CN188892

Overview
NameCN188892
Unique NameCN188892
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length773
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN188892 vs. ExPASy Swiss-Prot
Match: GAI_ARATH (DELLA protein GAI OS=Arabidopsis thaliana GN=GAI PE=1 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 3.181e-17
Identity = 69/228 (30.26%), Postives = 107/228 (46.93%), Query Frame = 2
Query:   77 RVNPHENPPPVAELFGKEHAESTQL---LYDFSPCFSLGFMAANLAILEATMEQTTGNTIGSNKIHVIDFDIGQGGQYMNLFHALSARLNGKPAIVKVTAVADGTASE-EKLKAVRDKLSQVAERVGVCLRFNVAICLKFDDLSRDSLGCEPDE--TLAVNFAFKLFRMPDESVSTENPRDELLRRVKGLSPSVVTLVEQETNTNTAPFMARVNEACAYYGALFDSIE 742
            R++P ++P         +H+ S  L    Y+  P        AN AILEA          G  ++HVIDF + QG Q+  L  AL+ R  G P + ++T +        + L  V  KL+ +AE + V   +   +     DL    L   P E  ++AVN  F+L ++    +      D++L  V  + P + T+VEQE+N N+  F+ R  E+  YY  LFDS+E
Sbjct:  223 RLSPSQSPI--------DHSLSDTLQMHFYETCPYLKFAHFTANQAILEAFQ--------GKKRVHVIDFSMSQGLQWPALMQALALRPGGPP-VFRLTGIGPPAPDNFDYLHEVGCKLAHLAEAIHVEFEYRGFVANTLADLDASMLELRPSEIESVAVNSVFELHKL----LGRPGAIDKVLGVVNQIKPEIFTVVEQESNHNSPIFLDRFTESLHYYSTLFDSLE 429          
BLAST of CN188892 vs. ExPASy Swiss-Prot
Match: SCL30_ARATH (Scarecrow-like protein 30 OS=Arabidopsis thaliana GN=SCL30 PE=2 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 9.255e-17
Identity = 69/255 (27.06%), Postives = 115/255 (45.10%), Query Frame = 2
Query:   26 GNSEQRLMEHMCSALKSRVNPHENPPPVAELFGKEHAESTQLLYDF---SPCFSLGFMAANLAILEATMEQTTGNTIGSNKIHVIDFDIGQGGQYMNLFHALSARLNGKPAIVKVTAVA---DGTASEEKLKAVRDKLSQVAERVGVCLRFNVAICLKFDDLSRDSLGCEPDETLAVNFAFKLFRMPDESVSTENPRDELLRRVKGLSPSVVTLVEQETNTNTAPFMARVNEACAYYGALFDSIESTVLRDHSDR 772
            G++ QRL  H   AL++R+      P  A        +  +    F    P   + +  AN  I E   + TT        +H+IDF I  G Q+  L  ALS R  G P +++VT +     G    E+++    +L +  ++  V   ++  I   +++++ D L     ET  VN   +L   PDE+VS  +PRD  L+  + ++P +    E     N+  F+ R  EA  +  +LFD  E+T+  D + R
Sbjct:  243 GDATQRLGYHFAEALEARITGTMTTPISATSSRTSMVDILKAYKGFVQACPTLIMCYFTANRTINELASKATT--------LHIIDFGILYGFQWPCLIQALSKRDIGPP-LLRVTGIELPQSGFRPSERVEETGRRLKRFCDKFNVPFEYSF-IAKNWENITLDDLVINSGETTVVNCILRLQYTPDETVSLNSPRDTALKLFRDINPDLFVFAEINGTYNSPFFLTRFREALFHCSSLFDMYETTLSEDDNCR 487          
BLAST of CN188892 vs. ExPASy Swiss-Prot
Match: GAIP_CUCMA (DELLA protein GAIP OS=Cucurbita maxima GN=GAIP PE=2 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 2.062e-16
Identity = 62/198 (31.31%), Postives = 92/198 (46.46%), Query Frame = 2
