CN188892

Overview
NameCN188892
Unique NameCN188892
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length773
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN188892 vs. ExPASy Swiss-Prot
Match: NSP2_MEDTR (Nodulation-signaling pathway 2 protein OS=Medicago truncatula GN=NSP2 PE=1 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 2.134e-13
Identity = 62/227 (27.31%), Postives = 101/227 (44.49%), Query Frame = 2
Query:   86 PHENPPPVAELFGKEHAESTQLLYDFSPCFSLGFMAANLAILEATMEQTTGNTIGSNKIHVIDFDIGQGGQYMNLFHALSARLNGKPAIVKVTAVADGTASEEKLKAVRD---KLSQVAERVGVCLRFNVAICLKFDDLSRDSLGCEPDETLAVNFAFKL----FRMPDESVSTENPRDELLRRVKGLSPSVVTLVEQETNTNTAPFMARVNEACAYYGALFDSIES 745
            PH+N       F        QLL D SP    G   AN AI+EA   +         ++HVID+DI +G Q+ +L  +L++  NG    +++TA++        +  V++   +L+  A  +G    F+       +     +L     E L  N    L    +R P+   S        L   K L+P +VTLVE+E  +    F+ R  ++  +Y A+FDS+E+
Sbjct:  198 PHDNQNDTLAAF--------QLLQDMSPYVKFGHFTANQAIIEAVAHE--------RRVHVIDYDIMEGVQWASLIQSLASNNNGPH--LRITALSRTGTGRRSIATVQETGRRLTSFAASLGQPFSFHHCRLDSDETFRPSALKLVRGEALVFNCMLNLPHLSYRAPESVAS-------FLNGAKTLNPKLVTLVEEEVGSVIGGFVERFMDSLHHYSAVFDSLEA 399          
BLAST of CN188892 vs. ExPASy Swiss-Prot
Match: SCL33_ARATH (Scarecrow-like protein 33 OS=Arabidopsis thaliana GN=SCL33 PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.639e-13
Identity = 61/259 (23.55%), Postives = 120/259 (46.33%), Query Frame = 2
Query:    8 QATNSKGNSEQRLMEHMCSALKSRVNPHENPPPVAELFGKEHAESTQL-----LYDFSPCFSLGFMAANLAILEATMEQTTGNTIGSNKIHVIDFDIGQGGQYMNLFHALSARLNGKPAIVKVTAVA---DGTASEEKLKAVRDKLSQVAERVGVCLRFNVAICLKFDDLSRDSLGCEPDETLAVNFAFKLFRMPDESVSTENPRDELLRRVKGLSPSVVTLVEQETNTNTAPFMARVNEACAYYGALFDSIESTVLRD 760
            Q ++S G+  +RL  +  ++L++R+         A L  K+ + S  L          P   +  + AN +I+         ++  +  IH+IDF I  G Q+ +L H L+ R  G    +++T +     G    E +     +L++  ++  +   +N AI  K++ +  + L  +  E +AVN  F+   + DE+V+  +PRD +L+ ++ + P V        + N   F+ R  E   +Y +LFD  ++ + R+
Sbjct:  346 QHSSSYGDGTERLAHYFANSLEARLAGIGTQVYTA-LSSKKTSTSDMLKAYQTYISVCPFKKIAIIFANHSIMRLA------SSANAKTIHIIDFGISDGFQWPSLIHRLAWR-RGSSCKLRITGIELPQRGFRPAEGVIETGRRLAKYCQKFNIPFEYN-AIAQKWESIKLEDLKLKEGEFVAVNSLFRFRNLLDETVAVHSPRDTVLKLIRKIKPDVFIPGILSGSYNAPFFVTRFREVLFHYSSLFDMCDTNLTRE 595          
BLAST of CN188892 vs. ExPASy Swiss-Prot
