CN182113

Overview
NameCN182113
Unique NameCN182113
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length631
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN182113 vs. ExPASy Swiss-Prot
Match: ATPB_SILST (ATP synthase subunit beta OS=Silicibacter sp. (strain TM1040) GN=atpD PE=3 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 2.705e-31
Identity = 68/113 (60.18%), Postives = 85/113 (75.22%), Query Frame = 2
Query:  290 AIGQVCQVIGAVVDVRFDEGLPPILTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAP 628
            A G+V Q+IGAVVDV+FD  LP IL AL   ++  +LVLEVAQH+GE  VRTIAMD TEGLVRGQ V +TG+PI++PVG  TLGRI+NV+GEP+DE   +  +    IH+ AP
Sbjct:    4 AKGKVTQIIGAVVDVQFDGELPAILNALTTDNNGKKLVLEVAQHLGENSVRTIAMDATEGLVRGQEVTDTGAPISIPVGNATLGRILNVVGEPVDEGEPIVAKETRAIHQPAP 116          
BLAST of CN182113 vs. ExPASy Swiss-Prot
Match: ATPB_GEOSM (ATP synthase subunit beta OS=Geobacter sp. (strain M21) GN=atpD PE=3 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 3.533e-31
Identity = 72/118 (61.02%), Postives = 85/118 (72.03%), Query Frame = 2
Query:  296 GQVCQVIGAVVDVRFDEG-LPPILTALEVV-----DHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPA 631
            G++ QVIGAV+DV F+ G LPPI  AL V      D    LVLEVAQH+GE  VRTIAMD T+GLVRGQ+V + G  I+VPVG+ TLGRI+NVIGEP+DE G +  E    IHREAPA
Sbjct:    6 GKISQVIGAVIDVEFEPGKLPPIYQALRVTNPAIDDQEFNLVLEVAQHLGENAVRTIAMDSTDGLVRGQQVKDMGKQISVPVGKKTLGRILNVIGEPVDEMGPIGNEKEYGIHREAPA 123          
BLAST of CN182113 vs. ExPASy Swiss-Prot
Match: ATPB_RICFE (ATP synthase subunit beta OS=Rickettsia felis GN=atpD PE=3 SV=2)

HSP 1 Score: 133.65 bits (335), Expect = 7.870e-31
Identity = 68/114 (59.65%), Postives = 85/114 (74.56%), Query Frame = 2
Query:  293 IGQVCQVIGAVVDVRFDEG--LPPILTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAP 628
            IG++ Q+I AVVDV+F     LP IL ALE  +   R+VLEVAQH+G+  VR IAMD TEGLVRG  V++TGSPI +PVG  TLGRIMNV+GEPID KGD+K+ +   I++ AP
Sbjct:    5 IGKITQIISAVVDVKFTNNGELPEILNALECYNDKQRIVLEVAQHIGDDTVRCIAMDSTEGLVRGVEVIDTGSPIRIPVGTETLGRIMNVVGEPIDGKGDIKSSNISSIYKSAP 118          
BLAST of CN182113 vs. ExPASy Swiss-Prot
Match: ATPB_RICAH (ATP synthase subunit beta OS=Rickettsia akari (strain Hartford) GN=atpD PE=3 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 7.870e-31
Identity = 68/114 (59.65%), Postives = 85/114 (74.56%), Query Frame = 2
Query:  293 IGQVCQVIGAVVDVRFDEG--LPPILTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAP 628
            IG++ Q+I AVVDV+F     LP IL ALE  +   R+VLEVAQH+G+  VR IAMD TEGLVRG  V++TGSPI +PVG  TLGRIMNV+GEPID KGD+K+ +   I++ AP
Sbjct:    5 IGKITQIISAVVDVKFTNNGELPEILNALECYNDKQRIVLEVAQHIGDDTVRCIAMDSTEGLVRGVEVMDTGSPICIPVGTETLGRIMNVVGEPIDGKGDIKSSNISAIYKSAP 118          
BLAST of CN182113 vs. ExPASy Swiss-Prot
Match: ATPB_CARHZ (ATP synthase subunit beta OS=Carboxydothermus hydrogenoformans (strain Z-2901 / DSM 6008) GN=atpD PE=3 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 7.870e-31