Query:  155 YDFSPCFSLGFMAANLAILEATMEQTTGNTIGSNKIHVIDFDIGQGGQYMNLFHALSARLNGKPAIVKVTAVADGTASEEKLKAVRDKLSQVAERVGVCLRFNVAICLKFDDLSRDSLGCEPDE--TLAVNFAFKLFRMPDESVSTENPRDELLRRVKGLSPSVVTLVEQETNTNTAPFMARVNEACAYYGALFDSIE 742
            Y+  P        AN AILEA          G  ++HVIDF + QG Q+  L  AL+ R +G P             + + L+ V  KL + AE + V   +   +     DL    L   P E  ++ VN  F+L ++    ++     +++L  VK + P +VT+VEQE N N   F+ R  E+  YY  LFDS+E
Sbjct:  285 YESCPYLKFAHFTANQAILEAFE--------GKKRVHVIDFSMNQGIQWPALIQALALRPSGPPTFRLTGIGPPAPDNSDYLQDVGWKLVKFAETLHVEFEYRGFVANSLADLDASMLELRPSEVESVVVNSVFELHQL----LARPGAIEKVLSVVKQMKPEIVTVVEQEANHNGPVFVERFTESLHYYSTLFDSLE 470          
BLAST of CN188892 vs. ExPASy Swiss-Prot
Match: SCL14_ARATH (Scarecrow-like protein 14 OS=Arabidopsis thaliana GN=SCL14 PE=2 SV=2)

HSP 1 Score: 85.1149 bits (209), Expect = 4.593e-16
Identity = 64/253 (25.30%), Postives = 116/253 (45.85%), Query Frame = 2
Query:   26 GNSEQRLMEHMCSALKSRVNPHENPPPVAELFGKEHAESTQLLYDFSPCFSL-GFMAANLAILEATMEQTTGNTIGSNKIHVIDFDIGQGGQYMNLFHALSARLNGKPAIVKVTAVA---DGTASEEKLKAVRDKLSQVAERVGVCLRFNVAICLKFDDLSRDSLGCEPDETLAVNFAFKLFRMPDESVSTENPRDELLRRVKGLSPSVVTLVEQETNTNTAPFMARVNEACAYYGALFDSIESTVLRDHSDR 772
            GN  +RL  +  ++L++R+        +      +   +  +L  +    S+  F  A +     +M + T N   +N IH+IDF I  G Q+  L H LS    G    +++T +     G    E ++    +L++  +R  V   +N AI  K++ +  + L     E + VN  F+   + DE+V   +PRD +L+ ++ ++P+V        N N   F+ R  EA  +Y A+FD  +S + R+   R
Sbjct:  427 GNGSERLAHYFANSLEARLAG--TGTQIYTALSSKKTSAADMLKAYQTYMSVCPFKKAAIIFANHSMMRFTAN---ANTIHIIDFGISYGFQWPALIHRLSLSRPGGSPKLRITGIELPQRGFRPAEGVQETGHRLARYCQRHNVPFEYN-AIAQKWETIQVEDLKLRQGEYVVVNSLFRFRNLLDETVLVNSPRDAVLKLIRKINPNVFIPAILSGNYNAPFFVTRFREALFHYSAVFDMCDSKLAREDEMR 673          
BLAST of CN188892 vs. ExPASy Swiss-Prot
Match: SCR_PEA (Protein SCARECROW OS=Pisum sativum GN=SCR PE=2 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.745e-15
Identity = 74/262 (28.24%), Postives = 120/262 (45.80%), Query Frame = 2
Query:    8 QATNSKGNSEQRLMEHMCSALKSRVNPH------ENPPPVAELFGKEHAESTQLLYDFSPCFSLGFMAANLAILEATMEQTTGNTIGSNKIHVIDFDIGQGGQYMNLFHALSARLNGKPAIVKVTAVADGTASEEKLKAVRDKLSQVAERVGVCLRFNVAICLKFDDLSRDSLGCEPDETLAVNF-AFKLFRMPDESVSTENPRDELLRRVKGLSPSVVTLVEQETNTNTAPFMARVNEACAYYGALFDSIESTVLRDHSDR 772
            Q +   G S QR+  +   A+ +R+           P        ++ A + Q+    SP        AN AI EA   +         ++H+ID DI QG Q+  LFH L++R  G P  V++T +     S E L+A   +LS  A ++G+   F   +  K  ++  + L     E +AV++    L+ +     +T       L  ++ L+P VVT+VEQ+  +N   F+ R  EA  YY ALFDS+ S+   +  +R
