CN188884

Overview
NameCN188884
Unique NameCN188884
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length765
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_FERNB (50S ribosomal protein L1 OS=Fervidobacterium nodosum (strain ATCC 35602 / DSM 5306 / Rt17-B1) GN=rplA PE=3 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 4.871e-34
Identity = 72/143 (50.35%), Postives = 97/143 (67.83%), Query Frame = -1
Query:  340 ADLVGGDDLIEQIKG-GFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEMLDYK 765
            AD VG ++L ++I   GF++FD  IA+PDMM  +  LGK+LGPRGLMPNPK GTVT +I  A+ EFKKGKVE R DKTG +H P GKA F  D L  N  +A + I + +P G KG + K A + ++MGP I+L++  + + K
Sbjct:   92 ADYVGAEELADKIANEGFVDFDVAIATPDMMKVIGKLGKVLGPRGLMPNPKTGTVTEDIAAAVSEFKKGKVEVRTDKTGNLHFPVGKASFEPDKLKENIKSAYEQILSLRPAGVKGHFIKKAVVATTMGPGIKLDLNVLAEGK 234          
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_CLOPS (50S ribosomal protein L1 OS=Clostridium perfringens (strain SM101 / Type A) GN=rplA PE=3 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 4.871e-34
Identity = 69/141 (48.94%), Postives = 99/141 (70.21%), Query Frame = -1
Query:  346 ADLVGGDDLIEQIKG-GFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEMLD 765
            AD VG D+L+++I+G  + ++D ++A+PDMM  V  LG++LGP+GLMPNPK+GTVT ++  AI+E K GKVEYR DKT IVH P GK  F  + L+ NF A + ++   KP  AKG Y KS  + ++MGP  ++N  ++LD
Sbjct:   89 ADFVGADELVQKIQGENWFDYDVVVATPDMMGVVGRLGRVLGPKGLMPNPKSGTVTFDVANAIKEIKAGKVEYRVDKTAIVHCPIGKKSFGTEKLVENFKALMDALVKAKPAAAKGQYLKSVSVSATMGPGAKVNPAKVLD 229          
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_CLOPE (50S ribosomal protein L1 OS=Clostridium perfringens GN=rplA PE=3 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 4.871e-34
Identity = 69/141 (48.94%), Postives = 99/141 (70.21%), Query Frame = -1
Query:  346 ADLVGGDDLIEQIKG-GFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEMLD 765
            AD VG D+L+++I+G  + ++D ++A+PDMM  V  LG++LGP+GLMPNPK+GTVT ++  AI+E K GKVEYR DKT IVH P GK  F  + L+ NF A + ++   KP  AKG Y KS  + ++MGP  ++N  ++LD
Sbjct:   89 ADFVGADELVQKIQGENWFDYDVVVATPDMMGVVGRLGRVLGPKGLMPNPKSGTVTFDVANAIKEIKAGKVEYRVDKTAIVHCPIGKKSFGTEKLVENFKALMDALVKAKPAAAKGQYLKSVSVSATMGPGAKVNPAKVLD 229          
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_CLOP1 (50S ribosomal protein L1 OS=Clostridium perfringens (strain ATCC 13124 / NCTC 8237 / Type A) GN=rplA PE=3 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 4.871e-34
Identity = 69/141 (48.94%), Postives = 99/141 (70.21%), Query Frame = -1
Query:  346 ADLVGGDDLIEQIKG-GFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEMLD 765
            AD VG D+L+++I+G  + ++D ++A+PDMM  V  LG++LGP+GLMPNPK+GTVT ++  AI+E K GKVEYR DKT IVH P GK  F  + L+ NF A + ++   KP  AKG Y KS  + ++MGP  ++N  ++LD
Sbjct:   89 ADFVGADELVQKIQGENWFDYDVVVATPDMMGVVGRLGRVLGPKGLMPNPKSGTVTFDVANAIKEIKAGKVEYRVDKTAIVHCPIGKKSFGTEKLVENFKALMDALVKAKPAAAKGQYLKSVSVSATMGPGAKVNPAKVLD 229          
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_CLOB8 (50S ribosomal protein L1 OS=Clostridium beijerinckii (strain ATCC 51743 / NCIMB 8052) GN=rplA PE=3 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 4.871e-34
