CN188892
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CN188892 vs. ExPASy Swiss-Prot
Match: SCR2_ORYSJ (Protein SCARECROW 2 OS=Oryza sativa subsp. japonica GN=SCR2 PE=2 SV=1) HSP 1 Score: 94.3597 bits (233), Expect = 7.571e-19 Identity = 79/257 (30.74%), Postives = 124/257 (48.25%), Query Frame = 2 Query: 26 GNSEQRLMEHMCSALKSRV--------NPHENPPPVAELFGKEHAESTQLLYDFSPCFSLGFMAANLAILEATMEQTTGNTIGSNKIHVIDFDIGQGGQYMNLFHALSARLNGKPAIVKVTAVADGTASEEKLKAVRDKLSQVAERVGVCLRFNVAICLKFDDLSRDSLGCEPDETLAVNFAFKLFRMPDESVSTENPRDELLRRVKGLSPSVVTLVEQETNTNTAPFMARVNEACAYYGALFDSIESTVLRDHSDR 772 G S QR+ + A+ +R+ P +P P A + Q+ SP AN AI EA + ++H+ID DI QG Q+ LFH L++R G P V++T + AS E L+A +LS A+ +G+ F + K +L + LG E +AV++ + D + S N L ++ L+P VVT+VEQ+ +++ F+AR EA YY ALFDS++++ D +R Sbjct: 326 GTSTQRVAAYFAEAMSARLVSSCLGLYAPLPSPSPAGARVHGRVAAAFQVFNGISPFVKFSHFTANQAIQEAFERE--------ERVHIIDLDIMQGLQWPGLFHILASRPGGPPR-VRLTGLG---ASMEALEATGKRLSDFADTLGLPFEF-CPVADKAGNLDPEKLGVTRREAVAVHWL--RHSLYDVTGSDSN----TLWLIQRLAPKVVTMVEQDL-SHSGSFLARFVEAIHYYSALFDSLDASYSEDSPER 562
BLAST of CN188892 vs. ExPASy Swiss-Prot
Match: SCR2_ORYSI (Protein SCARECROW 2 OS=Oryza sativa subsp. indica GN=SCR2 PE=3 SV=2) HSP 1 Score: 94.3597 bits (233), Expect = 7.571e-19 Identity = 79/257 (30.74%), Postives = 124/257 (48.25%), Query Frame = 2 Query: 26 GNSEQRLMEHMCSALKSRV--------NPHENPPPVAELFGKEHAESTQLLYDFSPCFSLGFMAANLAILEATMEQTTGNTIGSNKIHVIDFDIGQGGQYMNLFHALSARLNGKPAIVKVTAVADGTASEEKLKAVRDKLSQVAERVGVCLRFNVAICLKFDDLSRDSLGCEPDETLAVNFAFKLFRMPDESVSTENPRDELLRRVKGLSPSVVTLVEQETNTNTAPFMARVNEACAYYGALFDSIESTVLRDHSDR 772 G S QR+ + A+ +R+ P +P P A + Q+ SP AN AI EA + ++H+ID DI QG Q+ LFH L++R G P V++T + AS E L+A +LS A+ +G+ F + K +L + LG E +AV++ + D + S N L ++ L+P VVT+VEQ+ +++ F+AR EA YY ALFDS++++ D +R Sbjct: 326 GTSTQRVAAYFAEAMSARLVSSCLGLYAPLPSPSPAGARVHGRVAAAFQVFNGISPFVKFSHFTANQAIQEAFERE--------ERVHIIDLDIMQGLQWPGLFHILASRPGGPPR-VRLTGLG---ASMEALEATGKRLSDFADTLGLPFEF-CPVADKAGNLDPEKLGVTRREAVAVHWL--RHSLYDVTGSDSN----TLWLIQRLAPKVVTMVEQDL-SHSGSFLARFVEAIHYYSALFDSLDASYSEDSPER 562
BLAST of CN188892 vs. ExPASy Swiss-Prot
Match: GAIPB_CUCMA (DELLA protein GAIP-B OS=Cucurbita maxima GN=GAIPB PE=2 SV=1) HSP 1 Score: 94.3597 bits (233), Expect = 7.571e-19 Identity = 66/212 (31.13%), Postives = 102/212 (48.11%), Query Frame = 2 Query: 128 EHAESTQL---LYDFSPCFSLGFMAANLAILEATMEQTTGNTIGSNKIHVIDFDIGQGGQYMNLFHALSARLNGKPAIVKVTAVADGTASEEKLKAVRDKLSQVAERVGVCLRFNVAICLKFDDLSRDSLGCEPDE--TLAVNFAFKLFRMPDESVSTENPRDELLRRVKGLSPSVVTLVEQETNTNTAPFMARVNEACAYYGALFDSIEST 