CN182105

Overview
NameCN182105
Unique NameCN182105
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length518
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN182105 vs. ExPASy Swiss-Prot
Match: VATL2_DEBHA (V-type proton ATPase 16 kDa proteolipid subunit 2 OS=Debaryomyces hansenii GN=VMA11 PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 2.385e-20
Identity = 45/97 (46.39%), Postives = 68/97 (70.10%), Query Frame = 2
Query:  227 SCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYXXXXXXXXXXXXXXXXXMAIGIVGDAGVR 517
            SC GAA GTAKSG+G++ +G  +PEL+MKS++PVVM+G+L +YGL+++V+I+ G++P  ++Y LF+G+                  +IGIVGD GVR
Sbjct:   29 SCAGAAIGTAKSGIGISGIGTFKPELIMKSLIPVVMSGILSVYGLVVSVLIAGGLSP-TENYSLFNGFMHLACGLSVGFACLASGYSIGIVGDEGVR 124          
BLAST of CN182105 vs. ExPASy Swiss-Prot
Match: VATL_TORMA (V-type proton ATPase 16 kDa proteolipid subunit OS=Torpedo marmorata PE=1 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 3.115e-20
Identity = 51/97 (52.58%), Postives = 64/97 (65.98%), Query Frame = 2
Query:  227 SCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYXXXXXXXXXXXXXXXXXMAIGIVGDAGVR 517
            S +GAAYGTAKSG G+A+M VMRPEL+MKSI+PVVMAG++ IYGL++AV+I+   N   +   LF  +                  AIGIVGDAGVR
Sbjct:   25 SALGAAYGTAKSGTGIAAMSVMRPELIMKSIIPVVMAGIIAIYGLVVAVLIA---NSLTEDISLFKSFLQLGAGLSVGLSGLAAGFAIGIVGDAGVR 118          
BLAST of CN182105 vs. ExPASy Swiss-Prot
Match: VATL_RAT (V-type proton ATPase 16 kDa proteolipid subunit OS=Rattus norvegicus GN=Atp6v0c PE=2 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 6.940e-20
Identity = 51/97 (52.58%), Postives = 63/97 (64.95%), Query Frame = 2
Query:  227 SCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYXXXXXXXXXXXXXXXXXMAIGIVGDAGVR 517
            S MGAAYGTAKSG G+A+M VMRPEL+MKSI+PVVMAG++ IYGL++AV+I+   N       L+  +                  AIGIVGDAGVR
Sbjct:   26 SAMGAAYGTAKSGTGIAAMSVMRPELIMKSIIPVVMAGIIAIYGLVVAVLIA---NSLTDGITLYRSFLQLGAGLSVGLSGLAAGFAIGIVGDAGVR 119          
BLAST of CN182105 vs. ExPASy Swiss-Prot
Match: VATL_MOUSE (V-type proton ATPase 16 kDa proteolipid subunit OS=Mus musculus GN=Atp6v0c PE=2 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 6.940e-20
Identity = 51/97 (52.58%), Postives = 63/97 (64.95%), Query Frame = 2
Query:  227 SCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYXXXXXXXXXXXXXXXXXMAIGIVGDAGVR 517
            S MGAAYGTAKSG G+A+M VMRPEL+MKSI+PVVMAG++ IYGL++AV+I+   N       L+  +                  AIGIVGDAGVR
Sbjct:   26 SAMGAAYGTAKSGTGIAAMSVMRPELIMKSIIPVVMAGIIAIYGLVVAVLIA---NSLTDGITLYRSFLQLGAGLSVGLSGLAAGFAIGIVGDAGVR 119          
BLAST of CN182105 vs. ExPASy Swiss-Prot
Match: VATL_DICDI (V-type proton ATPase proteolipid subunit OS=Dictyostelium discoideum GN=vatP PE=2 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 2.019e-19
Identity = 49/95 (51.58%), Postives = 64/95 (67.37%), Query Frame = 2
Query:  233 MGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYXXXXXXXXXXXXXXXXXMAIGIVGDAGVR 517
            MGAAYGTAK+ VG+++MGVM+P+LV+K+ +PV+ AGV+ IYGLII VI+  GI P A +Y L   +                 MAIGIVGD+GVR
Sbjct:   45 MGAAYGTAKASVGISNMGVMKPDLVIKAFIPVIFAGVIAIYGLIICVILVGGIKPNA-NYTLMKSFTDLGAGLTVGLCGLAAGMAIGIVGDSGVR 138          
BLAST of CN182105 vs. ExPASy Swiss-Prot
Match: VATL1_CAEEL (V-type proton ATPase 16 kDa proteolipid subunit 1 OS=Caenorhabditis elegans GN=vha-1 PE=2 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 2.637e-19
Identity = 46/94 (48.94%), Postives = 62/94 (65.96%), Query Frame = 2
Query:  236 GAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYXXXXXXXXXXXXXXXXXMAIGIVGDAGVR 517
            G+AYGTAK+G G+ASM V RP+LVMK+I+PVVMAG++ IYGL++AVI+S  + P   +Y + + +                  AIGI GDAGVR
Sbjct:   40 GSAYGTAKAGTGIASMAVARPDLVMKAIIPVVMAGIVAIYGLVVAVIVSGKVEPAGANYTINNAFSQFAGGLVCGLCGLGAGYAIGIAGDAGVR 133          
BLAST of CN182105 vs. ExPASy Swiss-Prot
Match: VATL2_SCHPO (V-type proton ATPase 16 kDa proteolipid subunit 2 OS=Schizosaccharomyces pombe GN=vma11 PE=2 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 1.309e-18
