CN182105

Overview
NameCN182105
Unique NameCN182105
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length518
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN182105 vs. ExPASy Swiss-Prot
Match: VATL2_NEUCR (V-type proton ATPase 16 kDa proteolipid subunit 2 OS=Neurospora crassa GN=vma-11 PE=2 SV=2)

HSP 1 Score: 89.7373 bits (221), Expect = 8.483e-18
Identity = 42/96 (43.75%), Postives = 61/96 (63.54%), Query Frame = 2
Query:  236 GAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINP--KAKSYYLFDGYXXXXXXXXXXXXXXXXXMAIGIVGDAGVR 517
            GAAYGTAKSG+G+A +G  RP+L+MK ++PVVM+G++ +Y L++AV+I+  + P    + Y LF+G+                   IGIVGD GVR
Sbjct:   33 GAAYGTAKSGIGIAGVGTFRPDLIMKCLIPVVMSGIIAVYALVVAVLIAQDLGPPGSGQHYSLFNGFMHLACGLSVGLTGLAAGYCIGIVGDKGVR 128          
BLAST of CN182105 vs. ExPASy Swiss-Prot
Match: VATL1_YEAST (V-type proton ATPase subunit c OS=Saccharomyces cerevisiae GN=VMA3 PE=1 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 1.225e-16
Identity = 43/95 (45.26%), Postives = 61/95 (64.21%), Query Frame = 2
Query:  233 MGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYXXXXXXXXXXXXXXXXXMAIGIVGDAGVR 517
            +GAAYGTAKSGVG+ +  V+RP+L+ K+IVPV+MAG++ IYGL+++V++   +  K     L+ G+                  AIGIVGDAGVR
Sbjct:   26 LGAAYGTAKSGVGICATCVLRPDLLFKNIVPVIMAGIIAIYGLVVSVLVCYSLGQKQA---LYTGFIQLGAGLSVGLSGLAAGFAIGIVGDAGVR 117          
BLAST of CN182105 vs. ExPASy Swiss-Prot
Match: VATL_ENTDI (V-type proton ATPase 16 kDa proteolipid subunit OS=Entamoeba dispar GN=VMA3 PE=2 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 1.354e-15
Identity = 42/94 (44.68%), Postives = 57/94 (60.64%), Query Frame = 2
Query:  236 GAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYXXXXXXXXXXXXXXXXXMAIGIVGDAGVR 517
            G AYGTAKS VG++S+GVM+PE +M+S+ PVV AGV+G+YGLI+ +++   IN     Y L   +                 M+IGI GD GVR
Sbjct:   34 GGAYGTAKSSVGISSVGVMKPEFIMRSLFPVVFAGVIGLYGLIVCIVLF--INVNKSEYSLNRAFLDLGAGLTCGLCGLASGMSIGISGDCGVR 125          
BLAST of CN182105 vs. ExPASy Swiss-Prot
Match: VATL_ENTHI (V-type proton ATPase 16 kDa proteolipid subunit OS=Entamoeba histolytica GN=VMA3 PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 2.310e-15
Identity = 41/94 (43.62%), Postives = 57/94 (60.64%), Query Frame = 2
Query:  236 GAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYXXXXXXXXXXXXXXXXXMAIGIVGDAGVR 517
            G AYGTAKS VG++S+GVM+PE +++S+ PVV AG++G+YGLI+ +++   IN     Y L   +                 MAIGI GD GVR
Sbjct:   36 GGAYGTAKSSVGISSVGVMKPEFIVRSVAPVVFAGIIGLYGLIVCILLF--INVTKSEYSLNRAFLDLGAGLTCGLCGLASGMAIGISGDCGVR 127          
The following BLAST results are available for this feature:
BLAST of CN182105 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 44
Match NameE-valueIdentityDescription
VATL2_NEUCR8.483e-1843.75V-type proton ATPase 16 kDa proteolipid subunit 2 ... [more]
VATL1_YEAST1.225e-1645.26V-type proton ATPase subunit c OS=Saccharomyces ce... [more]
VATL_ENTDI1.354e-1544.68V-type proton ATPase 16 kDa proteolipid subunit OS... [more]
VATL_ENTHI2.310e-1543.62V-type proton ATPase 16 kDa proteolipid subunit OS... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0001P09_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001P09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN182105 ID=CN182105; Name=CN182105; organism=Citrus sinensis; type=EST; length=518bp
GAGGCATCTTCGCGCATTTCCACATCTCTCACGAGAGACAAAGTAATCAA
AGCTAATCGGGAGCAGAATTCTGTGCTATCCGGGAATTACTTAAAACTTG
CGATTACGACTACTCAGATCTTCGTAGCAAACAGGCAAAATCATCATCGC
CATGTCATCGACTTTCTCCGGCGACGAAACTGCTCCCTTCTTCGGCTTCC
TTGGAGCAGCGGCCGCTCTCGTCTTCTCCTGTATGGGTGCTGCCTATGGG
ACAGCAAAGAGTGGGGTTGGAGTGGCTTCAATGGGTGTCATGAGGCCGGA
GCTTGTTATGAAATCGATTGTTCCAGTGGTTATGGCTGGAGTTTTGGGTA
TTTATGGGTTGATTATTGCTGTTATTATTAGTACTGGGATCAACCCTAAA
GCTAAGTCTTATTATTTGTTTGATGGGTATGCACATTTGTCTTCGGGGCT
TGCTTGTGGGCTTGCTGGACTCTCTGCTGGGATGGCTATTGGAATTGTTG
GTGATGCGGGAGTTAGGG
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