748 +H+ S L Y+ SP AN AILEA G ++HVIDF + QG Q+ L AL+ R +G PA + + L+ V KL+++ E + V + + DL L P E ++ VN F+L ++ ++ ++++ VK + P ++T+VEQE N N FM R E+ YY LFDS+ES+ Sbjct: 280 DHSMSDMLQLHFYESSPYLKFAHFTANQAILEAFE--------GKKRVHVIDFSMNQGMQWPALLQALALRPSGPPAFRLTGIGPPAPDNSDYLQDVGWKLAKLVETINVEFEYRGFVANSLADLDASMLELRPSEVESVVVNSVFELHKL----LARPGAIEKVMSVVKQMKPEIMTVVEQEANHNGPVFMDRFTESLHYYSTLFDSLESS 479
BLAST of CN188892 vs. ExPASy Swiss-Prot
Match: RGA2_BRACM (DELLA protein RGA2 OS=Brassica campestris GN=RGA2 PE=3 SV=1) HSP 1 Score: 93.5893 bits (231), Expect = 1.291e-18 Identity = 74/247 (29.96%), Postives = 118/247 (47.77%), Query Frame = 2 Query: 20 SKGNSEQRLMEHMCSALKSRVNPHENPPPVAELFGKEHAESTQL---LYDFSPCFSLGFMAANLAILEATMEQTTGNTIGSNKIHVIDFDIGQGGQYMNLFHALSARLNGKPAIVKVTAVADGTA-SEEKLKAVRDKLSQVAERVGVCLRFNVAICLKFDDLSRDSLGCEPD--ETLAVNFAFKLFRMPDESVSTENPRDELLRRVKGLSPSVVTLVEQETNTNTAPFMARVNEACAYYGALFDSIE 742 S+ + +++ + AL R+ + PP ++ +H+ S L Y+ P AN AILEA G ++HVIDF + QG Q+ L AL+ R G P + ++T + A + + L V KL+Q+AE + V + + DL L P E +AVN F+L ++ + E ++L VK + P + T+VEQE++ N F+ R E+ YY LFDS+E Sbjct: 246 SQAGAMRKVATYFAEALARRI--YRLSPPQTQI---DHSLSDTLQMHFYETCPYLKFAHFTANQAILEAFE--------GKKRVHVIDFSMNQGLQWPALMQALALR-EGGPPVFRLTGIGPPAADNSDHLHEVGCKLAQLAEAIHVEFEYRGFVANSLADLDASMLELRPSEIEAVAVNSVFELHKLLGRTGGIE----KVLGVVKQIKPVIFTVVEQESSHNGPVFLDRFTESLHYYSTLFDSLE 474
BLAST of CN188892 vs. ExPASy Swiss-Prot
Match: SCR_MAIZE (Protein SCARECROW OS=Zea mays GN=SCR PE=2 SV=1) HSP 1 Score: 93.2041 bits (230), Expect = 1.687e-18 Identity = 80/258 (31.01%), Postives = 126/258 (48.84%), Query Frame = 2 Query: 26 GNSEQRLMEHMCSALKSRVNPH---------ENPPPVAELFGKEHAESTQLLYDFSPCFSLGFMAANLAILEATMEQTTGNTIGSNKIHVIDFDIGQGGQYMNLFHALSARLNGKPAIVKVTAVADGTASEEKLKAVRDKLSQVAERVGVCLRFNVAICLKFDDLSRDSLGCEPDETLAVNFAFKLFRMPDESVSTENPRDELLRRVKGLSPSVVTLVEQETNTNTAPFMARVNEACAYYGALFDSIESTVLRDHSDR 772 G S QR+ + A+ +R+ P A L G+ A + Q+ SP AN AI EA + ++H+ID DI QG Q+ LFH L++R G P V++T + AS E L+A +LS A+ +G+ F A+ K ++ + LG E +AV++ + D + S N L ++ L+P VVT+VEQ+ +++ F+AR EA YY ALFDS++++ D +R Sbjct: 333 GTSTQRVAAYFAEAMSARLVSSCLGLYAPLPPGSPAAARLHGRV-AAAFQVFNGISPFVKFSHFTANQAIQEAFERE--------ERVHIIDLDIMQGLQWPGLFHILASRPGGPPR-VRLTGLG---ASMEALEATGKRLSDFADTLGLPFEF-CAVAEKAGNVDPEKLGVTRREAVAVHWLH--HSLYDVTGSDSN----TLWLIQRLAPKVVTMVEQDL-SHSGSFLARFVEAIHYYSALFDSLDASYGEDSPER 569
BLAST of CN188892 vs. ExPASy Swiss-Prot
