CN188892

Overview
NameCN188892
Unique NameCN188892
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length773
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10458 contig Csv1_Contig10458:1019..1791. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN188892 vs. ExPASy Swiss-Prot
Match: SCR2_ORYSJ (Protein SCARECROW 2 OS=Oryza sativa subsp. japonica GN=SCR2 PE=2 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 7.571e-19
Identity = 79/257 (30.74%), Postives = 124/257 (48.25%), Query Frame = 2
Query:   26 GNSEQRLMEHMCSALKSRV--------NPHENPPPVAELFGKEHAESTQLLYDFSPCFSLGFMAANLAILEATMEQTTGNTIGSNKIHVIDFDIGQGGQYMNLFHALSARLNGKPAIVKVTAVADGTASEEKLKAVRDKLSQVAERVGVCLRFNVAICLKFDDLSRDSLGCEPDETLAVNFAFKLFRMPDESVSTENPRDELLRRVKGLSPSVVTLVEQETNTNTAPFMARVNEACAYYGALFDSIESTVLRDHSDR 772
            G S QR+  +   A+ +R+         P  +P P         A + Q+    SP        AN AI EA   +         ++H+ID DI QG Q+  LFH L++R  G P  V++T +    AS E L+A   +LS  A+ +G+   F   +  K  +L  + LG    E +AV++      + D + S  N     L  ++ L+P VVT+VEQ+  +++  F+AR  EA  YY ALFDS++++   D  +R
Sbjct:  326 GTSTQRVAAYFAEAMSARLVSSCLGLYAPLPSPSPAGARVHGRVAAAFQVFNGISPFVKFSHFTANQAIQEAFERE--------ERVHIIDLDIMQGLQWPGLFHILASRPGGPPR-VRLTGLG---ASMEALEATGKRLSDFADTLGLPFEF-CPVADKAGNLDPEKLGVTRREAVAVHWL--RHSLYDVTGSDSN----TLWLIQRLAPKVVTMVEQDL-SHSGSFLARFVEAIHYYSALFDSLDASYSEDSPER 562          
BLAST of CN188892 vs. ExPASy Swiss-Prot
Match: SCR2_ORYSI (Protein SCARECROW 2 OS=Oryza sativa subsp. indica GN=SCR2 PE=3 SV=2)

HSP 1 Score: 94.3597 bits (233), Expect = 7.571e-19
Identity = 79/257 (30.74%), Postives = 124/257 (48.25%), Query Frame = 2
Query:   26 GNSEQRLMEHMCSALKSRV--------NPHENPPPVAELFGKEHAESTQLLYDFSPCFSLGFMAANLAILEATMEQTTGNTIGSNKIHVIDFDIGQGGQYMNLFHALSARLNGKPAIVKVTAVADGTASEEKLKAVRDKLSQVAERVGVCLRFNVAICLKFDDLSRDSLGCEPDETLAVNFAFKLFRMPDESVSTENPRDELLRRVKGLSPSVVTLVEQETNTNTAPFMARVNEACAYYGALFDSIESTVLRDHSDR 772
            G S QR+  +   A+ +R+         P  +P P         A + Q+    SP        AN AI EA   +         ++H+ID DI QG Q+  LFH L++R  G P  V++T +    AS E L+A   +LS  A+ +G+   F   +  K  +L  + LG    E +AV++      + D + S  N     L  ++ L+P VVT+VEQ+  +++  F+AR  EA  YY ALFDS++++   D  +R
Sbjct:  326 GTSTQRVAAYFAEAMSARLVSSCLGLYAPLPSPSPAGARVHGRVAAAFQVFNGISPFVKFSHFTANQAIQEAFERE--------ERVHIIDLDIMQGLQWPGLFHILASRPGGPPR-VRLTGLG---ASMEALEATGKRLSDFADTLGLPFEF-CPVADKAGNLDPEKLGVTRREAVAVHWL--RHSLYDVTGSDSN----TLWLIQRLAPKVVTMVEQDL-SHSGSFLARFVEAIHYYSALFDSLDASYSEDSPER 562          
BLAST of CN188892 vs. ExPASy Swiss-Prot
Match: GAIPB_CUCMA (DELLA protein GAIP-B OS=Cucurbita maxima GN=GAIPB PE=2 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 7.571e-19
