN=RGL2... [more]
SCL11_ARATH6.617e-2328.74Scarecrow-like protein 11 OS=Arabidopsis thaliana ... [more]
SCL7_ARATH1.474e-2229.46Scarecrow-like protein 7 OS=Arabidopsis thaliana G... [more]
RGL3_ARATH1.474e-2237.20DELLA protein RGL3 OS=Arabidopsis thaliana GN=RGL3... [more]
DWRF8_MAIZE1.802e-2030.80DELLA protein DWARF8 OS=Zea mays GN=D8 PE=1 SV=1[more]
SCR1_ORYSJ5.243e-2031.52Protein SCARECROW 1 OS=Oryza sativa subsp. japonic... [more]
SCR1_ORYSI5.243e-2031.52Protein SCARECROW 1 OS=Oryza sativa subsp. indica ... [more]
GAI_GOSHI1.526e-1932.50DELLA protein GAI OS=Gossypium hirsutum GN=GAI PE=... [more]
RGA1_BRACM4.439e-1930.36DELLA protein RGA1 OS=Brassica campestris GN=RGA1 ... [more]
GAI1_VITVI4.439e-1932.65DELLA protein GAI1 OS=Vitis vinifera GN=GAI1 PE=2 ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0006P18_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0006P18, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188892 ID=CN188892; Name=CN188892; organism=Citrus sinensis; type=EST; length=773bp
GGCTGACCAGGCGACGAATTCGAAAGGGAATTCGGAACAGAGGTTGATGG
AGCACATGTGTTCAGCGTTGAAGTCGCGCGTGAACCCACACGAGAACCCG
CCGCCTGTCGCTGAGTTGTTCGGCAAAGAACACGCCGAGTCGACTCAGTT
GCTTTACGATTTCTCCCCGTGTTTCAGCCTGGGCTTCATGGCTGCTAATC
TCGCCATTCTTGAAGCTACAATGGAGCAAACAACAGGTAACACAATTGGC
AGCAATAAGATTCATGTTATTGATTTCGATATCGGCCAAGGCGGACAGTA
CATGAATCTCTTCCACGCGCTCTCCGCGCGTCTAAACGGGAAACCCGCAA
TCGTTAAAGTCACAGCCGTGGCTGATGGTACTGCCAGTGAAGAGAAACTG
AAGGCCGTTCGTGATAAGCTGAGTCAAGTTGCGGAACGTGTTGGAGTTTG
TCTGCGTTTCAACGTAGCAATCTGTTTGAAATTCGATGATCTGAGTCGCG
ACTCACTGGGTTGCGAGCCGGATGAAACACTAGCTGTGAATTTCGCTTTC
AAGCTATTTCGAATGCCGGACGAGAGCGTGTCAACGGAGAATCCGAGGGA
CGAGCTGCTCCGGCGTGTAAAGGGGTTGTCACCGAGTGTGGTAACGTTGG
TGGAGCAAGAAACGAACACAAATACGGCGCCGTTCATGGCGCGCGTCAAC
GAGGCGTGTGCATATTACGGAGCGTTGTTTGACTCGATCGAGTCGACCGT
GCTGAGAGACCACTCGGACCGAG
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