CN182105

Overview
NameCN182105
Unique NameCN182105
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length518
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN182105 vs. ExPASy Swiss-Prot
Match: VATL2_KLULA (V-type proton ATPase 16 kDa proteolipid subunit 2 OS=Kluyveromyces lactis GN=VMA11 PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 2.157e-21
Identity = 47/97 (48.45%), Postives = 68/97 (70.10%), Query Frame = 2
Query:  227 SCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYXXXXXXXXXXXXXXXXXMAIGIVGDAGVR 517
            SC+GAA GTAKSG+G++ +G  +PEL+MKS++PVVM+G+L +YGL++AV+I+ G++P  + Y LF+G+                  AIGIVGD GVR
Sbjct:   30 SCLGAAIGTAKSGIGISGIGTFKPELIMKSLIPVVMSGILAVYGLVVAVLIAGGLSP-TEDYTLFNGFMHLSCGLCVGFACLSSGYAIGIVGDVGVR 125          
BLAST of CN182105 vs. ExPASy Swiss-Prot
Match: VATL_ASCSU (V-type proton ATPase 16 kDa proteolipid subunit OS=Ascaris suum GN=12 PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 2.817e-21
Identity = 48/95 (50.53%), Postives = 65/95 (68.42%), Query Frame = 2
Query:  233 MGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYXXXXXXXXXXXXXXXXXMAIGIVGDAGVR 517
            +GAAYGTAKS VG++SMGVMRPEL+MKS++PV+MAG++GIYGL++A+++   +   +  Y L  G+                  AIGIVGDAGVR
Sbjct:   31 LGAAYGTAKSAVGISSMGVMRPELIMKSVIPVIMAGIIGIYGLVVAMVLRGKVTSASAGYTLDKGFAHLAAGLTCGLCGLGAGYAIGIVGDAGVR 125          
BLAST of CN182105 vs. ExPASy Swiss-Prot
Match: VATL2_CANGA (V-type proton ATPase 16 kDa proteolipid subunit 2 OS=Candida glabrata GN=VMA11 PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 3.680e-21
Identity = 48/97 (49.48%), Postives = 67/97 (69.07%), Query Frame = 2
Query:  227 SCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYXXXXXXXXXXXXXXXXXMAIGIVGDAGVR 517
            SC+GAA GTAKSG+G+A +G  +PEL+MKS++PVVM+G+L IYGL++AV+I+  ++P  + Y LF+G+                  AIGIVGD GVR
Sbjct:   30 SCLGAAIGTAKSGIGIAGIGTFKPELIMKSLIPVVMSGILAIYGLVVAVLIAGNLSP-TEEYTLFNGFMHLSCGLCVGFACLSSGYAIGIVGDVGVR 125          
BLAST of CN182105 vs. ExPASy Swiss-Prot
Match: VATL2_CAEEL (V-type proton ATPase 16 kDa proteolipid subunit 2/3 OS=Caenorhabditis elegans GN=vha-2 PE=2 SV=2)

HSP 1 Score: 100.908 bits (250), Expect = 3.680e-21
Identity = 48/95 (50.53%), Postives = 64/95 (67.37%), Query Frame = 2
Query:  233 MGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYXXXXXXXXXXXXXXXXXMAIGIVGDAGVR 517
            +GAAYGTAKS VG+ SMGVMRPEL+MKS++PV+MAG++GIYGL++A+++   +   +  Y L  G+                  AIGIVGDAGVR
Sbjct:   31 LGAAYGTAKSAVGICSMGVMRPELIMKSVIPVIMAGIIGIYGLVVAMVLKGKVTSASAGYDLNKGFAHLAAGLTCGLCGLGAGYAIGIVGDAGVR 125          
BLAST of CN182105 vs. ExPASy Swiss-Prot
Match: VATL2_CAEBR (V-type proton ATPase 16 kDa proteolipid subunit 2/3 OS=Caenorhabditis briggsae GN=vha-2 PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 3.680e-21