Identity = 66/212 (31.13%), Postives = 102/212 (48.11%), Query Frame = 2
Query:  128 EHAESTQL---LYDFSPCFSLGFMAANLAILEATMEQTTGNTIGSNKIHVIDFDIGQGGQYMNLFHALSARLNGKPAIVKVTAVADGTASEEKLKAVRDKLSQVAERVGVCLRFNVAICLKFDDLSRDSLGCEPDE--TLAVNFAFKLFRMPDESVSTENPRDELLRRVKGLSPSVVTLVEQETNTNTAPFMARVNEACAYYGALFDSIEST 748
            +H+ S  L    Y+ SP        AN AILEA          G  ++HVIDF + QG Q+  L  AL+ R +G PA            + + L+ V  KL+++ E + V   +   +     DL    L   P E  ++ VN  F+L ++    ++     ++++  VK + P ++T+VEQE N N   FM R  E+  YY  LFDS+ES+
Sbjct:  280 DHSMSDMLQLHFYESSPYLKFAHFTANQAILEAFE--------GKKRVHVIDFSMNQGMQWPALLQALALRPSGPPAFRLTGIGPPAPDNSDYLQDVGWKLAKLVETINVEFEYRGFVANSLADLDASMLELRPSEVESVVVNSVFELHKL----LARPGAIEKVMSVVKQMKPEIMTVVEQEANHNGPVFMDRFTESLHYYSTLFDSLESS 479          
BLAST of CN188892 vs. ExPASy Swiss-Prot
Match: RGA2_BRACM (DELLA protein RGA2 OS=Brassica campestris GN=RGA2 PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.291e-18
Identity = 74/247 (29.96%), Postives = 118/247 (47.77%), Query Frame = 2
Query:   20 SKGNSEQRLMEHMCSALKSRVNPHENPPPVAELFGKEHAESTQL---LYDFSPCFSLGFMAANLAILEATMEQTTGNTIGSNKIHVIDFDIGQGGQYMNLFHALSARLNGKPAIVKVTAVADGTA-SEEKLKAVRDKLSQVAERVGVCLRFNVAICLKFDDLSRDSLGCEPD--ETLAVNFAFKLFRMPDESVSTENPRDELLRRVKGLSPSVVTLVEQETNTNTAPFMARVNEACAYYGALFDSIE 742
            S+  + +++  +   AL  R+  +   PP  ++   +H+ S  L    Y+  P        AN AILEA          G  ++HVIDF + QG Q+  L  AL+ R  G P + ++T +    A + + L  V  KL+Q+AE + V   +   +     DL    L   P   E +AVN  F+L ++   +   E    ++L  VK + P + T+VEQE++ N   F+ R  E+  YY  LFDS+E
Sbjct:  246 SQAGAMRKVATYFAEALARRI--YRLSPPQTQI---DHSLSDTLQMHFYETCPYLKFAHFTANQAILEAFE--------GKKRVHVIDFSMNQGLQWPALMQALALR-EGGPPVFRLTGIGPPAADNSDHLHEVGCKLAQLAEAIHVEFEYRGFVANSLADLDASMLELRPSEIEAVAVNSVFELHKLLGRTGGIE----KVLGVVKQIKPVIFTVVEQESSHNGPVFLDRFTESLHYYSTLFDSLE 474          
BLAST of CN188892 vs. ExPASy Swiss-Prot
Match: SCR_MAIZE (Protein SCARECROW OS=Zea mays GN=SCR PE=2 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.687e-18
Identity = 80/258 (31.01%), Postives = 126/258 (48.84%), Query Frame = 2
Query:   26 GNSEQRLMEHMCSALKSRVNPH---------ENPPPVAELFGKEHAESTQLLYDFSPCFSLGFMAANLAILEATMEQTTGNTIGSNKIHVIDFDIGQGGQYMNLFHALSARLNGKPAIVKVTAVADGTASEEKLKAVRDKLSQVAERVGVCLRFNVAICLKFDDLSRDSLGCEPDETLAVNFAFKLFRMPDESVSTENPRDELLRRVKGLSPSVVTLVEQETNTNTAPFMARVNEACAYYGALFDSIESTVLRDHSDR 772
            G S QR+  +   A+ +R+               P  A L G+  A + Q+    SP        AN AI EA   +         ++H+ID DI QG Q+  LFH L++R  G P  V++T +    AS E L+A   +LS  A+ +G+   F  A+  K  ++  + LG    E +AV++      + D + S  N     L  ++ L+P VVT+VEQ+  +++  F+AR  EA  YY ALFDS++++   D  +R