Sbjct:  475 QLSTPFGTSAQRVAAYFSEAISARLVSSCLGIYATLPVSSHTPHNQKVASAFQVFNGISPFVKFSHFTANQAIQEAFERE--------ERVHIIDLDIMQGLQWPGLFHILASRPGG-PPYVRLTGLG---TSMETLEATGKRLSDFANKLGLPFEF-FPVAEKVGNIDVEKLNVSKSEAVAVHWLQHSLYDVTGSDTNT-------LWLLQRLAPKVVTVVEQDL-SNAGSFLGRFVEAIHYYSALFDSLGSSYGEESEER 715          
BLAST of CN188892 vs. ExPASy Swiss-Prot
Match: SCR_IPONI (Protein SCARECROW OS=Ipomoea nil GN=SCR PE=1 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 3.888e-15
Identity = 73/259 (28.19%), Postives = 123/259 (47.49%), Query Frame = 2
Query:   26 GNSEQRLMEHMCSALKSRV---------NPHENPPPVAELFGKEHAESTQLLYDFSPCFSLGFMAANLAILEATMEQTTGNTIGSNKIHVIDFDIGQGGQYMNLFHALSARLNGKPAIVKVTAVADGTASEEKLKAVRDKLSQVAERVGVCLRFNVAICLKFDDLSRDSLGCEPDETLAVNF-AFKLFRMPDESVSTENPRDELLRRVKGLSPSVVTLVEQETNTNTAPFMARVNEACAYYGALFDSIESTVLRDHSDR 772
            G S QR+  +   A+ +R+         +   N  P++    ++ A + Q+    SP        AN AI EA   +        +++H+ID DI QG Q+  LFH L++R  G P +V++T +     S E L+A   +LS  A+++G+   F   +  K  +L    L     E +AV++    L+ +     +T       L  ++ L+P VVT+VEQ+  ++   F+ R  EA  YY ALFDS+ +    +  +R
Sbjct:  451 GTSAQRVAAYFSEAMSARLVNSCLGIYASAPLNALPLS--LNQKMASAFQVFNGISPFVKFSHFTANQAIQEAFERE--------DRVHIIDLDIMQGLQWPGLFHILASRPGG-PPLVRLTGLG---TSMEALEATGKRLSDFAQKLGLPFEF-FPVADKVGNLDPQRLNVNKREAVAVHWLQHSLYDVTGSDTNT-------LWLLQRLAPKVVTVVEQDL-SHAGSFLGRFVEAIHYYSALFDSLGACYGEESEER 686          
BLAST of CN188892 vs. ExPASy Swiss-Prot
Match: SCL34_ARATH (Scarecrow-like protein 34 OS=Arabidopsis thaliana GN=SCL34 PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 6.633e-15
Identity = 67/269 (24.91%), Postives = 124/269 (46.10%), Query Frame = 2
Query:    8 QATNSKGNSEQRLMEHMCSALKSRVNPHENPPPVAELFG------KEHAESTQLLY----DFSPCFSLGFMAANLAILEATMEQTTGNTIGSNKIHVIDFDIGQGGQYMNLFHALSARLNGKPAIVKVTAVA---DGTASEEKLKAVRDKLSQVAERVGVCLRFNVAICLKFDDLSRDSLGCEPDETLAVNFAFKLFRMPDESVSTEN-PRDELLRRVKGLSPSVVTLVEQETNTNTAPFMARVNEACAYYGALFDSIESTVLRDHSDR 772
            Q ++  G++ QRL     +AL++R+     P  +   +       K+ A  T   Y      SP  +L +  +   IL+   +           +H++DF I  G Q+     ++S R +  P  +++T +     G    E+++    +L++  +R  V   +       ++ +  + L   P+E LAVN   +L  + DE+ S EN PRD +L+ ++ ++P V        + N   F++R  EA  +Y ALFD  +ST+ RD+ +R
Sbjct:  277 QQSSPLGDAGQRLAHCFANALEARLQGSTGPM-IQTYYNALTSSLKDTAADTIRAYRVYLSSSPFVTLMYFFSIWMILDVAKDAPV--------LHIVDFGILYGFQWPMFIQSISDRKD-VPRKLRITGIELPQCGFRPAERIEETGRRLAEYCKRFNVPFEYKAIASQNWETIRIEDLDIRPNEVLAVNAGLRLKNLQDETGSEENCPRDAVLKLIRNMNPDVFIHAIVNGSFNAPFFISRFKEAVYHYSALFDMFDSTLPRDNKER 535          
BLAST of CN188892 vs. ExPASy Swiss-Prot