Match: SHR_ARATH (Protein SHORT-ROOT OS=Arabidopsis thaliana GN=SHR PE=1 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.059e-12
Identity = 69/279 (24.73%), Postives = 121/279 (43.37%), Query Frame = 2
Query:    5 DQATNSKGNSEQRLMEHMCSALKSRVNPHEN--------PPPVAELFGKEHAESTQLLY-DFSPCFSLGFMAANLAILEATMEQTTGNTIGSNKIHVIDFDIGQGGQYMNLFHALSARLNGKPAIVKVTAVA------DGTASEEKLKAVRDKLSQVAERVGVCLRFNVAICL-KFDDLSRDSLGCEPDETLAVNFAFKLFRMPDESVSTENPRDELLRRVKGLSPSVVTLVEQETNT-------NTAPFMARVNEACAYYGALFDSIESTVLRDHSDR 772
            ++ ++  G++EQ+L  +   AL +R+                  +    E    T L + + SP  + G +AAN AILEA          G  KIH++D       Q+  L  AL+ R +  P +   T V       D TAS   +K + +++ + A  +GV  +FN+   +    +   + L  +PDE LA+N    +  +     S  +PRD ++   + L P +VT+VE+E +            F+    E   ++   F+S E +  R  ++R
Sbjct:  170 NELSSPYGDTEQKLASYFLQALFNRMTGSGERCYRTMVTAAATEKTCSFESTRKTVLKFQEVSPWATFGHVAANGAILEAVD--------GEAKIHIVDISSTFCTQWPTLLEALATRSDDTPHLRLTTVVVANKFVNDQTASHRMMKEIGNRMEKFARLMGVPFKFNIIHHVGDLSEFDLNELDVKPDEVLAINCVGAMHGI----ASRGSPRDAVISSFRRLRPRIVTVVEEEADLVGEEEGGFDDEFLRGFGECLRWFRVCFESWEESFPRTSNER 436          
BLAST of CN188892 vs. ExPASy Swiss-Prot
Match: SCL31_ARATH (Scarecrow-like protein 31 OS=Arabidopsis thaliana GN=SCL31 PE=2 SV=2)

HSP 1 Score: 73.9442 bits (180), Expect = 1.059e-12
Identity = 60/260 (23.08%), Postives = 112/260 (43.08%), Query Frame = 2
Query:   26 GNSEQRLMEHMCSALKSRVNPHENP--PPVAELFGKEHAESTQLLYDFS------PCFSLGFMAANLAILEATMEQTTGNTIGSNKIHVIDFDIGQGGQYMNLFHALSARLNG--KPAIVKVTAVADGTASEEKLKAVRDKLSQVAERVGVCLRFNVAICLKFDDLSRDSLGCEPDETLAVNFAFKLFRMPDESVSTEN-PRDELLRRVKGLSPSVVTLVEQETNTNTAPFMARVNEACAYYGALFDSIESTVLRDHSDR 772
            G++ QRL     +AL++R+            +    +   + Q+L  +S      P  +L +  +N  IL+A  + +         +H++DF I  G Q+      LS    G  K  I  +     G    E+++    +L++  +R GV   +N      ++ +  +     P+E LAVN   +   + D     E+ PRD  L+ ++ ++P+V        + N   F  R  EA  +Y ALFD   +T+ +++ +R
Sbjct:  316 GDASQRLAHFFANALEARLEGSTGTMIQSYYDSISSKKRTAAQILKSYSVFLSASPFMTLIYFFSNKMILDAAKDASV--------LHIVDFGILYGFQWPMFIQHLSKSNPGLRKLRITGIEIPQHGLRPTERIQDTGRRLTEYCKRFGVPFEYNAIASKNWETIKMEEFKIRPNEVLAVNAVLRFKNLRDVIPGEEDCPRDGFLKLIRDMNPNVFLSSTVNGSFNAPFFTTRFKEALFHYSALFDLFGATLSKENPER 567          
BLAST of CN188892 vs. ExPASy Swiss-Prot
Match: SCL26_ARATH (Scarecrow-like protein 26 OS=Arabidopsis thaliana GN=SCL26 PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.059e-12