Sbjct:  333 GTSTQRVAAYFAEAMSARLVSSCLGLYAPLPPGSPAAARLHGRV-AAAFQVFNGISPFVKFSHFTANQAIQEAFERE--------ERVHIIDLDIMQGLQWPGLFHILASRPGGPPR-VRLTGLG---ASMEALEATGKRLSDFADTLGLPFEF-CAVAEKAGNVDPEKLGVTRREAVAVHWLH--HSLYDVTGSDSN----TLWLIQRLAPKVVTMVEQDL-SHSGSFLARFVEAIHYYSALFDSLDASYGEDSPER 569          
BLAST of CN188892 vs. ExPASy Swiss-Prot
Match: SLN1_HORVU (DELLA protein SLN1 OS=Hordeum vulgare GN=SLN1 PE=1 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.877e-18
Identity = 74/250 (29.60%), Postives = 117/250 (46.80%), Query Frame = 2
Query:   20 SKGNSEQRLMEHMCSALKSRVNPHENPPPVAELFGKEHAESTQL-LYDFSPCFSLGFMAANLAILEATMEQTTGNTIGSNKIHVIDFDIGQGGQYMNLFHALSARLNGKPAIVKVTAVADGTASE-EKLKAVRDKLSQVAERVGVCLRFNVAICLKFDDLSRDSLGCEPDE-------TLAVNFAFKLFRMPDESVSTENPRDELLRRVKGLSPSVVTLVEQETNTNTAPFMARVNEACAYYGALFDSIE 742
            S+G + +++  +   AL  RV     P P + L     A+      Y+  P        AN AILEA          G  ++HV+DF I QG Q+  L  AL+ R  G P+  ++T V      E + L+ V  KL+Q A  + V  ++   +     DL    L  E +E        +AVN  F++ R+    ++     +++L  V+ + P +VT+VEQE N N+  F+ R  E+  YY  +FDS+E
Sbjct:  262 SQGGAMRKVAAYFGEALARRVFRFR-PQPDSSLLDAAFADLLHAHFYESCPYLKFAHFTANQAILEAFA--------GCRRVHVVDFGIKQGMQWPALLQALALRPGGPPSF-RLTGVGPPQPDETDALQQVGWKLAQFAHTIRVDFQYRGLVAATLADLEPFMLQPEGEEDPNEEPEVIAVNSVFEMHRL----LAQPGALEKVLGTVRAVRPRIVTVVEQEANHNSGSFLDRFTESLHYYSTMFDSLE 497          
BLAST of CN188892 vs. ExPASy Swiss-Prot
Match: RHT1_WHEAT (DELLA protein RHT-1 OS=Triticum aestivum GN=RHT1 PE=1 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.877e-18
Identity = 74/250 (29.60%), Postives = 117/250 (46.80%), Query Frame = 2
Query:   20 SKGNSEQRLMEHMCSALKSRVNPHENPPPVAELFGKEHAESTQL-LYDFSPCFSLGFMAANLAILEATMEQTTGNTIGSNKIHVIDFDIGQGGQYMNLFHALSARLNGKPAIVKVTAVADGTASE-EKLKAVRDKLSQVAERVGVCLRFNVAICLKFDDLSRDSLGCEPDE-------TLAVNFAFKLFRMPDESVSTENPRDELLRRVKGLSPSVVTLVEQETNTNTAPFMARVNEACAYYGALFDSIE 742
            S+G + +++  +   AL  RV     P P + L     A+      Y+  P        AN AILEA          G  ++HV+DF I QG Q+  L  AL+ R  G P+  ++T V      E + L+ V  KL+Q A  + V  ++   +     DL    L  E +E        +AVN  F++ R+    ++     +++L  V+ + P +VT+VEQE N N+  F+ R  E+  YY  +FDS+E
Sbjct:  266 SQGGAMRKVAAYFGEALARRVFRFR-PQPDSSLLDAAFADLLHAHFYESCPYLKFAHFTANQAILEAFA--------GCRRVHVVDFGIKQGMQWPALLQALALRPGGPPSF-RLTGVGPPQPDETDALQQVGWKLAQFAHTIRVDFQYRGLVAATLADLEPFMLQPEGEEDPNEEPEVIAVNSVFEMHRL----LAQPGALEKVLGTVRAVRPRIVTVVEQEANHNSGTFLDRFTESLHYYSTMFDSLE 501          
BLAST of CN188892 vs. ExPASy Swiss-Prot