Match: SCR_ARATH (Protein SCARECROW OS=Arabidopsis thaliana GN=SCR PE=1 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.520e-14
Identity = 74/266 (27.82%), Postives = 121/266 (45.49%), Query Frame = 2
Query:    8 QATNSKGNSEQRLMEHMCSALKSRVN----------PHENPPPVAELFGKEHAESTQLLYDFSPCFSLGFMAANLAILEATMEQTTGNTIGSNKIHVIDFDIGQGGQYMNLFHALSARLNGKPAIVKVTAVADGTASEEKLKAVRDKLSQVAERVGVCLRFNVAICLKFDDLSRDSLGCEPDETLAVNF-AFKLFRMPDESVSTENPRDELLRRVKGLSPSVVTLVEQETNTNTAPFMARVNEACAYYGALFDSIESTVLRDHSDR 772
            Q +   G S QR+  +   A+ +R+           P    P    L   +   + Q+    SP        AN AI EA  ++        + +H+ID DI QG Q+  LFH L++R  G P  V++T +     S E L+A   +LS  A+++G+   F   +  K  +L  + L     E +AV++    L+ +      T       L  ++ L+P VVT+VEQ+  ++   F+ R  EA  YY ALFDS+ ++   +  +R
Sbjct:  318 QLSTPYGTSAQRVAAYFSEAMSARLLNSCLGIYAALPSRWMPQTHSL---KMVSAFQVFNGISPLVKFSHFTANQAIQEAFEKE--------DSVHIIDLDIMQGLQWPGLFHILASRPGGPPH-VRLTGLG---TSMEALQATGKRLSDFADKLGLPFEF-CPLAEKVGNLDTERLNVRKREAVAVHWLQHSLYDVTGSDAHT-------LWLLQRLAPKVVTVVEQDL-SHAGSFLGRFVEAIHYYSALFDSLGASYGEESEER 559          
BLAST of CN188892 vs. ExPASy Swiss-Prot
Match: SCL18_ARATH (Scarecrow-like protein 18 OS=Arabidopsis thaliana GN=SCL18 PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.520e-14
Identity = 60/219 (27.40%), Postives = 103/219 (47.03%), Query Frame = 2
Query:  152 LYDFSPCFSLGFMAANLAILEATMEQTTGNTIGSNKIHVIDFDIGQGGQYMNLFHALSARLNGK---PAIVKVTAVADGTASEEKLKAVRDKLSQVAERVGVCLRFNVAICLKFD------DLSRDSLGCEPDETLAVN---FAFKLFRMPDESVSTENPRDELLRRVKGLSPSVVTLVEQETNTNTAPFMARVNEACAYYGALFDSIESTVLRDHSDR 772
            L   +P    G + AN AIL+AT     G       +H++D DI QG Q+  L  AL+ R +     P  +++T           L    D+L++ A+ +G+  +F+  + ++ D       +   +L     ET+AVN   F  K+F    + +         L  +K L+  +VT+ E+E N     F+ R +EA  +Y A+FDS+E+T+  +  +R
Sbjct:  149 LNQLTPFIRFGHLTANQAILDATETNDNG------ALHILDLDISQGLQWPPLMQALAERSSNPSSPPPSLRITGCGRDVTG---LNRTGDRLTRFADSLGLQFQFHTLVIVEEDLAGLLLQIRLLALSAVQGETIAVNCVHFLHKIFNDDGDMIG------HFLSAIKSLNSRIVTMAEREANHGDHSFLNRFSEAVDHYMAIFDSLEATLPPNSRER 352          
BLAST of CN188892 vs. ExPASy Swiss-Prot
Match: SCL9_ARATH (Scarecrow-like protein 9 OS=Arabidopsis thaliana GN=SCL9 PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 7.333e-14
Identity = 53/196 (27.04%), Postives = 90/196 (45.92%), Query Frame = 2
Query:  185 FMAANLAILEATMEQTTGNTIGSNKIHVIDFDIGQGGQYMNLFHALSARLNGKPAIVKVTAVADGTASEEKLKAVRDKLSQVAERVGVCLRFNVAICLKFDDLSRDSLGCEPDETLAVNFAFKLFRMPDESVSTENPRDELLRRVKGLSPSVVTLVEQETNTNTAPFMARVNEACAYYGALFDSIESTVLRDHSDR 772
