CN188884
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RK1_PORYE (50S ribosomal protein L1, chloroplastic OS=Porphyra yezoensis GN=rpl1 PE=3 SV=1) HSP 1 Score: 177.563 bits (449), Expect = 6.781e-44 Identity = 78/139 (56.12%), Postives = 113/139 (81.29%), Query Frame = -1 Query: 349 ADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEML 765 AD+ G ++LI++I G ++FDKLIA+PD+M +A LG++LGPRGLMP+PKAGTVT ++ +A+ EFK GKVEYR D+TGI+H+PFGK+ FS++DL++N +SI+ NKP GAKG YWK+ ++ S+MGPSI+++I +L Sbjct: 91 ADVSGSEELIDEILKGRLDFDKLIATPDVMPLIAKLGRVLGPRGLMPSPKAGTVTLDVAKAVNEFKGGKVEYRVDRTGIIHVPFGKSSFSQEDLVLNLQTIKESIDRNKPSGAKGKYWKTFFLSSTMGPSIQIDITSLL 229
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RK1_CYAME (50S ribosomal protein L1, chloroplastic OS=Cyanidioschyzon merolae GN=rpl1 PE=3 SV=1) HSP 1 Score: 177.563 bits (449), Expect = 6.781e-44 Identity = 84/137 (61.31%), Postives = 106/137 (77.37%), Query Frame = -1 Query: 355 ADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKE 765 ADLVG DDL QI + FD LIA+PDMM +A LGKILGPRGLMP+PK+GTVTTN+ +AI+ F++G++EYR DKTGIVH+ FG+ DF+E L N +A +S+E NKP GA G+YWKS I +SM PSIRLNI++ Sbjct: 86 ADLVGSDDLCAQIAQSIINFDCLIATPDMMPTLAKLGKILGPRGLMPSPKSGTVTTNVAEAIQAFRRGQIEYRTDKTGIVHLAFGRMDFNEQHLYDNLVAIKESVETNKPSGASGLYWKSFAIATSMSPSIRLNIQQ 222
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_SYNS3 (50S ribosomal protein L1 OS=Synechococcus sp. (strain CC9311) GN=rplA PE=3 SV=1) HSP 1 Score: 176.407 bits (446), Expect = 1.511e-43 Identity = 84/140 (60.00%), Postives = 108/140 (77.14%), Query Frame = -1 Query: 346 ADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEMLD 765 A+L G +DL+E I G M FD LIA+PDMM KVA LG++LGPRGLMPNPKAGTVTT++ AI+EFK GK+E+RAD+TGIVH+ FGKA F+ + LL N ++I+ NKP GAKG YWKS Y+ S+MGPS+ ++I + D Sbjct: 91 AELSGDEDLVEAISKGEMNFDLLIATPDMMPKVAKLGRVLGPRGLMPNPKAGTVTTDLASAIQEFKAGKLEFRADRTGIVHVRFGKASFTAEALLENLKTLQETIDRNKPSGAKGRYWKSLYVTSTMGPSVEVDIALLQD 230
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RK1_CYACA (50S ribosomal protein L1, chloroplastic OS=Cyanidium caldarium GN=rpl1 PE=3 SV=1) HSP 1 Score: 176.022 bits (445), Expect = 1.973e-43 Identity = 78/137 (56.93%), Postives = 109/137 (79.56%), Query Frame = -1 Query: 352 DLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEM 762 D+VG DL+E I GF+EFD+L+ +PDMM +A +GKILGPRGLMP+PK+G+VT++I AI+EFKKGK+EYR DK+GIVH GK DF+ +DLL N +A KSI+ N+P GAKG YWK+ Y+C++M P+I+++ ++ Sbjct: 94 DIVGSKDLVESIANGFLEFDQLLTTPDMMPVIAKVGKILGPRGLMPSPKSGSVTSDIYNAIQEFKKGKLEYRTDKSGIVHSIIGKIDFTAEDLLNNLIAIKKSIDQNRPNGAKGKYWKNMYLCTTMSPAIKIDFNKL 230
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_SYNPX (50S ribosomal protein L1 OS=Synechococcus sp. (strain WH8102) GN=rplA PE=3 SV=1) HSP 1 Score: 175.252 bits (443), Expect = 3.365e-43 Identity = 83/140 (59.29%), Postives = 107/140 (76.43%), Query Frame = -1 Query: 346 ADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEMLD 765 A+L G +DL+E I G MEFD LIA+PDMM KVA LG++LGPRGLMPNPKAGTVT ++ AI+EFK GK+E+RAD+TGIVH+ FGKA F+ + LL N ++I+ NKP GAKG YWKS Y+ S+MGPS+ ++ + D Sbjct: 91 AELAGDEDLVETIAKGEMEFDLLIATPDMMPKVAKLGRVLGPRGLMPNPKAGTVTIDLAGAIQEFKAGKLEFRADRTGIVHVRFGKASFTAEALLQNLKTLQETIDRNKPSGAKGRYWKSLYVTSTMGPSVEVDFSALQD 230