Match: SLN1_HORVU (DELLA protein SLN1 OS=Hordeum vulgare GN=SLN1 PE=1 SV=1) HSP 1 Score: 92.4337 bits (228), Expect = 2.877e-18 Identity = 74/250 (29.60%), Postives = 117/250 (46.80%), Query Frame = 2 Query: 20 SKGNSEQRLMEHMCSALKSRVNPHENPPPVAELFGKEHAESTQL-LYDFSPCFSLGFMAANLAILEATMEQTTGNTIGSNKIHVIDFDIGQGGQYMNLFHALSARLNGKPAIVKVTAVADGTASE-EKLKAVRDKLSQVAERVGVCLRFNVAICLKFDDLSRDSLGCEPDE-------TLAVNFAFKLFRMPDESVSTENPRDELLRRVKGLSPSVVTLVEQETNTNTAPFMARVNEACAYYGALFDSIE 742 S+G + +++ + AL RV P P + L A+ Y+ P AN AILEA G ++HV+DF I QG Q+ L AL+ R G P+ ++T V E + L+ V KL+Q A + V ++ + DL L E +E +AVN F++ R+ ++ +++L V+ + P +VT+VEQE N N+ F+ R E+ YY +FDS+E Sbjct: 262 SQGGAMRKVAAYFGEALARRVFRFR-PQPDSSLLDAAFADLLHAHFYESCPYLKFAHFTANQAILEAFA--------GCRRVHVVDFGIKQGMQWPALLQALALRPGGPPSF-RLTGVGPPQPDETDALQQVGWKLAQFAHTIRVDFQYRGLVAATLADLEPFMLQPEGEEDPNEEPEVIAVNSVFEMHRL----LAQPGALEKVLGTVRAVRPRIVTVVEQEANHNSGSFLDRFTESLHYYSTMFDSLE 497
BLAST of CN188892 vs. ExPASy Swiss-Prot
Match: RHT1_WHEAT (DELLA protein RHT-1 OS=Triticum aestivum GN=RHT1 PE=1 SV=1) HSP 1 Score: 92.4337 bits (228), Expect = 2.877e-18 Identity = 74/250 (29.60%), Postives = 117/250 (46.80%), Query Frame = 2 Query: 20 SKGNSEQRLMEHMCSALKSRVNPHENPPPVAELFGKEHAESTQL-LYDFSPCFSLGFMAANLAILEATMEQTTGNTIGSNKIHVIDFDIGQGGQYMNLFHALSARLNGKPAIVKVTAVADGTASE-EKLKAVRDKLSQVAERVGVCLRFNVAICLKFDDLSRDSLGCEPDE-------TLAVNFAFKLFRMPDESVSTENPRDELLRRVKGLSPSVVTLVEQETNTNTAPFMARVNEACAYYGALFDSIE 742 S+G + +++ + AL RV P P + L A+ Y+ P AN AILEA G ++HV+DF I QG Q+ L AL+ R G P+ ++T V E + L+ V KL+Q A + V ++ + DL L E +E +AVN F++ R+ ++ +++L V+ + P +VT+VEQE N N+ F+ R E+ YY +FDS+E Sbjct: 266 SQGGAMRKVAAYFGEALARRVFRFR-PQPDSSLLDAAFADLLHAHFYESCPYLKFAHFTANQAILEAFA--------GCRRVHVVDFGIKQGMQWPALLQALALRPGGPPSF-RLTGVGPPQPDETDALQQVGWKLAQFAHTIRVDFQYRGLVAATLADLEPFMLQPEGEEDPNEEPEVIAVNSVFEMHRL----LAQPGALEKVLGTVRAVRPRIVTVVEQEANHNSGTFLDRFTESLHYYSTMFDSLE 501
BLAST of CN188892 vs. ExPASy Swiss-Prot
Match: RGL1_ARATH (DELLA protein RGL1 OS=Arabidopsis thaliana GN=RGL1 PE=1 SV=1) HSP 1 Score: 91.6633 bits (226), Expect = 4.908e-18 Identity = 68/205 (33.17%), Postives = 98/205 (47.80%), Query Frame = 2 Query: 155 YDFSPCFSLGFMAANLAILE--ATMEQTTGNTIGSNKIHVIDFDIGQGGQYMNLFHALSARLNGKPAIVKVTAVADGTASEEKLKAVRDKLSQVAERVGVCLRFNVAICLKFDDLSRDSLGCEPD-ETLAVNFAFKLFRMPDESVSTENPRDELLRRVKGLSPSVVTLVEQETNTNTAPFMARVNEACAYYGALFDSIESTVLRD 760 Y+ P AN AILE AT E K+HVID + G Q+ L AL+ R NG P ++T + S ++ V KL Q+A +GV F DL + L P E++AVN F+L R+ ++ D+ L +K + P ++T+VEQE N N F+ R E+ YY +LFDS+E +D Sbjct: 227 YESCPYLKFAHFTANQAILEVFATAE----------KVHVIDLGLNHGLQWPALIQALALRPNGPPDF-RLTGIG---YSLTDIQEVGWKLGQLASTIGVNFEFKSIALNNLSDLKPEMLDIRPGLESVAVNSVFELHRL----LAHPGSIDKFLSTIKSIRPDIMTVVEQEANHNGTVFLDRFTESLHYYSSLFDSLEGPPSQD 413