            F   +  I   T+    GN   S ++HVIDF I  G Q+  L H  S   + K  I  +     G    ++++    +L+  A+  GV   +  AI  K+D +  + L  + DE   VN  ++   + DESV  E+ RD +L  +  ++P +          N   F+ R  EA  ++ ++FD +E+ V R+  +R
Sbjct:  430 FRKLSYFITNKTIRDLVGN---SQRVHVIDFGILYGFQWPTLIHRFSMYGSPKVRITGIEFPQPGFRPAQRVEETGQRLAAYAKLFGVPFEYK-AIAKKWDAIQLEDLDIDRDEITVVNCLYRAENLHDESVKVESCRDTVLNLIGKINPDLFVFGIVNGAYNAPFFVTRFREALFHFSSIFDMLETIVPREDEER 621          
The following BLAST results are available for this feature:
BLAST of CN188892 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 49
Match NameE-valueIdentityDescription
GAI_ARATH3.181e-1730.26DELLA protein GAI OS=Arabidopsis thaliana GN=GAI P... [more]
SCL30_ARATH9.255e-1727.06Scarecrow-like protein 30 OS=Arabidopsis thaliana ... [more]
GAIP_CUCMA2.062e-1631.31DELLA protein GAIP OS=Cucurbita maxima GN=GAIP PE=... [more]
SCL14_ARATH4.593e-1625.30Scarecrow-like protein 14 OS=Arabidopsis thaliana ... [more]
SCR_PEA1.745e-1528.24Protein SCARECROW OS=Pisum sativum GN=SCR PE=2 SV=... [more]
SCR_IPONI3.888e-1528.19Protein SCARECROW OS=Ipomoea nil GN=SCR PE=1 SV=1[more]
SCL34_ARATH6.633e-1524.91Scarecrow-like protein 34 OS=Arabidopsis thaliana ... [more]
SCR_ARATH2.520e-1427.82Protein SCARECROW OS=Arabidopsis thaliana GN=SCR P... [more]
SCL18_ARATH2.520e-1427.40Scarecrow-like protein 18 OS=Arabidopsis thaliana ... [more]
SCL9_ARATH7.333e-1427.04Scarecrow-like protein 9 OS=Arabidopsis thaliana G... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0006P18_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0006P18, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188892 ID=CN188892; Name=CN188892; organism=Citrus sinensis; type=EST; length=773bp
GGCTGACCAGGCGACGAATTCGAAAGGGAATTCGGAACAGAGGTTGATGG
AGCACATGTGTTCAGCGTTGAAGTCGCGCGTGAACCCACACGAGAACCCG
CCGCCTGTCGCTGAGTTGTTCGGCAAAGAACACGCCGAGTCGACTCAGTT
GCTTTACGATTTCTCCCCGTGTTTCAGCCTGGGCTTCATGGCTGCTAATC
TCGCCATTCTTGAAGCTACAATGGAGCAAACAACAGGTAACACAATTGGC
AGCAATAAGATTCATGTTATTGATTTCGATATCGGCCAAGGCGGACAGTA
CATGAATCTCTTCCACGCGCTCTCCGCGCGTCTAAACGGGAAACCCGCAA
TCGTTAAAGTCACAGCCGTGGCTGATGGTACTGCCAGTGAAGAGAAACTG
AAGGCCGTTCGTGATAAGCTGAGTCAAGTTGCGGAACGTGTTGGAGTTTG
TCTGCGTTTCAACGTAGCAATCTGTTTGAAATTCGATGATCTGAGTCGCG
ACTCACTGGGTTGCGAGCCGGATGAAACACTAGCTGTGAATTTCGCTTTC
AAGCTATTTCGAATGCCGGACGAGAGCGTGTCAACGGAGAATCCGAGGGA
CGAGCTGCTCCGGCGTGTAAAGGGGTTGTCACCGAGTGTGGTAACGTTGG
TGGAGCAAGAAACGAACACAAATACGGCGCCGTTCATGGCGCGCGTCAAC
GAGGCGTGTGCATATTACGGAGCGTTGTTTGACTCGATCGAGTCGACCGT
GCTGAGAGACCACTCGGACCGAG
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