Identity = 59/206 (28.64%), Postives = 103/206 (50.00%), Query Frame = 2
Query:  146 QLLYDFSPCFSLGFMAANLAILEATMEQTTGNTIGSNKIHVIDFDIGQGGQYMNLFHALSARLNGKPA-IVKVTAVADGTASEEKLKAVRD---KLSQVAERVGVCLRFNVAIC-LKFDDLSRDSLGCEPDETLAVNFAFKLFRMPDESVSTENPRDELLRRVKGLSPSVVTLVEQETN-TNTAPFMARVNEACAYYGALFDSIES 745
            +LL + SP  + G++ A  AILEA   +         +IH++D+DI +G Q+ +L  AL +R  G  A  +++TA++  T  ++ + AV++   +L+  A+ +G    F+   C L  +  S  SL     E + +N    +  +P  S  T +     L   K L+P +VTLV +E        F+ R  +    + A+FDS+E+
Sbjct:  185 ELLQNMSPYVNFGYLTATQAILEAVKYE--------RRIHIVDYDINEGVQWASLMQALVSRNTGPSAQHLRITALSRATNGKKSVAAVQETGRRLTAFADSIG--QPFSYQHCKLDTNAFSTSSLKLVRGEAVVINC---MLHLPRFSHQTPSSVISFLSEAKTLNPKLVTLVHEEVGLMGNQGFLYRFMDLLHQFSAIFDSLEA 377          
BLAST of CN188892 vs. ExPASy Swiss-Prot
Match: SCL28_ARATH (Scarecrow-like protein 28 OS=Arabidopsis thaliana GN=SCL28 PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 4.024e-12
Identity = 47/171 (27.49%), Postives = 88/171 (51.46%), Query Frame = 2
Query:  248 GSNKIHVIDFDIGQGGQYMNLFHALSARLNGKPAIVKVTAVADGTASEEKLKAVRDKLSQVAERVGVCLRFNVAICLKFDDLSRDSLGCEPDETLAVNFAFKLFRMPDESVSTENPRDELLRRVKGLSPSVVTLVEQETNTNTAPFMARVNEACAYYGALFDSIESTVLRD 760
            G  ++H+IDFDI QG Q+ + F +L++R+N  P  V++T + +   S+ +L    D+L   AE + +   F+  +  + +D+    L  +  E++AVN   ++ +   +   T     + L  ++  +P  + L EQE   N+     RV  +  YY A+FD+I + +  D
Sbjct:  382 GKERVHIIDFDIKQGLQWPSFFQSLASRIN-PPHHVRITGIGE---SKLELNETGDRLHGFAEAMNLQFEFHPVVD-RLEDVRLWMLHVKEGESVAVNCVMQMHKTLYD--GTGAAIRDFLGLIRSTNPIALVLAEQEAEHNSEQLETRVCNSLKYYSAMFDAIHTNLATD 545          
BLAST of CN188892 vs. ExPASy Swiss-Prot
Match: SCL32_ARATH (Scarecrow-like protein 32 OS=Arabidopsis thaliana GN=SCL32 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 8.964e-12
Identity = 68/262 (25.95%), Postives = 114/262 (43.51%), Query Frame = 2
Query:   26 GNSEQRLMEHMCSALKSRVNPHENPP--------PVAELFGKEHAESTQLLYDFSPCFSLGFMAANLAILEATMEQTTGNTIGSNKIHVIDFDIGQGGQYMNLFHALSARLNGKPAIVKVTAVADG-------TASEEKLKAVRDKLSQVAERVGVCLRFNVAICLKFDDLSR--DSLGCEP---DETLAVNFAFKLFRMPDESV--STENPRDELLRRVKGLSPSVVTLVEQETNTNTAPFMARVNEACAYYGALFDSIES 745
            G+S QRL      AL SR    + P         P A+   +          D +P    GF+AAN AIL A          G + +H++D  +    Q   L  A+++RLN  P ++K+T V+           S E+L +   KL   A    + + F +      D  S     L   P   +E L VN    L  +P+E +  S+ + R   L++++ L+P +VTL+E++ +  +   + R+  A  Y+   FD+ ++