Identity = 48/95 (50.53%), Postives = 64/95 (67.37%), Query Frame = 2
Query:  233 MGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYXXXXXXXXXXXXXXXXXMAIGIVGDAGVR 517
            +GAAYGTAKS VG+ SMGVMRPEL+MKS++PV+MAG++GIYGL++A+++   +   +  Y L  G+                  AIGIVGDAGVR
Sbjct:   31 LGAAYGTAKSAVGICSMGVMRPELIMKSVIPVIMAGIIGIYGLVVAMVLKGKVQAASAGYDLNKGFAHLAAGLTCGLCGLGAGYAIGIVGDAGVR 125          
BLAST of CN182105 vs. ExPASy Swiss-Prot
Match: VATL_SHEEP (V-type proton ATPase 16 kDa proteolipid subunit OS=Ovis aries GN=ATP6V0C PE=2 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 8.198e-21
Identity = 55/122 (45.08%), Postives = 70/122 (57.38%), Query Frame = 2
Query:  152 MSSTFSGDETAPXXXXXXXXXXXXXSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYXXXXXXXXXXXXXXXXXMAIGIVGDAGVR 517
            MS   SG E A              S +GAAYGTAKSG G+A+M VMRPE++MKSI+PVVMAG++ IYGL++AV+I+  +N       L+  +                  AIGIVGDAGVR
Sbjct:    1 MSEAKSGPEYASFFAVMGASAAMVFSALGAAYGTAKSGTGIAAMSVMRPEMIMKSIIPVVMAGIIAIYGLVVAVLIANSLN---DGISLYRSFLQLGAGLSVGLSGLAAGFAIGIVGDAGVR 119          
BLAST of CN182105 vs. ExPASy Swiss-Prot
Match: VATL2_YEAST (V-type proton ATPase subunit c' OS=Saccharomyces cerevisiae GN=VMA11 PE=1 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 8.198e-21
Identity = 47/97 (48.45%), Postives = 67/97 (69.07%), Query Frame = 2
Query:  227 SCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYXXXXXXXXXXXXXXXXXMAIGIVGDAGVR 517
            SC+GAA GTAKSG+G+A +G  +PEL+MKS++PVVM+G+L IYGL++AV+I+  ++P  + Y LF+G+                  AIG+VGD GVR
Sbjct:   30 SCLGAAIGTAKSGIGIAGIGTFKPELIMKSLIPVVMSGILAIYGLVVAVLIAGNLSP-TEDYTLFNGFMHLSCGLCVGFACLSSGYAIGMVGDVGVR 125          
BLAST of CN182105 vs. ExPASy Swiss-Prot
Match: VATL_HUMAN (V-type proton ATPase 16 kDa proteolipid subunit OS=Homo sapiens GN=ATP6V0C PE=1 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 1.071e-20
Identity = 55/122 (45.08%), Postives = 70/122 (57.38%), Query Frame = 2
Query:  152 MSSTFSGDETAPXXXXXXXXXXXXXSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYXXXXXXXXXXXXXXXXXMAIGIVGDAGVR 517
            MS + SG E A              S +GAAYGTAKSG G+A+M VMRPE +MKSI+PVVMAG++ IYGL++AV+I+  +N       L+  +                  AIGIVGDAGVR
Sbjct:    1 MSESKSGPEYASFFAVMGASAAMVFSALGAAYGTAKSGTGIAAMSVMRPEQIMKSIIPVVMAGIIAIYGLVVAVLIANSLNDDIS---LYKSFLQLGAGLSVGLSGLAAGFAIGIVGDAGVR 119          
BLAST of CN182105 vs. ExPASy Swiss-Prot
Match: VATL_BOVIN (V-type proton ATPase 16 kDa proteolipid subunit OS=Bos taurus GN=ATP6V0C PE=1 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 1.826e-20
Identity = 54/122 (44.26%), Postives = 70/122 (57.38%), Query Frame = 2
Query:  152 MSSTFSGDETAPXXXXXXXXXXXXXSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYXXXXXXXXXXXXXXXXXMAIGIVGDAGVR 517
