CN188884
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_FERNB (50S ribosomal protein L1 OS=Fervidobacterium nodosum (strain ATCC 35602 / DSM 5306 / Rt17-B1) GN=rplA PE=3 SV=1) HSP 1 Score: 144.821 bits (364), Expect = 4.871e-34 Identity = 72/143 (50.35%), Postives = 97/143 (67.83%), Query Frame = -1 Query: 340 ADLVGGDDLIEQIKG-GFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEMLDYK 765 AD VG ++L ++I GF++FD IA+PDMM + LGK+LGPRGLMPNPK GTVT +I A+ EFKKGKVE R DKTG +H P GKA F D L N +A + I + +P G KG + K A + ++MGP I+L++ + + K Sbjct: 92 ADYVGAEELADKIANEGFVDFDVAIATPDMMKVIGKLGKVLGPRGLMPNPKTGTVTEDIAAAVSEFKKGKVEVRTDKTGNLHFPVGKASFEPDKLKENIKSAYEQILSLRPAGVKGHFIKKAVVATTMGPGIKLDLNVLAEGK 234
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_CLOPS (50S ribosomal protein L1 OS=Clostridium perfringens (strain SM101 / Type A) GN=rplA PE=3 SV=1) HSP 1 Score: 144.821 bits (364), Expect = 4.871e-34 Identity = 69/141 (48.94%), Postives = 99/141 (70.21%), Query Frame = -1 Query: 346 ADLVGGDDLIEQIKG-GFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEMLD 765 AD VG D+L+++I+G + ++D ++A+PDMM V LG++LGP+GLMPNPK+GTVT ++ AI+E K GKVEYR DKT IVH P GK F + L+ NF A + ++ KP AKG Y KS + ++MGP ++N ++LD Sbjct: 89 ADFVGADELVQKIQGENWFDYDVVVATPDMMGVVGRLGRVLGPKGLMPNPKSGTVTFDVANAIKEIKAGKVEYRVDKTAIVHCPIGKKSFGTEKLVENFKALMDALVKAKPAAAKGQYLKSVSVSATMGPGAKVNPAKVLD 229
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_CLOPE (50S ribosomal protein L1 OS=Clostridium perfringens GN=rplA PE=3 SV=1) HSP 1 Score: 144.821 bits (364), Expect = 4.871e-34 Identity = 69/141 (48.94%), Postives = 99/141 (70.21%), Query Frame = -1 Query: 346 ADLVGGDDLIEQIKG-GFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEMLD 765 AD VG D+L+++I+G + ++D ++A+PDMM V LG++LGP+GLMPNPK+GTVT ++ AI+E K GKVEYR DKT IVH P GK F + L+ NF A + ++ KP AKG Y KS + ++MGP ++N ++LD Sbjct: 89 ADFVGADELVQKIQGENWFDYDVVVATPDMMGVVGRLGRVLGPKGLMPNPKSGTVTFDVANAIKEIKAGKVEYRVDKTAIVHCPIGKKSFGTEKLVENFKALMDALVKAKPAAAKGQYLKSVSVSATMGPGAKVNPAKVLD 229
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_CLOP1 (50S ribosomal protein L1 OS=Clostridium perfringens (strain ATCC 13124 / NCTC 8237 / Type A) GN=rplA PE=3 SV=1) HSP 1 Score: 144.821 bits (364), Expect = 4.871e-34 Identity = 69/141 (48.94%), Postives = 99/141 (70.21%), Query Frame = -1 Query: 346 ADLVGGDDLIEQIKG-GFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEMLD 765 AD VG D+L+++I+G + ++D ++A+PDMM V LG++LGP+GLMPNPK+GTVT ++ AI+E K GKVEYR DKT IVH P GK F + L+ NF A + ++ KP AKG Y KS + ++MGP ++N ++LD Sbjct: 89 ADFVGADELVQKIQGENWFDYDVVVATPDMMGVVGRLGRVLGPKGLMPNPKSGTVTFDVANAIKEIKAGKVEYRVDKTAIVHCPIGKKSFGTEKLVENFKALMDALVKAKPAAAKGQYLKSVSVSATMGPGAKVNPAKVLD 229
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_CLOB8 (50S ribosomal protein L1 OS=Clostridium beijerinckii (strain ATCC 51743 / NCIMB 8052) GN=rplA PE=3 SV=1) HSP 1 Score: 144.821 bits (364), Expect = 4.871e-34 Identity = 70/141 (49.65%), Postives = 98/141 (69.50%), Query Frame = -1 Query: 346 ADLVGGDDLIEQIKG-GFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEMLD 765 AD VG D+L+++I+ + ++D ++A+PDMM V +G++LGP+GLMPNPK+GTVT ++ +AIEE K GKVEYR DKT IVH P GK F + L NF A ++++ KP AKG Y KS + S+MGPS ++N LD Sbjct: 89 ADFVGADELVQKIQSENWFDYDVVVATPDMMGIVGRIGRVLGPKGLMPNPKSGTVTFDVAKAIEEIKAGKVEYRVDKTAIVHCPIGKKSFGTEKLKENFTALMEALVKAKPAAAKGQYLKSVSVSSTMGPSAKVNPTRALD 229