Match: RGL1_ARATH (DELLA protein RGL1 OS=Arabidopsis thaliana GN=RGL1 PE=1 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 4.908e-18
Identity = 68/205 (33.17%), Postives = 98/205 (47.80%), Query Frame = 2
Query:  155 YDFSPCFSLGFMAANLAILE--ATMEQTTGNTIGSNKIHVIDFDIGQGGQYMNLFHALSARLNGKPAIVKVTAVADGTASEEKLKAVRDKLSQVAERVGVCLRFNVAICLKFDDLSRDSLGCEPD-ETLAVNFAFKLFRMPDESVSTENPRDELLRRVKGLSPSVVTLVEQETNTNTAPFMARVNEACAYYGALFDSIESTVLRD 760
            Y+  P        AN AILE  AT E          K+HVID  +  G Q+  L  AL+ R NG P   ++T +     S   ++ V  KL Q+A  +GV   F         DL  + L   P  E++AVN  F+L R+    ++     D+ L  +K + P ++T+VEQE N N   F+ R  E+  YY +LFDS+E    +D
Sbjct:  227 YESCPYLKFAHFTANQAILEVFATAE----------KVHVIDLGLNHGLQWPALIQALALRPNGPPDF-RLTGIG---YSLTDIQEVGWKLGQLASTIGVNFEFKSIALNNLSDLKPEMLDIRPGLESVAVNSVFELHRL----LAHPGSIDKFLSTIKSIRPDIMTVVEQEANHNGTVFLDRFTESLHYYSSLFDSLEGPPSQD 413          
BLAST of CN188892 vs. ExPASy Swiss-Prot
Match: RGA_ARATH (DELLA protein RGA OS=Arabidopsis thaliana GN=RGA PE=1 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 4.908e-18
Identity = 73/246 (29.67%), Postives = 111/246 (45.12%), Query Frame = 2
Query:   20 SKGNSEQRLMEHMCSALKSRVNPHENPPPVAELFGKEHAESTQL---LYDFSPCFSLGFMAANLAILEATMEQTTGNTIGSNKIHVIDFDIGQGGQYMNLFHALSARLNGKPAIVKVTAVADGTASEEKLKAVRDKLSQVAERVGVCLRFNVAICLKFDDLSRDSLGCEPDET--LAVNFAFKLFRMPDESVSTENPRDELLRRVKGLSPSVVTLVEQETNTNTAPFMARVNEACAYYGALFDSIE 742
            S+  + +++  +   AL  R+  +   PP  ++   +H  S  L    Y+  P        AN AILEA          G  ++HVIDF + QG Q+  L  AL+ R  G P             + + L  V  KL+Q+AE + V   +   +     DL    L   P +T  +AVN  F+L ++       E    ++L  VK + P + T+VEQE+N N   F+ R  E+  YY  LFDS+E
Sbjct:  253 SQAGAMRKVATYFAEALARRI--YRLSPPQNQI---DHCLSDTLQMHFYETCPYLKFAHFTANQAILEAFE--------GKKRVHVIDFSMNQGLQWPALMQALALREGGPPTFRLTGIGPPAPDNSDHLHEVGCKLAQLAEAIHVEFEYRGFVANSLADLDASMLELRPSDTEAVAVNSVFELHKLLGRPGGIE----KVLGVVKQIKPVIFTVVEQESNHNGPVFLDRFTESLHYYSTLFDSLE 481          
BLAST of CN188892 vs. ExPASy Swiss-Prot
Match: SLR1_ORYSJ (DELLA protein SLR1 OS=Oryza sativa subsp. japonica GN=SLR1 PE=1 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.428e-17
Identity = 74/250 (29.60%), Postives = 117/250 (46.80%), Query Frame = 2
Query:   20 SKGNSEQRLMEHMCSALKSRVNPHENPPPVAELFGKEHAESTQL-LYDFSPCFSLGFMAANLAILEATMEQTTGNTIGSNKIHVIDFDIGQGGQYMNLFHALSARLNGKPAIVKVTAVADGTASE-EKLKAVRDKLSQVAERVGVCLRFNVAICLKFDDLSRDSLGCEPD-------ETLAVNFAFKLFRMPDESVSTENPRDELLRRVKGLSPSVVTLVEQETNTNTAPFMARVNEACAYYGALFDSIE 742
