CN182119

Overview
NameCN182119
Unique NameCN182119
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length598
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN182119 vs. ExPASy Swiss-Prot
Match: CML2_ORYSJ (Putative calmodulin-like protein 2 OS=Oryza sativa subsp. japonica GN=CML2 PE=3 SV=2)

HSP 1 Score: 72.0182 bits (175), Expect = 2.507e-12
Identity = 41/142 (28.87%), Postives = 70/142 (49.30%), Query Frame = 3
Query:  171 ITKED--ELKQVFRHFDGDGDGKISALELRAYFGSIGEYMSYEEARAAIXXXXXXXXXXXXXQDFTRMXXXXXXXXXXXXXXXXAFEMFELEKKGCITPKGLQRMLNRLGDSKSYDKCVAMIQVFDTDGNGVLDYHEFSQMM 590
            +TKE   E ++ F  FD DGDG I++ EL    GS+G+  +  E +  +             ++F  +                AF +F+ ++ G ITP  L+ ++  LGD  S D+   M+   D+DG+G ++Y+EF ++M
Sbjct:    4 LTKEQIAEFREAFNLFDKDGDGTITSKELGTVMGSLGQSPTEAELKKMVEEVDADGSGSIEFEEFLGLLARKLRDTGAEDDIREAFRVFDKDQNGFITPDELRHVMANLGDPLSDDELADMLHEADSDGDGQINYNEFLKVM 145          
BLAST of CN182119 vs. ExPASy Swiss-Prot
Match: CML25_ORYSJ (Probable calcium-binding protein CML25/26 OS=Oryza sativa subsp. japonica GN=CML25 PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 2.507e-12
Identity = 52/139 (37.41%), Postives = 68/139 (48.92%), Query Frame = 3
Query:  198 VFRHFDGDGDGKISALELRAYF-GSIGEYMSYEEARAAIXXXXXXXXXXXXXQDFTRM---XXXXXXXXXXXXXXXXAFEMF-ELEKKGCITPKGLQRMLNRLGDSK---SYDKCVAMIQVFDTDGNGVLDYHEFSQMM 590
            VF  FD DGDGK+SA ELR     ++GE +S EEA A +              +F R+                   AF+M+ E E+   ITP  L+RML RLG        ++C AMI  FD +G+GVL + EF  MM
Sbjct:    8 VFAAFDKDGDGKVSASELRGCMAAALGEEVSEEEAAAILATADTDGDGLLDHHEFMRLSAAHQLQEPAEESLRCLREAFDMYAEEEETAVITPASLRRMLRRLGSEHQRLEMEECRAMICRFDLNGDGVLSFDEFRVMM 146          
BLAST of CN182119 vs. ExPASy Swiss-Prot
Match: CML10_ORYSJ (Probable calcium-binding protein CML10 OS=Oryza sativa subsp. japonica GN=CML10 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 4.276e-12
Identity = 42/141 (29.79%), Postives = 69/141 (48.94%), Query Frame = 3
Query:  174 TKEDELKQVFRHFDGDGDGKISALELRAYFGSIGEYMSYEEARAAIXXXXXXXXXXXXXQDFTRMXXXXXXXXXXXXXXXX-AFEMFELEKKGCITPKGLQRMLNRLGDSKSYDKCVAMIQVFDTDGNGVLDYHEFSQMMA 593
            T E+E+++VFR FD +GDG+IS  EL A F S+G   + +E    +              +F  +                 AF +F+ +  G I+   L R+L+ LG+  +  +C  MI+  D +G+G++ + EF  MMA
Sbjct:   36 TPEEEMERVFRKFDANGDGRISRSELGALFESLGHAATDDELARMMAEADADGDGFISLDEFAALNATASGDAAAVEEDLRHAFRVFDADGNGTISAAELARVLHGLGEKATVQQCRRMIEGVDQNGDGLISFEEFKVMMA 176          
BLAST of CN182119 vs. ExPASy Swiss-Prot
Match: CML23_ARATH (Probable calcium-binding protein CML23 OS=Arabidopsis thaliana GN=CML23 PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 7.294e-12
Identity = 39/138 (28.26%), Postives = 67/138 (48.55%), Query Frame = 3
Query:  183 DELKQVFRHFDGDGDGKISALELRAYFGSIGEYMSYEEARAAIXXXXXXXXXXXXXQDFTRMXXXXXXXXXXXXXXXX--AFEMFELEKKGCITPKGLQRMLNRLGDSKSYDKCVAMIQVFDTDGNGVLDYHEFSQMM 590
            +++K+VF+ FD + DGKIS  EL+   G++    S EE +A +              +F  +                  AF++++L++ G I+   L  ++  LG+  S   C  MI   D+DG+G +D+ EF +MM
Sbjct:   14 EDIKKVFQRFDKNNDGKISIDELKDVIGALSPNASQEETKAMMKEFDLDGNGFIDLDEFVALFQISDQSSNNSAIRDLKEAFDLYDLDRNGRISANELHSVMKNLGEKCSIQDCQRMINKVDSDGDGCVDFEEFKKMM 151          
BLAST of CN182119 vs. ExPASy Swiss-Prot
Match: CML3_ORYSJ (Calmodulin-like protein 3 OS=Oryza sativa subsp. japonica GN=CML3 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.244e-11
Identity = 40/142 (28.17%), Postives = 69/142 (48.59%), Query Frame = 3
Query:  171 ITKED--ELKQVFRHFDGDGDGKISALELRAYFGSIGEYMSYEEARAAIXXXXXXXXXXXXXQDFTRMXXXXXXXXXXXXXXXXAFEMFELEKKGCITPKGLQRMLNRLGDSKSYDKCVAMIQVFDTDGNGVLDYHEFSQMM 590