            MS   +G E A              S +GAAYGTAKSG G+A+M VMRPE++MKSI+PVVMAG++ IYGL++AV+I+  +N       L+  +                  AIGIVGDAGVR
Sbjct:    1 MSEAKNGPEYASFFAVMGASAAMVFSALGAAYGTAKSGTGIAAMSVMRPEMIMKSIIPVVMAGIIAIYGLVVAVLIANSLN---DGISLYRSFLQLGAGLSVGLSGLAAGFAIGIVGDAGVR 119          
BLAST of CN182105 vs. ExPASy Swiss-Prot
Match: VATL2_ASHGO (V-type proton ATPase 16 kDa proteolipid subunit 2 OS=Ashbya gossypii GN=VMA11 PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 1.826e-20
Identity = 46/97 (47.42%), Postives = 67/97 (69.07%), Query Frame = 2
Query:  227 SCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYXXXXXXXXXXXXXXXXXMAIGIVGDAGVR 517
            S +GAA GTAKSG+G++ +G  RPEL+MKS++PVVM+G+L +YGL++AV+++ G++P  + Y LF+G+                  AIGIVGD GVR
Sbjct:   29 SSLGAAIGTAKSGIGISGIGTFRPELIMKSLIPVVMSGILAVYGLVVAVLVAGGLSP-TEEYTLFNGFMHLAAGLCVGFACLSSGYAIGIVGDVGVR 124          
The following BLAST results are available for this feature:
BLAST of CN182105 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 44
Match NameE-valueIdentityDescription
VATL2_KLULA2.157e-2148.45V-type proton ATPase 16 kDa proteolipid subunit 2 ... [more]
VATL_ASCSU2.817e-2150.53V-type proton ATPase 16 kDa proteolipid subunit OS... [more]
VATL2_CANGA3.680e-2149.48V-type proton ATPase 16 kDa proteolipid subunit 2 ... [more]
VATL2_CAEEL3.680e-2150.53V-type proton ATPase 16 kDa proteolipid subunit 2/... [more]
VATL2_CAEBR3.680e-2150.53V-type proton ATPase 16 kDa proteolipid subunit 2/... [more]
VATL_SHEEP8.198e-2145.08V-type proton ATPase 16 kDa proteolipid subunit OS... [more]
VATL2_YEAST8.198e-2148.45V-type proton ATPase subunit c' OS=Saccharomyces c... [more]
VATL_HUMAN1.071e-2045.08V-type proton ATPase 16 kDa proteolipid subunit OS... [more]
VATL_BOVIN1.826e-2044.26V-type proton ATPase 16 kDa proteolipid subunit OS... [more]
VATL2_ASHGO1.826e-2047.42V-type proton ATPase 16 kDa proteolipid subunit 2 ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0001P09_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001P09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN182105 ID=CN182105; Name=CN182105; organism=Citrus sinensis; type=EST; length=518bp
GAGGCATCTTCGCGCATTTCCACATCTCTCACGAGAGACAAAGTAATCAA
AGCTAATCGGGAGCAGAATTCTGTGCTATCCGGGAATTACTTAAAACTTG
CGATTACGACTACTCAGATCTTCGTAGCAAACAGGCAAAATCATCATCGC
CATGTCATCGACTTTCTCCGGCGACGAAACTGCTCCCTTCTTCGGCTTCC
TTGGAGCAGCGGCCGCTCTCGTCTTCTCCTGTATGGGTGCTGCCTATGGG
ACAGCAAAGAGTGGGGTTGGAGTGGCTTCAATGGGTGTCATGAGGCCGGA
GCTTGTTATGAAATCGATTGTTCCAGTGGTTATGGCTGGAGTTTTGGGTA
TTTATGGGTTGATTATTGCTGTTATTATTAGTACTGGGATCAACCCTAAA
GCTAAGTCTTATTATTTGTTTGATGGGTATGCACATTTGTCTTCGGGGCT
TGCTTGTGGGCTTGCTGGACTCTCTGCTGGGATGGCTATTGGAATTGTTG
GTGATGCGGGAGTTAGGG
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