BLAST of CN188892 vs. ExPASy Swiss-Prot
Match: RGA_ARATH (DELLA protein RGA OS=Arabidopsis thaliana GN=RGA PE=1 SV=1) HSP 1 Score: 91.6633 bits (226), Expect = 4.908e-18 Identity = 73/246 (29.67%), Postives = 111/246 (45.12%), Query Frame = 2 Query: 20 SKGNSEQRLMEHMCSALKSRVNPHENPPPVAELFGKEHAESTQL---LYDFSPCFSLGFMAANLAILEATMEQTTGNTIGSNKIHVIDFDIGQGGQYMNLFHALSARLNGKPAIVKVTAVADGTASEEKLKAVRDKLSQVAERVGVCLRFNVAICLKFDDLSRDSLGCEPDET--LAVNFAFKLFRMPDESVSTENPRDELLRRVKGLSPSVVTLVEQETNTNTAPFMARVNEACAYYGALFDSIE 742 S+ + +++ + AL R+ + PP ++ +H S L Y+ P AN AILEA G ++HVIDF + QG Q+ L AL+ R G P + + L V KL+Q+AE + V + + DL L P +T +AVN F+L ++ E ++L VK + P + T+VEQE+N N F+ R E+ YY LFDS+E Sbjct: 253 SQAGAMRKVATYFAEALARRI--YRLSPPQNQI---DHCLSDTLQMHFYETCPYLKFAHFTANQAILEAFE--------GKKRVHVIDFSMNQGLQWPALMQALALREGGPPTFRLTGIGPPAPDNSDHLHEVGCKLAQLAEAIHVEFEYRGFVANSLADLDASMLELRPSDTEAVAVNSVFELHKLLGRPGGIE----KVLGVVKQIKPVIFTVVEQESNHNGPVFLDRFTESLHYYSTLFDSLE 481
BLAST of CN188892 vs. ExPASy Swiss-Prot
Match: SLR1_ORYSJ (DELLA protein SLR1 OS=Oryza sativa subsp. japonica GN=SLR1 PE=1 SV=1) HSP 1 Score: 90.1225 bits (222), Expect = 1.428e-17 Identity = 74/250 (29.60%), Postives = 117/250 (46.80%), Query Frame = 2 Query: 20 SKGNSEQRLMEHMCSALKSRVNPHENPPPVAELFGKEHAESTQL-LYDFSPCFSLGFMAANLAILEATMEQTTGNTIGSNKIHVIDFDIGQGGQYMNLFHALSARLNGKPAIVKVTAVADGTASE-EKLKAVRDKLSQVAERVGVCLRFNVAICLKFDDLSRDSLGCEPD-------ETLAVNFAFKLFRMPDESVSTENPRDELLRRVKGLSPSVVTLVEQETNTNTAPFMARVNEACAYYGALFDSIE 742 S+G + +++ + AL RV + P + L A+ Y+ P AN AILEA G +++HV+DF I QG Q+ L AL+ R G P+ ++T V E + L+ V KL+Q A + V ++ + DL L E + E +AVN F+L R+ ++ +++L V + P +VT+VEQE N N+ F+ R E+ YY +FDS+E Sbjct: 273 SQGGAMRKVAAYFGEALARRV--YRFRPADSTLLDAAFADLLHAHFYESCPYLKFAHFTANQAILEAFA--------GCHRVHVVDFGIKQGMQWPALLQALALRPGGPPSF-RLTGVGPPQPDETDALQQVGWKLAQFAHTIRVDFQYRGLVAATLADLEPFMLQPEGEADANEEPEVIAVNSVFELHRL----LAQPGALEKVLGTVHAVRPRIVTVVEQEANHNSGSFLDRFTESLHYYSTMFDSLE 507 The following BLAST results are available for this feature:
BLAST of CN188892 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 49
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >CN188892 ID=CN188892; Name=CN188892; organism=Citrus sinensis; type=EST; length=773bpback to top |