CN188884
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_PROM3 (50S ribosomal protein L1 OS=Prochlorococcus marinus (strain MIT 9303) GN=rplA PE=3 SV=2) HSP 1 Score: 179.874 bits (455), Expect = 1.366e-44 Identity = 86/140 (61.43%), Postives = 108/140 (77.14%), Query Frame = -1 Query: 346 ADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEMLD 765 A+L G DDL+E I G M+FD LIA+PDMM KVA LG++LGPRGLMPNPKAGTVTT++ AI+EFK GK+E+RAD+ GIVH+ FGKA FS D LL N ++I+ NKP GAKG YWKS YI S+MGPS+ +++ + D Sbjct: 91 AELAGDDDLVESIGKGQMDFDLLIATPDMMPKVAKLGRVLGPRGLMPNPKAGTVTTDLAAAIKEFKAGKLEFRADRAGIVHVRFGKASFSADALLENLKTLQETIDRNKPSGAKGRYWKSLYITSTMGPSVEVDVTALQD 230
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_SYNSC (50S ribosomal protein L1 OS=Synechococcus sp. (strain CC9605) GN=rplA PE=3 SV=1) HSP 1 Score: 179.489 bits (454), Expect = 1.784e-44 Identity = 85/140 (60.71%), Postives = 108/140 (77.14%), Query Frame = -1 Query: 346 ADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEMLD 765 A+L G +DL+E I G M+FD LIA+PDMM KVA LG++LGPRGLMPNPKAGTVTT++ AI+EFK GK+E+RAD+TGIVH+ FGKA FS D LL N ++I+ NKP GAKG YWKS Y+ S+MGPS+ ++ + D Sbjct: 91 AELAGEEDLVESISKGEMDFDLLIATPDMMPKVAKLGRVLGPRGLMPNPKAGTVTTDLEAAIKEFKAGKLEFRADRTGIVHVRFGKASFSADALLQNLKTLQETIDRNKPSGAKGRYWKSLYVTSTMGPSVEVDFSALQD 230
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_SYNE7 (50S ribosomal protein L1 OS=Synechococcus elongatus (strain PCC 7942) GN=rplA PE=3 SV=1) HSP 1 Score: 179.489 bits (454), Expect = 1.784e-44 Identity = 84/143 (58.74%), Postives = 112/143 (78.32%), Query Frame = -1 Query: 337 ADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEMLDYKL 765 AD+ G ++LIE+I GF++FD LIA+PD+M +VA LG+ LGPRGLMP+PK GTVT ++ QAI EFK GK+E+RAD+TGIVH+ FGKA FS DDLL N A ++I+ N+P GAKG YW+S YI ++MGP+I ++I + D KL Sbjct: 92 ADIAGSEELIEEISKGFLDFDLLIATPDVMPQVAKLGRQLGPRGLMPSPKGGTVTFDLEQAINEFKAGKLEFRADRTGIVHVLFGKASFSADDLLANLKALQETIDRNRPSGAKGRYWRSVYISATMGPAIEVDINALRDLKL 234
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_SYNY3 (50S ribosomal protein L1 OS=Synechocystis sp. (strain PCC 6803) GN=rplA PE=3 SV=1) HSP 1 Score: 179.104 bits (453), Expect = 2.331e-44 Identity = 83/146 (56.85%), Postives = 111/146 (76.03%), Query Frame = -1 Query: 328 ADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEMLDYKLPSN 765 AD+ G ++LIE+I+ G M+FD LIA+PDMM K+A LGK LGPRGLMP+PK GTVT ++ A+ EFK GK+E+RAD+TGIVH+ FGKA FS DDLL N A ++I+ N+P GAKG +W++ ++ SSMGPSI ++I + D K N Sbjct: 93 ADIAGSEELIEEIQKGMMDFDVLIATPDMMPKIARLGKQLGPRGLMPSPKGGTVTADLAAAVNEFKAGKLEFRADRTGIVHVMFGKASFSADDLLANLKALQETIDRNRPSGAKGRFWRTVFVSSSMGPSIPVDINALRDLKFEDN 238
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_TRIEI (50S ribosomal protein L1 OS=Trichodesmium erythraeum (strain IMS101) GN=rplA PE=3 SV=1) HSP 1 Score: 178.718 bits (452), Expect = 3.044e-44 Identity = 81/143 (56.64%), Postives = 113/143 (79.02%), Query Frame = -1 Query: 337 ADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEMLDYKL 765 ADL G ++LIEQI G MEFD+LIA+PD+M +VA LG++LGPRGLMP+PK GTVT ++ +AI+EFK GK+E+RAD++GIVH+ FGK FS +DLLIN A + I+ N+P GAKG YW++ ++ ++MGPSI +++ + D KL Sbjct: 92 ADLAGSEELIEQISKGMMEFDRLIATPDVMPQVAKLGRLLGPRGLMPSPKGGTVTFDLTKAIDEFKAGKLEFRADRSGIVHVMFGKTSFSVEDLLINLKALQECIDRNRPSGAKGRYWRTIFVSATMGPSIEIDVSSLQDLKL 234