            S+G + +++  +   AL  RV  +   P  + L     A+      Y+  P        AN AILEA          G +++HV+DF I QG Q+  L  AL+ R  G P+  ++T V      E + L+ V  KL+Q A  + V  ++   +     DL    L  E +       E +AVN  F+L R+    ++     +++L  V  + P +VT+VEQE N N+  F+ R  E+  YY  +FDS+E
Sbjct:  273 SQGGAMRKVAAYFGEALARRV--YRFRPADSTLLDAAFADLLHAHFYESCPYLKFAHFTANQAILEAFA--------GCHRVHVVDFGIKQGMQWPALLQALALRPGGPPSF-RLTGVGPPQPDETDALQQVGWKLAQFAHTIRVDFQYRGLVAATLADLEPFMLQPEGEADANEEPEVIAVNSVFELHRL----LAQPGALEKVLGTVHAVRPRIVTVVEQEANHNSGSFLDRFTESLHYYSTMFDSLE 507          
The following BLAST results are available for this feature:
BLAST of CN188892 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 49
Match NameE-valueIdentityDescription
SCR2_ORYSJ7.571e-1930.74Protein SCARECROW 2 OS=Oryza sativa subsp. japonic... [more]
SCR2_ORYSI7.571e-1930.74Protein SCARECROW 2 OS=Oryza sativa subsp. indica ... [more]
GAIPB_CUCMA7.571e-1931.13DELLA protein GAIP-B OS=Cucurbita maxima GN=GAIPB ... [more]
RGA2_BRACM1.291e-1829.96DELLA protein RGA2 OS=Brassica campestris GN=RGA2 ... [more]
SCR_MAIZE1.687e-1831.01Protein SCARECROW OS=Zea mays GN=SCR PE=2 SV=1[more]
SLN1_HORVU2.877e-1829.60DELLA protein SLN1 OS=Hordeum vulgare GN=SLN1 PE=1... [more]
RHT1_WHEAT2.877e-1829.60DELLA protein RHT-1 OS=Triticum aestivum GN=RHT1 P... [more]
RGL1_ARATH4.908e-1833.17DELLA protein RGL1 OS=Arabidopsis thaliana GN=RGL1... [more]
RGA_ARATH4.908e-1829.67DELLA protein RGA OS=Arabidopsis thaliana GN=RGA P... [more]
SLR1_ORYSJ1.428e-1729.60DELLA protein SLR1 OS=Oryza sativa subsp. japonica... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0006P18_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0006P18, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188892 ID=CN188892; Name=CN188892; organism=Citrus sinensis; type=EST; length=773bp
GGCTGACCAGGCGACGAATTCGAAAGGGAATTCGGAACAGAGGTTGATGG
AGCACATGTGTTCAGCGTTGAAGTCGCGCGTGAACCCACACGAGAACCCG
CCGCCTGTCGCTGAGTTGTTCGGCAAAGAACACGCCGAGTCGACTCAGTT
GCTTTACGATTTCTCCCCGTGTTTCAGCCTGGGCTTCATGGCTGCTAATC
TCGCCATTCTTGAAGCTACAATGGAGCAAACAACAGGTAACACAATTGGC
AGCAATAAGATTCATGTTATTGATTTCGATATCGGCCAAGGCGGACAGTA
CATGAATCTCTTCCACGCGCTCTCCGCGCGTCTAAACGGGAAACCCGCAA
TCGTTAAAGTCACAGCCGTGGCTGATGGTACTGCCAGTGAAGAGAAACTG
AAGGCCGTTCGTGATAAGCTGAGTCAAGTTGCGGAACGTGTTGGAGTTTG
TCTGCGTTTCAACGTAGCAATCTGTTTGAAATTCGATGATCTGAGTCGCG
ACTCACTGGGTTGCGAGCCGGATGAAACACTAGCTGTGAATTTCGCTTTC
AAGCTATTTCGAATGCCGGACGAGAGCGTGTCAACGGAGAATCCGAGGGA
CGAGCTGCTCCGGCGTGTAAAGGGGTTGTCACCGAGTGTGGTAACGTTGG
TGGAGCAAGAAACGAACACAAATACGGCGCCGTTCATGGCGCGCGTCAAC
GAGGCGTGTGCATATTACGGAGCGTTGTTTGACTCGATCGAGTCGACCGT
GCTGAGAGACCACTCGGACCGAG
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