Identity = 70/141 (49.65%), Postives = 98/141 (69.50%), Query Frame = -1
Query:  346 ADLVGGDDLIEQIKG-GFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEMLD 765
            AD VG D+L+++I+   + ++D ++A+PDMM  V  +G++LGP+GLMPNPK+GTVT ++ +AIEE K GKVEYR DKT IVH P GK  F  + L  NF A ++++   KP  AKG Y KS  + S+MGPS ++N    LD
Sbjct:   89 ADFVGADELVQKIQSENWFDYDVVVATPDMMGIVGRIGRVLGPKGLMPNPKSGTVTFDVAKAIEEIKAGKVEYRVDKTAIVHCPIGKKSFGTEKLKENFTALMEALVKAKPAAAKGQYLKSVSVSSTMGPSAKVNPTRALD 229          
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_CAMJR (50S ribosomal protein L1 OS=Campylobacter jejuni (strain RM1221) GN=rplA PE=3 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 4.871e-34
Identity = 70/142 (49.30%), Postives = 97/142 (68.31%), Query Frame = -1
Query:  340 ADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEMLDYK 765
            AD+VG DDL+E+I+ G M FD LIA+P++M  V  +G+ILGP+GLMPNPK GTVT ++ QA+   K G+V +R DK G +H   GK  FS++ L  N    VK+I  +KP  AKG Y K+A +  +M PS++L  +E+LD K
Sbjct:   92 ADIVGSDDLVEEIQKGNMNFDVLIATPNLMGLVGKVGRILGPKGLMPNPKTGTVTMDVAQAVNNAKSGQVNFRVDKQGNIHAGLGKVSFSKEQLWDNVSTFVKAINKHKPAAAKGRYIKNAALSLTMSPSVKLETQELLDMK 233          
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_CAMJJ (50S ribosomal protein L1 OS=Campylobacter jejuni subsp. jejuni serotype O:23/36 (strain 81-176) GN=rplA PE=3 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 4.871e-34
Identity = 70/142 (49.30%), Postives = 97/142 (68.31%), Query Frame = -1
Query:  340 ADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEMLDYK 765
            AD+VG DDL+E+I+ G M FD LIA+P++M  V  +G+ILGP+GLMPNPK GTVT ++ QA+   K G+V +R DK G +H   GK  FS++ L  N    VK+I  +KP  AKG Y K+A +  +M PS++L  +E+LD K
Sbjct:   92 ADIVGSDDLVEEIQKGNMNFDVLIATPNLMGLVGKVGRILGPKGLMPNPKTGTVTMDVAQAVNNAKSGQVNFRVDKQGNIHAGLGKVSFSKEQLWDNVSTFVKAINKHKPAAAKGRYIKNAALSLTMSPSVKLETQELLDMK 233          
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_CAMJE (50S ribosomal protein L1 OS=Campylobacter jejuni GN=rplA PE=3 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 4.871e-34
Identity = 70/142 (49.30%), Postives = 97/142 (68.31%), Query Frame = -1
Query:  340 ADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEMLDYK 765
            AD+VG DDL+E+I+ G M FD LIA+P++M  V  +G+ILGP+GLMPNPK GTVT ++ QA+   K G+V +R DK G +H   GK  FS++ L  N    VK+I  +KP  AKG Y K+A +  +M PS++L  +E+LD K
Sbjct:   92 ADIVGSDDLVEEIQKGNMNFDVLIATPNLMGLVGKVGRILGPKGLMPNPKTGTVTMDVAQAVNNAKSGQVNFRVDKQGNIHAGLGKVSFSKEQLWDNVSTFVKAINKHKPAAAKGRYIKNAALSLTMSPSVKLETQELLDMK 233          
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_CAMJD (50S ribosomal protein L1 OS=Campylobacter jejuni subsp. doylei (strain ATCC BAA-1458 / RM4099 / 269.97) GN=rplA PE=3 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 4.871e-34
Identity = 70/142 (49.30%), Postives = 97/142 (68.31%), Query Frame = -1
Query:  340 ADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEMLDYK 765