Identity = 43/97 (44.33%), Postives = 65/97 (67.01%), Query Frame = 2
Query:  227 SCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYXXXXXXXXXXXXXXXXXMAIGIVGDAGVR 517
            SC+GA YGTA +G G+A++G  RPE+VMKS++PVVM+G++G+YGL+++V+I+  ++P    Y LF G+                  AIG+VGD GV+
Sbjct:   25 SCLGAGYGTALAGRGIAAVGAFRPEIVMKSLIPVVMSGIIGVYGLVMSVLIAGDMSPD-NDYSLFSGFIHLSAGLAVGLTGVAAGYAIGVVGDRGVQ 120          
BLAST of CN182105 vs. ExPASy Swiss-Prot
Match: VATL_CANTR (V-type proton ATPase 16 kDa proteolipid subunit OS=Candida tropicalis GN=VMA3 PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 3.808e-18
Identity = 44/97 (45.36%), Postives = 64/97 (65.98%), Query Frame = 2
Query:  227 SCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYXXXXXXXXXXXXXXXXXMAIGIVGDAGVR 517
            +C GA+YGTAKSGVG+ +  V RP+L++K++VPVVMAG++ IYGL+++V++S  ++ K     L+ G+                  AIGIVGDAGVR
Sbjct:   24 TCFGASYGTAKSGVGICATSVTRPDLLVKNVVPVVMAGIIAIYGLVVSVLVSDSLSQKQA---LYTGFIQLGAGLSVGLSGLAAGFAIGIVGDAGVR 117          
BLAST of CN182105 vs. ExPASy Swiss-Prot
Match: VATL_MAIZE (V-type proton ATPase 16 kDa proteolipid subunit (Fragment) OS=Zea mays PE=2 SV=2)

HSP 1 Score: 90.1225 bits (222), Expect = 6.495e-18
Identity = 48/66 (72.73%), Postives = 48/66 (72.73%), Query Frame = 2
Query:  320 VPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYXXXXXXXXXXXXXXXXXMAIGIVGDAGVR 517
            VPVVMAGVLGIYGLIIAVIISTGINPKAK YYLFDGY                 MAIGIVGDAGVR
Sbjct:    1 VPVVMAGVLGIYGLIIAVIISTGINPKAKPYYLFDGYAHLSSGLACGLAGLAAGMAIGIVGDAGVR 66          
BLAST of CN182105 vs. ExPASy Swiss-Prot
Match: VATL_SCHPO (V-type proton ATPase 16 kDa proteolipid subunit OS=Schizosaccharomyces pombe GN=vma3 PE=2 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 8.483e-18
Identity = 44/94 (46.81%), Postives = 64/94 (68.09%), Query Frame = 2
Query:  236 GAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYXXXXXXXXXXXXXXXXXMAIGIVGDAGVR 517
            GAAYGTAK+GVG+++MGV+RP+L++K+ +PVVMAG++ IYGL+++V+IS  +    +   L+ G+                  AIGIVGDAGVR
Sbjct:   28 GAAYGTAKAGVGISAMGVLRPDLIVKNTIPVVMAGIIAIYGLVVSVLISGNLK---QILSLYSGFIQLGAGLSVGLAGLAAGFAIGIVGDAGVR 118          
The following BLAST results are available for this feature:
BLAST of CN182105 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 44
Match NameE-valueIdentityDescription
VATL2_DEBHA2.385e-2046.39V-type proton ATPase 16 kDa proteolipid subunit 2 ... [more]
VATL_TORMA3.115e-2052.58V-type proton ATPase 16 kDa proteolipid subunit OS... [more]
VATL_RAT6.940e-2052.58V-type proton ATPase 16 kDa proteolipid subunit OS... [more]
VATL_MOUSE6.940e-2052.58V-type proton ATPase 16 kDa proteolipid subunit OS... [more]
VATL_DICDI2.019e-1951.58V-type proton ATPase proteolipid subunit OS=Dictyo... [more]
VATL1_CAEEL2.637e-1948.94V-type proton ATPase 16 kDa proteolipid subunit 1 ... [more]
VATL2_SCHPO1.309e-1844.33V-type proton ATPase 16 kDa proteolipid subunit 2 ... [more]
VATL_CANTR3.808e-1845.36V-type proton ATPase 16 kDa proteolipid subunit OS... [more]
VATL_MAIZE6.495e-1872.73V-type proton ATPase 16 kDa proteolipid subunit (F... [more]
VATL_SCHPO8.483e-1846.81V-type proton ATPase 16 kDa proteolipid subunit OS... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0001P09_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001P09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN182105 ID=CN182105; Name=CN182105; organism=Citrus sinensis; type=EST; length=518bp
GAGGCATCTTCGCGCATTTCCACATCTCTCACGAGAGACAAAGTAATCAA
AGCTAATCGGGAGCAGAATTCTGTGCTATCCGGGAATTACTTAAAACTTG
CGATTACGACTACTCAGATCTTCGTAGCAAACAGGCAAAATCATCATCGC
CATGTCATCGACTTTCTCCGGCGACGAAACTGCTCCCTTCTTCGGCTTCC
TTGGAGCAGCGGCCGCTCTCGTCTTCTCCTGTATGGGTGCTGCCTATGGG
ACAGCAAAGAGTGGGGTTGGAGTGGCTTCAATGGGTGTCATGAGGCCGGA
GCTTGTTATGAAATCGATTGTTCCAGTGGTTATGGCTGGAGTTTTGGGTA
TTTATGGGTTGATTATTGCTGTTATTATTAGTACTGGGATCAACCCTAAA
GCTAAGTCTTATTATTTGTTTGATGGGTATGCACATTTGTCTTCGGGGCT
TGCTTGTGGGCTTGCTGGACTCTCTGCTGGGATGGCTATTGGAATTGTTG
GTGATGCGGGAGTTAGGG
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