Identity = 66/121 (54.55%), Postives = 88/121 (72.73%), Query Frame = 2
Query:  293 IGQVCQVIGAVVDVRFDEG-LPPILTALEV--------VDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAP 628
            +G+V QVIG VVDV F+ G +PPI  AL++         +  + L LEVAQH+G   VR +AM  T+GLVRG +V++TG+PITVPVGR  LGR++NV+GEPID KG ++++HY PIHR AP
Sbjct:    3 VGRVVQVIGVVVDVEFEPGKVPPIYNALKIRSEDQDTPTEVPINLTLEVAQHLGNNRVRAVAMSSTDGLVRGMKVVDTGAPITVPVGRPVLGRLLNVLGEPIDGKGPVESDHYYPIHRPAP 123          
BLAST of CN182113 vs. ExPASy Swiss-Prot
Match: ATPB_RICM5 (ATP synthase subunit beta OS=Rickettsia massiliae (strain Mtu5) GN=atpD PE=3 SV=2)

HSP 1 Score: 133.265 bits (334), Expect = 1.028e-30
Identity = 68/114 (59.65%), Postives = 85/114 (74.56%), Query Frame = 2
Query:  293 IGQVCQVIGAVVDVRFDEG--LPPILTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAP 628
            IG++ Q+I AVVDV+F     LP IL ALE  +   R+VLEVAQH+G+  VR IAMD TEGLVRG  V++TGSPI +PVG  TLGRIMNV+GEPID KGD+K+ +   I++ AP
Sbjct:    5 IGKITQIISAVVDVKFTNNGELPEILNALECYNDKQRIVLEVAQHIGDDTVRCIAMDSTEGLVRGVEVIDTGSPIRIPVGTETLGRIMNVVGEPIDGKGDIKSSNISSIYKPAP 118          
BLAST of CN182113 vs. ExPASy Swiss-Prot
Match: ATPB_GEOBB (ATP synthase subunit beta OS=Geobacter bemidjiensis (strain Bem / ATCC BAA-1014 / DSM 16622) GN=atpD PE=3 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 1.028e-30
Identity = 71/117 (60.68%), Postives = 84/117 (71.79%), Query Frame = 2
Query:  296 GQVCQVIGAVVDVRFDEG-LPPILTALEVV-----DHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAP 628
            G++ QVIGAV+DV F+ G LPPI  AL V      D    LVLEVAQH+GE  VRTIAMD T+GLVRGQ+V + G  I+VPVG+ TLGRI+NVIGEP+DE G +  E    IHREAP
Sbjct:    6 GKISQVIGAVIDVEFEPGKLPPIYQALRVTNPAIDDQEFNLVLEVAQHLGENAVRTIAMDSTDGLVRGQQVKDMGKQISVPVGKKTLGRILNVIGEPVDEMGPIGNEKEYGIHREAP 122          
BLAST of CN182113 vs. ExPASy Swiss-Prot
Match: ATPB_DESDG (ATP synthase subunit beta OS=Desulfovibrio desulfuricans (strain G20) GN=atpD PE=3 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 1.753e-30
Identity = 70/117 (59.83%), Postives = 85/117 (72.65%), Query Frame = 2
Query:  293 IGQVCQVIGAVVDVRFDEG-LPPILTALEVVDHS----VRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAP 628
            IG++ QVIGAVVDV F +G LP IL AL + + +      L+ EVAQH+G+ VVRTIAMD TEGLVRG  V +TG+PI VPVG  +LGRIMNV+G P+DE GD+     LPIHR AP
Sbjct:    4 IGKITQVIGAVVDVEFADGNLPNILNALVIKNPNNADCPELICEVAQHLGDNVVRTIAMDATEGLVRGMEVTDTGNPIMVPVGSASLGRIMNVVGRPVDEMGDIDAAKSLPIHRPAP 120          
BLAST of CN182113 vs. ExPASy Swiss-Prot
Match: ATPB_GEOLS (ATP synthase subunit beta OS=Geobacter lovleyi (strain ATCC BAA-1151 / DSM 17278 / SZ) GN=atpD PE=3 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 2.290e-30
Identity = 72/119 (60.50%), Postives = 85/119 (71.43%), Query Frame = 2
Query:  293 IGQVCQVIGAVVDVRFDEG-LPPILTALEVVDHSV-----RLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPA 631