Sbjct:   61 GDSTQRLTSAFLRALLSRA-VSKTPTLSSTISFLPQADELHRFSVVELAAFVDLTPWHRFGFIAANAAILTAVE--------GYSTVHIVDLSLTHCMQIPTLIDAMASRLNKPPPLLKLTVVSSSDHFPPFINISYEELGS---KLVNFATTRNITMEFTIVPSTYSDGFSSLLQQLRIYPSSFNEALVVNCHMMLRYIPEEPLTSSSSSLRTVFLKQLRSLNPRIVTLIEEDVDLTSENLVNRLKSAFNYFWIPFDTTDT 310          
BLAST of CN188892 vs. ExPASy Swiss-Prot
Match: SCL27_ARATH (Scarecrow-like protein 27 OS=Arabidopsis thaliana GN=SCL27 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.997e-11
Identity = 68/255 (26.67%), Postives = 117/255 (45.88%), Query Frame = 2
Query:   38 QRLMEHMCSALKSRVNPHENPPPVAELFGKEHAESTQLLYDFSPCFSLGFMAANLAILEATMEQTTGNTIGSNKIHVIDFDIGQGGQYMNLFHALSARLNG----KPAIVKVTAVA--DGTASEE-KLKAVRDKLSQVAERVGVCLRFNVAICLKFDDLSRD-----SLGCEPDETLAVNFAFKLFRMPDESVSTENPRDELLRRVKGLSPSVVTLVEQETNTNTAPFMARVNEACAYYGALFDSIESTVLRDHS 766
            QR   H+  AL S ++   +PP +          + +   + SP        AN +ILE+  E       G ++IH+IDFD+G GGQ+ +L   L++ + G    + + +K+T  A    T S+E +L+   + L   A  V +     +   L  + L        SL     E +AVN       +P  SV++      +LR +K LSP++V   ++  + N APF   V  +  Y+ +L +S+++   +D S
Sbjct:  315 QRAASHIAEALLSLIHNESSPPLITPENLILRIAAYRSFSETSPFLQFVNFTANQSILESCNES------GFDRIHIIDFDVGYGGQWSSLMQELASGVGGRRRNRASSLKLTVFAPPPSTVSDEFELRFTEENLKTFAGEVKIPFEIEL---LSVELLLNPAYWPLSLRSSEKEAIAVN-------LPVNSVAS-GYLPLILRFLKQLSPNIVVCSDRGCDRNDAPFPNAVIHSLQYHTSLLESLDANQNQDDS 552          
BLAST of CN188892 vs. ExPASy Swiss-Prot
Match: SCL23_ARATH (Scarecrow-like protein 23 OS=Arabidopsis thaliana GN=SCL23 PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 4.449e-11
Identity = 62/259 (23.94%), Postives = 119/259 (45.95%), Query Frame = 2
Query:   26 GNSEQRLMEHMCSALKSRVNPHE--------NPPPVAELFGKEHAESTQLLYDFSPCFSLGFMAANLAILEATMEQTTGNTIGSNKIHVIDFDIGQGGQYMNLFHALSARLNGKPAIVKVTAVADGTASEEKLKAVRDKLSQVAERVGVCLRFNVAICLKFDDLSRDSLGCEPDETLAVNF-AFKLFRMPDESVSTENPRDELLRRVKGLSPSVVTLVEQETN-TNTAPFMARVNEACAYYGALFDSIESTVLRDHSDR 772
            G+S +R++ +   AL++RV            +  P+  +  ++   + Q     SP        AN AI +A          G + +H+ID D+ QG Q+  LFH L++R    P  ++   +    +S + L +   +L+  A  + +   F+    +  + +    L     E + V++   +L+ +   ++ T     E+LRR+K   P+++T+VEQE +  +   F+ R  EA  YY ALFD++   +  +  +R