            +TKE   E ++ F  FD DGDG I++ EL    GS+G+  +  E +  +             ++F  +                AF +F+ ++ G ITP  L+ ++  L D  S D+   M+   D+DG+G ++Y+EF ++M
Sbjct:    4 LTKEQIAEFREAFNLFDKDGDGTITSKELGTVMGSLGQSPTEAELKKMVEEVDADGSGSIEFEEFLGLLARKLRDTGAEDDIRDAFRVFDKDQNGFITPDELRHVMANLSDPLSDDELADMLHEADSDGDGQINYNEFLKVM 145          
BLAST of CN182119 vs. ExPASy Swiss-Prot
Match: CML37_ARATH (Calcium-binding protein CML37 OS=Arabidopsis thaliana GN=CML37 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 3.620e-11
Identity = 43/137 (31.39%), Postives = 66/137 (48.18%), Query Frame = 3
Query:  183 DELKQVFRHFDGDGDGKISALELRAYFGSIGEYMSYEEARAAIXXXXXXXXXXXXXQDFTR-MXXXXXXXXXXXXXXXXAFEMFELEKKGCITPKGLQRMLNRLGDSKSYDKCVAMIQVFDTDGNGVLDYHEFSQMM 590
            +EL+ VF + D + DGKIS  EL++    +G  +S  E    +             ++F + M                AF M+ +E +  IT   L+R L+RLG+S + D C  MI+ FD + +GVL + EF  MM
Sbjct:   48 NELRTVFDYMDANSDGKISGEELQSCVSLLGGALSSREVEEVVKTSDVDGDGFIDFEEFLKLMEGEDGSDEERRKELKEAFGMYVMEGEEFITAASLRRTLSRLGESCTVDACKVMIRGFDQNDDGVLSFDEFVLMM 184          
BLAST of CN182119 vs. ExPASy Swiss-Prot
Match: ALL8_OLEEU (Calcium-binding allergen Ole e 8 OS=Olea europaea PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 3.620e-11
Identity = 41/143 (28.67%), Postives = 67/143 (46.85%), Query Frame = 3
Query:  171 ITKEDELKQVFRHFDGDGDGKISALELRAYFGSIGEYMSYEEARAAIXXXXXXXXXXXXXQDFT---RMXXXXXXXXXXXXXXXXAFEMFELEKKGCITPKGLQRMLNRLGDSKSYDKCVAMIQVFDTDGNGVLDYHEFSQMM 590
            + + +E++ VF  FD +GDGKIS  EL     ++G   S EE    +             Q+F    +                 AFE+++ +  G I+   L ++L RLG+  +   CV MI+  D+DG+G + + EF +MM
Sbjct:   15 LQEPNEVQGVFNRFDANGDGKISGDELAGVLKALGSNTSKEEIGRIMEEIDTDKDGFINVQEFAAFVKAETDPYPSSGGENELKEAFELYDQDHNGLISSVELHKILTRLGERYAEHDCVEMIKSVDSDGDGYVSFEEFKKMM 157          
The following BLAST results are available for this feature:
BLAST of CN182119 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 17
Match NameE-valueIdentityDescription
CML2_ORYSJ2.507e-1228.87Putative calmodulin-like protein 2 OS=Oryza sativa... [more]
CML25_ORYSJ2.507e-1237.41Probable calcium-binding protein CML25/26 OS=Oryza... [more]
CML10_ORYSJ4.276e-1229.79Probable calcium-binding protein CML10 OS=Oryza sa... [more]
CML23_ARATH7.294e-1228.26Probable calcium-binding protein CML23 OS=Arabidop... [more]
CML3_ORYSJ1.244e-1128.17Calmodulin-like protein 3 OS=Oryza sativa subsp. j... [more]
CML37_ARATH3.620e-1131.39Calcium-binding protein CML37 OS=Arabidopsis thali... [more]
ALL8_OLEEU3.620e-1128.67Calcium-binding allergen Ole e 8 OS=Olea europaea ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0001P16_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001P16, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN182119 ID=CN182119; Name=CN182119; organism=Citrus sinensis; type=EST; length=598bp
GGCTGCAGGGTTCTAAGCCATCTAATTCTAAGTGGTTCTTTTCTAACAAG
GGTCATGGGTTAAGCCTTCACCGTCGTCGATCAAAGTCAAAGTCTAGTTC
TTCATCGTCAACAACAACAACAACATTAAGCTCTCCAAACTCCTCCTTGT
CTGCATGCGAACCCAAAAAGATCACAAAAGAAGATGAGTTGAAGCAAGTC
TTTCGTCATTTTGATGGTGATGGAGACGGGAAAATTTCGGCTCTCGAACT
TAGGGCTTACTTTGGTTCCATTGGTGAGTACATGTCATACGAAGAGGCTC
GAGCAGCGATTGATGATTTTGACACCGATGGTGACAGTTTATTGGATTTT
CAAGATTTCACGAGGATGCTGCTCAAAGACGATCGAGGCGATGGCGATGA
CGAGGATCTGAAGAAGGCCTTTGAGATGTTTGAATTGGAGAAGAAAGGGT
GCATAACTCCAAAAGGTTTGCAAAGGATGTTGAATCGCCTTGGAGATTCT
AAATCTTATGACAAGTGCGTTGCCATGATTCAAGTCTTTGATACTGATGG
CAACGGAGTTCTTGATTATCATGAGTTTTCCCAAATGATGGCTTAATT
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