            IG++ QVIGAV+DV F+ G LP I  AL V + ++      LVLEVAQH+GE  VRTIAMD T+GL RGQ V++TG  I  PVGR TLGRIMNVIGEP+DE G +  E    IHREAPA
Sbjct:    5 IGKISQVIGAVIDVEFEPGKLPEIYHALRVTNPAIDDRENNLVLEVAQHLGENSVRTIAMDSTDGLKRGQAVIDTGKQICAPVGRKTLGRIMNVIGEPVDEMGPIGNEKEYGIHREAPA 123          
BLAST of CN182113 vs. ExPASy Swiss-Prot
Match: ATPB_ALKOO (ATP synthase subunit beta OS=Alkaliphilus oremlandii (strain OhILAs) GN=atpD PE=3 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 2.991e-30
Identity = 63/117 (53.85%), Postives = 85/117 (72.65%), Query Frame = 2
Query:  284 KGAIGQVCQVIGAVVDVRFD-EGLPPILTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPA 631
            +G +G++ Q+IG V+D+RF  E LP +L A+E+     ++V+EV+QH+G+  VR +AM  T+GLVRG    +TG PITVPVGR TLGRI NVIGEP+DEKG +  E   PIHR AP+
Sbjct:    3 EGNVGKLVQIIGPVIDIRFSRENLPNLLNAIEIEGPDGKIVVEVSQHIGDDTVRCVAMKSTDGLVRGMEAKDTGGPITVPVGRATLGRIFNVIGEPVDEKGAVAAEAKAPIHRPAPS 119          
The following BLAST results are available for this feature:
BLAST of CN182113 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
ATPB_SILST2.705e-3160.18ATP synthase subunit beta OS=Silicibacter sp. (str... [more]
ATPB_GEOSM3.533e-3161.02ATP synthase subunit beta OS=Geobacter sp. (strain... [more]
ATPB_RICFE7.870e-3159.65ATP synthase subunit beta OS=Rickettsia felis GN=a... [more]
ATPB_RICAH7.870e-3159.65ATP synthase subunit beta OS=Rickettsia akari (str... [more]
ATPB_CARHZ7.870e-3154.55ATP synthase subunit beta OS=Carboxydothermus hydr... [more]
ATPB_RICM51.028e-3059.65ATP synthase subunit beta OS=Rickettsia massiliae ... [more]
ATPB_GEOBB1.028e-3060.68ATP synthase subunit beta OS=Geobacter bemidjiensi... [more]
ATPB_DESDG1.753e-3059.83ATP synthase subunit beta OS=Desulfovibrio desulfu... [more]
ATPB_GEOLS2.290e-3060.50ATP synthase subunit beta OS=Geobacter lovleyi (st... [more]
ATPB_ALKOO2.991e-3053.85ATP synthase subunit beta OS=Alkaliphilus oremland... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS04_0001P13_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001P13, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN182113 ID=CN182113; Name=CN182113; organism=Citrus sinensis; type=EST; length=631bp
GAGGCTCATTCTCTCAACATTGAAGCCCTGACCAATGGCTTCACGTAGAC
TCTTATCATCTCTCCTTCGCTCGTCTGTCCGCCGATCTCCCTCCAAATCT
TCGCTTTCTAACTCATCTGTGTTCTCCCCTGCCGCCACGCGCCGCGCGTC
TCCTTATGGGCACCTCCTCTCGCGCGTCTCAGAGTACGCGACCTCAGCAG
CCGCCACTGCCCCACCGGCACAGACTCCGAAGTCGGATGTAAAGAAAGGC
GGCGGTGGTAAAATCACCGATGAGTTTACTGGAAAGGGCGCGATCGGTCA
GGTTTGTCAGGTCATCGGTGCCGTCGTTGATGTCAGATTTGACGAGGGGT
TGCCTCCGATTTTGACCGCGCTTGAAGTGGTAGATCACTCCGTTCGGTTA
GTGCTTGAGGTGGCTCAGCACATGGGTGAGGGTGTTGTTAGGACTATTGC
TATGGATGGAACTGAAGGGTTGGTTCGTGGCCAGCGCGTGCTCAATACTG
GCTCTCCAATCACTGTACCTGTGGGGAGAGTTACTCTGGGTCGTATTATG
AATGTCATTGGAGAGCCTATTGATGAGAAAGGCGATCTCAAAACTGAACA
TTACTTGCCCATCCACAGAGAGGCTCCAGCA
back to top