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_SYNP6 (50S ribosomal protein L1 OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=rplA PE=3 SV=1) HSP 1 Score: 178.333 bits (451), Expect = 3.975e-44 Identity = 83/143 (58.04%), Postives = 112/143 (78.32%), Query Frame = -1 Query: 337 ADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEMLDYKL 765 AD+ G ++LIE+I GF++FD LIA+PD+M +VA LG+ LGPRGLMP+PK GTVT ++ QA+ EFK GK+E+RAD+TGIVH+ FGKA FS DDLL N A ++I+ N+P GAKG YW+S YI ++MGP+I ++I + D KL Sbjct: 92 ADIAGSEELIEEISKGFLDFDLLIATPDVMPQVAKLGRQLGPRGLMPSPKGGTVTFDLEQAVNEFKAGKLEFRADRTGIVHVLFGKASFSADDLLANLKALQETIDRNRPSGAKGRYWRSVYISATMGPAIEVDINALRDPKL 234
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_PROMT (50S ribosomal protein L1 OS=Prochlorococcus marinus (strain NATL2A) GN=rplA PE=3 SV=1) HSP 1 Score: 177.948 bits (450), Expect = 5.192e-44 Identity = 85/140 (60.71%), Postives = 108/140 (77.14%), Query Frame = -1 Query: 346 ADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEMLD 765 ADL G +DL++ I G M FD LI++PDMM KVA LG++LGPRGLMPNPKAGTVTT++ AI+EFK GK+E+RADK GIVH+ FGKA FSE+ LL N +IE NKP GAKG +W+S +I S+MGPS+ ++I E+ D Sbjct: 91 ADLAGEEDLVDSINKGEMNFDLLISTPDMMPKVAKLGRVLGPRGLMPNPKAGTVTTDLEGAIKEFKAGKLEFRADKAGIVHVRFGKASFSEEALLENLKTLQTTIEKNKPSGAKGKFWRSFFITSTMGPSVEVDINELQD 230
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_PROM1 (50S ribosomal protein L1 OS=Prochlorococcus marinus (strain NATL1A) GN=rplA PE=3 SV=1) HSP 1 Score: 177.948 bits (450), Expect = 5.192e-44 Identity = 85/140 (60.71%), Postives = 108/140 (77.14%), Query Frame = -1 Query: 346 ADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEMLD 765 ADL G +DL++ I G M FD LI++PDMM KVA LG++LGPRGLMPNPKAGTVTT++ AI+EFK GK+E+RADK GIVH+ FGKA FSE+ LL N +IE NKP GAKG +W+S +I S+MGPS+ ++I E+ D Sbjct: 91 ADLAGEEDLVDSINKGEMNFDLLISTPDMMPKVAKLGRVLGPRGLMPNPKAGTVTTDLEGAIKEFKAGKLEFRADKAGIVHVRFGKASFSEEALLENLKTLQTTIEKNKPSGAKGKFWRSFFITSTMGPSVEVDINELQD 230
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_CYAP8 (50S ribosomal protein L1 OS=Cyanothece sp. (strain PCC 8801) GN=rplA PE=3 SV=1) HSP 1 Score: 177.948 bits (450), Expect = 5.192e-44 Identity = 82/143 (57.34%), Postives = 112/143 (78.32%), Query Frame = -1 Query: 337 ADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEMLDYKL 765 AD+VG ++LIE+I G M+F+ LIA+PDMM KVA LG++LGPRGLMP+PK GTVT ++ AI EFK GK+E+RAD+TGIVH+ FGKA F+ +DLL N A ++++ N+P GAKG YW+S ++ +SMGPSI ++I + D KL Sbjct: 93 ADIVGSEELIEEIFKGMMDFEVLIATPDMMPKVAKLGRLLGPRGLMPSPKGGTVTADLTNAITEFKAGKLEFRADRTGIVHVMFGKASFTPEDLLANLKALQETVDRNRPSGAKGRYWRSVFVSASMGPSIAVDINALRDLKL 235
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_PROMA (50S ribosomal protein L1 OS=Prochlorococcus marinus GN=rplA PE=3 SV=1) HSP 1 Score: 177.563 bits (449), Expect = 6.781e-44 Identity = 85/142 (59.86%), Postives = 109/142 (76.76%), Query Frame = -1 Query: 340 ADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEMLDYK 765 ADL G ++LI+ I G M FD LI++PDMM KVA LG++LGPRGLMPNPKAGTVTT++ +I+EFK GK+E+RAD+ GIVH+ FGKA FS +DLL N ++I+ NKP GAKG YWKS YI S+MGPS+ ++I + D K Sbjct: 91 ADLAGEEELIDSISKGEMNFDLLISTPDMMPKVAKLGRVLGPRGLMPNPKAGTVTTDLISSIKEFKAGKLEFRADRAGIVHVRFGKASFSPEDLLENLKVLHEAIDRNKPSGAKGRYWKSLYITSTMGPSVEIDIAALQDSK 232 The following BLAST results are available for this feature:
BLAST of CN188884 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >CN188884 ID=CN188884; Name=CN188884; organism=Citrus sinensis; type=EST; length=765bpback to top |