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_CAMJR (50S ribosomal protein L1 OS=Campylobacter jejuni (strain RM1221) GN=rplA PE=3 SV=1) HSP 1 Score: 144.821 bits (364), Expect = 4.871e-34 Identity = 70/142 (49.30%), Postives = 97/142 (68.31%), Query Frame = -1 Query: 340 ADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEMLDYK 765 AD+VG DDL+E+I+ G M FD LIA+P++M V +G+ILGP+GLMPNPK GTVT ++ QA+ K G+V +R DK G +H GK FS++ L N VK+I +KP AKG Y K+A + +M PS++L +E+LD K Sbjct: 92 ADIVGSDDLVEEIQKGNMNFDVLIATPNLMGLVGKVGRILGPKGLMPNPKTGTVTMDVAQAVNNAKSGQVNFRVDKQGNIHAGLGKVSFSKEQLWDNVSTFVKAINKHKPAAAKGRYIKNAALSLTMSPSVKLETQELLDMK 233
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_CAMJJ (50S ribosomal protein L1 OS=Campylobacter jejuni subsp. jejuni serotype O:23/36 (strain 81-176) GN=rplA PE=3 SV=1) HSP 1 Score: 144.821 bits (364), Expect = 4.871e-34 Identity = 70/142 (49.30%), Postives = 97/142 (68.31%), Query Frame = -1 Query: 340 ADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEMLDYK 765 AD+VG DDL+E+I+ G M FD LIA+P++M V +G+ILGP+GLMPNPK GTVT ++ QA+ K G+V +R DK G +H GK FS++ L N VK+I +KP AKG Y K+A + +M PS++L +E+LD K Sbjct: 92 ADIVGSDDLVEEIQKGNMNFDVLIATPNLMGLVGKVGRILGPKGLMPNPKTGTVTMDVAQAVNNAKSGQVNFRVDKQGNIHAGLGKVSFSKEQLWDNVSTFVKAINKHKPAAAKGRYIKNAALSLTMSPSVKLETQELLDMK 233
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_CAMJE (50S ribosomal protein L1 OS=Campylobacter jejuni GN=rplA PE=3 SV=1) HSP 1 Score: 144.821 bits (364), Expect = 4.871e-34 Identity = 70/142 (49.30%), Postives = 97/142 (68.31%), Query Frame = -1 Query: 340 ADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEMLDYK 765 AD+VG DDL+E+I+ G M FD LIA+P++M V +G+ILGP+GLMPNPK GTVT ++ QA+ K G+V +R DK G +H GK FS++ L N VK+I +KP AKG Y K+A + +M PS++L +E+LD K Sbjct: 92 ADIVGSDDLVEEIQKGNMNFDVLIATPNLMGLVGKVGRILGPKGLMPNPKTGTVTMDVAQAVNNAKSGQVNFRVDKQGNIHAGLGKVSFSKEQLWDNVSTFVKAINKHKPAAAKGRYIKNAALSLTMSPSVKLETQELLDMK 233
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_CAMJD (50S ribosomal protein L1 OS=Campylobacter jejuni subsp. doylei (strain ATCC BAA-1458 / RM4099 / 269.97) GN=rplA PE=3 SV=1) HSP 1 Score: 144.821 bits (364), Expect = 4.871e-34 Identity = 70/142 (49.30%), Postives = 97/142 (68.31%), Query Frame = -1 Query: 340 ADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEMLDYK 765 AD+VG DDL+E+I+ G M FD LIA+P++M V +G+ILGP+GLMPNPK GTVT ++ QA+ K G+V +R DK G +H GK FS++ L N VK+I +KP AKG Y K+A + +M PS++L +E+LD K Sbjct: 92 ADIVGSDDLVEEIQKGNMNFDVLIATPNLMGLVGKVGRILGPKGLMPNPKTGTVTMDVAQAVNNAKSGQVNFRVDKQGNIHAGLGKVSFSKEQLWDNVSTFVKAINKHKPAAAKGRYIKNAALSLTMSPSVKLETQELLDMK 233
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_CAMJ8 (50S ribosomal protein L1 OS=Campylobacter jejuni subsp. jejuni serotype O:6 (strain 81116 / NCTC 11828) GN=rplA PE=3 SV=1) HSP 1 Score: 144.821 bits (364), Expect = 4.871e-34 Identity = 70/142 (49.30%), Postives = 97/142 (68.31%), Query Frame = -1 Query: 340 ADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEMLDYK 765 AD+VG DDL+E+I+ G M FD LIA+P++M V +G+ILGP+GLMPNPK GTVT ++ QA+ K G+V +R DK G +H GK FS++ L N VK+I +KP AKG Y K+A + +M PS++L +E+LD K Sbjct: 92 ADIVGSDDLVEEIQKGNMNFDVLIATPNLMGLVGKVGRILGPKGLMPNPKTGTVTMDVAQAVNNAKSGQVNFRVDKQGNIHAGLGKVSFSKEQLWDNVSTFVKAINKHKPAAAKGRYIKNAALSLTMSPSVKLETQELLDMK 233 The following BLAST results are available for this feature:
BLAST of CN188884 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >CN188884 ID=CN188884; Name=CN188884; organism=Citrus sinensis; type=EST; length=765bpback to top |