Sbjct:   74 GSSPERVVAYFAQALQTRVISSYLSGACSPLSEKPLTVVQSQKIFSALQTYNSVSPLIKFSHFTANQAIFQALD--------GEDSVHIIDLDVMQGLQWPALFHILASR----PRKLRSIRITGFGSSSDLLASTGRRLADFASSLNLPFEFHPIEGIIGNLIDPSQLATRQGEAVVVHWMQHRLYDVTGNNLETL----EILRRLK---PNLITVVEQELSYDDGGSFLGRFVEALHYYSALFDALGDGLGEESGER 313          
The following BLAST results are available for this feature:
BLAST of CN188892 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 49
Match NameE-valueIdentityDescription
NSP2_MEDTR2.134e-1327.31Nodulation-signaling pathway 2 protein OS=Medicago... [more]
SCL33_ARATH3.639e-1323.55Scarecrow-like protein 33 OS=Arabidopsis thaliana ... [more]
SHR_ARATH1.059e-1224.73Protein SHORT-ROOT OS=Arabidopsis thaliana GN=SHR ... [more]
SCL31_ARATH1.059e-1223.08Scarecrow-like protein 31 OS=Arabidopsis thaliana ... [more]
SCL26_ARATH1.059e-1228.64Scarecrow-like protein 26 OS=Arabidopsis thaliana ... [more]
SCL28_ARATH4.024e-1227.49Scarecrow-like protein 28 OS=Arabidopsis thaliana ... [more]
SCL32_ARATH8.964e-1225.95Scarecrow-like protein 32 OS=Arabidopsis thaliana ... [more]
SCL27_ARATH1.997e-1126.67Scarecrow-like protein 27 OS=Arabidopsis thaliana ... [more]
SCL23_ARATH4.449e-1123.94Scarecrow-like protein 23 OS=Arabidopsis thaliana ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0006P18_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0006P18, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188892 ID=CN188892; Name=CN188892; organism=Citrus sinensis; type=EST; length=773bp
GGCTGACCAGGCGACGAATTCGAAAGGGAATTCGGAACAGAGGTTGATGG
AGCACATGTGTTCAGCGTTGAAGTCGCGCGTGAACCCACACGAGAACCCG
CCGCCTGTCGCTGAGTTGTTCGGCAAAGAACACGCCGAGTCGACTCAGTT
GCTTTACGATTTCTCCCCGTGTTTCAGCCTGGGCTTCATGGCTGCTAATC
TCGCCATTCTTGAAGCTACAATGGAGCAAACAACAGGTAACACAATTGGC
AGCAATAAGATTCATGTTATTGATTTCGATATCGGCCAAGGCGGACAGTA
CATGAATCTCTTCCACGCGCTCTCCGCGCGTCTAAACGGGAAACCCGCAA
TCGTTAAAGTCACAGCCGTGGCTGATGGTACTGCCAGTGAAGAGAAACTG
AAGGCCGTTCGTGATAAGCTGAGTCAAGTTGCGGAACGTGTTGGAGTTTG
TCTGCGTTTCAACGTAGCAATCTGTTTGAAATTCGATGATCTGAGTCGCG
ACTCACTGGGTTGCGAGCCGGATGAAACACTAGCTGTGAATTTCGCTTTC
AAGCTATTTCGAATGCCGGACGAGAGCGTGTCAACGGAGAATCCGAGGGA
CGAGCTGCTCCGGCGTGTAAAGGGGTTGTCACCGAGTGTGGTAACGTTGG
TGGAGCAAGAAACGAACACAAATACGGCGCCGTTCATGGCGCGCGTCAAC
GAGGCGTGTGCATATTACGGAGCGTTGTTTGACTCGATCGAGTCGACCGT
GCTGAGAGACCACTCGGACCGAG
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