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RK1_PORPU (50S ribosomal protein L1, chloroplastic OS=Porphyra purpurea GN=rpl1 PE=3 SV=1) HSP 1 Score: 175.252 bits (443), Expect = 3.365e-43 Identity = 78/139 (56.12%), Postives = 111/139 (79.86%), Query Frame = -1 Query: 349 ADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEML 765 AD+ G ++LI++I G ++FDKLIA+PD+M +A LG++LGPRGLMP+PKAGTVT +I ++I EFK GKVEYR D+TGI+H+PFGK+ F E+DL++N SI+ NKP G+KG YWK+ ++ S+MGPSI+++I +L Sbjct: 91 ADISGSEELIDEISKGRLDFDKLIATPDIMPLIAKLGRVLGPRGLMPSPKAGTVTLDITKSINEFKGGKVEYRVDRTGIIHVPFGKSSFPEEDLVMNLQTIKDSIDKNKPSGSKGKYWKTFFLSSTMGPSIQIDITSLL 229
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_SYNS9 (50S ribosomal protein L1 OS=Synechococcus sp. (strain CC9902) GN=rplA PE=3 SV=1) HSP 1 Score: 174.866 bits (442), Expect = 4.395e-43 Identity = 82/138 (59.42%), Postives = 106/138 (76.81%), Query Frame = -1 Query: 352 ADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEM 765 A+L G +DL+E I G M FD LIA+PDMM KVA LG++LGPRGLMPNPKAGTVTT++ AI++FK GK+E+RAD+TGIVH+ FGKA F+ D LL N ++I+ NKP GAKG YWKS Y+ S+MGPS+ ++ + Sbjct: 91 AELAGDEDLVEAISKGEMNFDLLIATPDMMPKVAKLGRVLGPRGLMPNPKAGTVTTDLAAAIKDFKAGKLEFRADRTGIVHVRFGKASFTADALLENLKTLQETIDRNKPSGAKGRYWKSLYVTSTMGPSVEVDFSAL 228
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_GLOVI (50S ribosomal protein L1 OS=Gloeobacter violaceus GN=rplA PE=3 SV=1) HSP 1 Score: 174.096 bits (440), Expect = 7.497e-43 Identity = 82/143 (57.34%), Postives = 111/143 (77.62%), Query Frame = -1 Query: 337 ADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEMLDYKL 765 AD+ G ++LIE+I+GGFMEFD +IA+PD+M +VA LGK+LGPRGLMP+PK GTVT ++ AI EFK GK+E+RAD+TGIVHIPFGK F+ + L+ N + +I+ KP GAKG YW++ +I S+MGPSI ++I + D KL Sbjct: 92 ADIAGSEELIERIQGGFMEFDLMIATPDIMPQVARLGKLLGPRGLMPSPKGGTVTMDLVGAIREFKAGKLEFRADRTGIVHIPFGKVSFTPEALMDNLKSVQDAIDRAKPSGAKGRYWRTFHIKSTMGPSIEIDINALRDLKL 234
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RK1_THAPS (50S ribosomal protein L1, chloroplastic OS=Thalassiosira pseudonana GN=rpl1 PE=3 SV=1) HSP 1 Score: 174.096 bits (440), Expect = 7.497e-43 Identity = 77/135 (57.04%), Postives = 109/135 (80.74%), Query Frame = -1 Query: 361 ADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNI 765 AD+VG +LI+ I G + FD L+A+PDMM K+A LG++LGP+GLMP+PK+GTV+TN+ + + +FKKGK EY+ADKTG+VH+ FGKA+FS+D L+ N + +SIE N+P G KG Y+KS +IC+SMGPSI+L++ Sbjct: 92 ADIVGSQELIDDISQGNLNFDLLVATPDMMPKLAKLGRVLGPKGLMPSPKSGTVSTNLTETLSDFKKGKFEYKADKTGVVHVNFGKANFSKDQLMENLTSLYQSIEQNRPSGVKGKYFKSLFICTSMGPSIQLDL 226
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RK1_CYAPA (50S ribosomal protein L1, cyanelle OS=Cyanophora paradoxa GN=rpl1 PE=3 SV=1) HSP 1 Score: 174.096 bits (440), Expect = 7.497e-43 Identity = 82/146 (56.16%), Postives = 112/146 (76.71%), Query Frame = -1 Query: 328 ADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEMLDYKLPSN 765 ADLVG ++LI++I+ G ++FD LIA+PDMM +VA LG++LGPRGLMP+PK GTVT ++ QAI +FK GK+E+R D+TGIVH+ FGKA+FSE+ LL N A ++++ N+P G KG YWKS YI S+M PSI ++ + D KL N Sbjct: 91 ADLVGAEELIDEIQNGRLDFDCLIATPDMMPQVAKLGRVLGPRGLMPSPKGGTVTFDLAQAINDFKAGKLEFRNDRTGIVHVLFGKANFSEEALLGNLKAVQEAVDRNRPSGVKGKYWKSIYITSTMSPSIEVDYNLLRDLKLTEN 236 The following BLAST results are available for this feature:
BLAST of CN188884 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >CN188884 ID=CN188884; Name=CN188884; organism=Citrus sinensis; type=EST; length=765bpback to top |