            AD+VG DDL+E+I+ G M FD LIA+P++M  V  +G+ILGP+GLMPNPK GTVT ++ QA+   K G+V +R DK G +H   GK  FS++ L  N    VK+I  +KP  AKG Y K+A +  +M PS++L  +E+LD K
Sbjct:   92 ADIVGSDDLVEEIQKGNMNFDVLIATPNLMGLVGKVGRILGPKGLMPNPKTGTVTMDVAQAVNNAKSGQVNFRVDKQGNIHAGLGKVSFSKEQLWDNVSTFVKAINKHKPAAAKGRYIKNAALSLTMSPSVKLETQELLDMK 233          
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_CAMJ8 (50S ribosomal protein L1 OS=Campylobacter jejuni subsp. jejuni serotype O:6 (strain 81116 / NCTC 11828) GN=rplA PE=3 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 4.871e-34
Identity = 70/142 (49.30%), Postives = 97/142 (68.31%), Query Frame = -1
Query:  340 ADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEMLDYK 765
            AD+VG DDL+E+I+ G M FD LIA+P++M  V  +G+ILGP+GLMPNPK GTVT ++ QA+   K G+V +R DK G +H   GK  FS++ L  N    VK+I  +KP  AKG Y K+A +  +M PS++L  +E+LD K
Sbjct:   92 ADIVGSDDLVEEIQKGNMNFDVLIATPNLMGLVGKVGRILGPKGLMPNPKTGTVTMDVAQAVNNAKSGQVNFRVDKQGNIHAGLGKVSFSKEQLWDNVSTFVKAINKHKPAAAKGRYIKNAALSLTMSPSVKLETQELLDMK 233          
The following BLAST results are available for this feature:
BLAST of CN188884 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL1_FERNB4.871e-3450.3550S ribosomal protein L1 OS=Fervidobacterium nodos... [more]
RL1_CLOPS4.871e-3448.9450S ribosomal protein L1 OS=Clostridium perfringen... [more]
RL1_CLOPE4.871e-3448.9450S ribosomal protein L1 OS=Clostridium perfringen... [more]
RL1_CLOP14.871e-3448.9450S ribosomal protein L1 OS=Clostridium perfringen... [more]
RL1_CLOB84.871e-3449.6550S ribosomal protein L1 OS=Clostridium beijerinck... [more]
RL1_CAMJR4.871e-3449.3050S ribosomal protein L1 OS=Campylobacter jejuni (... [more]
RL1_CAMJJ4.871e-3449.3050S ribosomal protein L1 OS=Campylobacter jejuni s... [more]
RL1_CAMJE4.871e-3449.3050S ribosomal protein L1 OS=Campylobacter jejuni G... [more]
RL1_CAMJD4.871e-3449.3050S ribosomal protein L1 OS=Campylobacter jejuni s... [more]
RL1_CAMJ84.871e-3449.3050S ribosomal protein L1 OS=Campylobacter jejuni s... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0006P10_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0006P10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188884 ID=CN188884; Name=CN188884; organism=Citrus sinensis; type=EST; length=765bp
TTTTTTTTTTTTTTTTTACAAGAATGGAAAAATATTCAGTAGCCATTCAA
GTAATTTTACAGAAAAAAAAATTGCGGTAATGAACCTGAGAGTGGGCGAT
AATAATAATATCTTTTTCAGTACGGAAAAAAGCCATGCTGTATGCATTTT
TCCTTTTTTTTATTTGCTACAATCTCATCCACATTGATAATCAAGATCTC
CTCACCTCACCATAATTCACTCTCCTACAACTTTTGCCAAGCAGTGGCAA
GCCCTGGCATGGGTATCAAAGAGGCTGACTGAACAGTTAAAGCTATCATT
TACAAAATTTAGTTATGTCATTTAGAAATTTGATGGAAGCTTGTAATCGA
GCATTTCTTTTATGTTTAATCGAATGGAAGGTCCCATTGATGAGCAAATG
TAAGCACTTTTCCAGTACACTCCTTTGGCCCCTTTTGGCTTGTTTGCTTC
AATTGATTTAACAGCAGCAAGGAAGTTTATGAGGAGGTCATCTTCAGAAA
AATCAGCTTTCCCAAAAGGTATGTGGACAATCCCAGTTTTATCTGCTCTA
TATTCAACTTTTCCCTTCTTGAATTCTTCTATGGCCTGAGGTATGTTAGT
TGTAACAGTACCAGCTTTAGGATTTGGCATGAGTCCCCGTGGTCCAAGAA
TTTTTCCTAGGCTGGCAACCTTAACCATCATATCTGGTGAAGCAATTAGC
TTGTCGAACTCCATGAATCCTCCTTTTATTTGTTCAATCAAGTCATCACC
ACCAACCAAATCTGC
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