CN188884
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_GEOSF (50S ribosomal protein L1 OS=Geobacter sp. (strain FRC-32) GN=rplA PE=3 SV=1) HSP 1 Score: 149.828 bits (377), Expect = 1.514e-35 Identity = 69/138 (50.00%), Postives = 94/138 (68.12%), Query Frame = -1 Query: 352 ADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEM 765 AD VG DDL+ +I+ G+ EFD IA+PDMM V +GK+LGPRGLMPNPK GTVT ++ +A+ E K GKVE+R +K GI+H P GK F D L N LA + ++ +KP AKG Y K + S+MGP + L++ ++ Sbjct: 91 ADFVGADDLVAKIQEGWFEFDTAIATPDMMGVVGKIGKLLGPRGLMPNPKVGTVTFDVGRAVNESKSGKVEFRVEKAGIIHAPVGKVSFETDKLKENILALIDALVKSKPSAAKGTYIKKISVSSTMGPGVNLDVSDV 228
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_DEHSC (50S ribosomal protein L1 OS=Dehalococcoides sp. (strain CBDB1) GN=rplA PE=3 SV=1) HSP 1 Score: 149.828 bits (377), Expect = 1.514e-35 Identity = 73/138 (52.90%), Postives = 102/138 (73.91%), Query Frame = -1 Query: 358 ADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTT--NIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIK 765 AD+ GGD+LI++I+ GF++FD I++PDMM KV LGK+LG RGLMPNPK+GTV + + IEE +KG+VE++ D++GIVHI GKA F LL N + V +I +KP GAKG Y KSAY+ ++MGP +RL+++ Sbjct: 92 ADVYGGDELIKKIEAGFLDFDVAISTPDMMSKVGKLGKVLGRRGLMPNPKSGTVVPAEDFKKVIEEARKGRVEFKLDRSGIVHIILGKASFEGQMLLENMTSVVDAIIRSKPTGAKGQYIKSAYLATTMGPGVRLDLR 229
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_DEHSB (50S ribosomal protein L1 OS=Dehalococcoides sp. (strain BAV1) GN=rplA PE=3 SV=1) HSP 1 Score: 149.828 bits (377), Expect = 1.514e-35 Identity = 73/138 (52.90%), Postives = 102/138 (73.91%), Query Frame = -1 Query: 358 ADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTT--NIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIK 765 AD+ GGD+LI++I+ GF++FD I++PDMM KV LGK+LG RGLMPNPK+GTV + + IEE +KG+VE++ D++GIVHI GKA F LL N + V +I +KP GAKG Y KSAY+ ++MGP +RL+++ Sbjct: 92 ADVYGGDELIKKIEAGFLDFDVAISTPDMMSKVGKLGKVLGRRGLMPNPKSGTVVPAEDFKKVIEEARKGRVEFKLDRSGIVHIILGKASFEGQMLLENMTSVVDAIIRSKPTGAKGQYIKSAYLATTMGPGVRLDLR 229
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_PELPD (50S ribosomal protein L1 OS=Pelobacter propionicus (strain DSM 2379) GN=rplA PE=3 SV=1) HSP 1 Score: 149.443 bits (376), Expect = 1.978e-35 Identity = 72/138 (52.17%), Postives = 95/138 (68.84%), Query Frame = -1 Query: 352 ADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEM 765 AD VG +DL+ +I+ G+ EFD IA+PDMM V +GK+LGPRGLMPNPK GTVT + +A++E K GKVE+R +K GIVH P GK F D L N LA V+++ KP AKG+Y K + S+MGP I L+I ++ Sbjct: 92 ADYVGAEDLVSKIQEGWFEFDTAIATPDMMGVVGKIGKLLGPRGLMPNPKVGTVTFEVSRAVKESKAGKVEFRVEKAGIVHAPVGKVSFDADSLKGNLLALVEALVKAKPSAAKGIYIKKISMSSTMGPGINLDIADV 229
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_PARL1 (50S ribosomal protein L1 OS=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) GN=rplA PE=3 SV=1) HSP 1 Score: 149.443 bits (376), Expect = 1.978e-35 Identity = 69/133 (51.88%), Postives = 95/133 (71.43%), Query Frame = -1 Query: 367 ADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRL 765 AD+VG DDL E ++ G ++FD+ IA+PDMM V LGK+LGPRGLMPNPK GTVT ++ +A++ K G VE+R +K GI+H GKA FSED +L+N A + +++ KP GAKG Y K I S+MGP +++ Sbjct: 92 ADIVGDDDLAEIVQSGKIDFDRCIATPDMMPLVGRLGKVLGPRGLMPNPKVGTVTPDVAEAVKAAKGGAVEFRVEKAGIIHAGVGKASFSEDQILVNIRALIDAVQKAKPTGAKGTYIKRIAISSTMGPGVKV 224
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_DEHE1 (50S ribosomal protein L1 OS=Dehalococcoides ethenogenes (strain 195) GN=rplA PE=3 SV=1) HSP 1 Score: 149.443 bits (376), Expect = 1.978e-35 Identity = 71/138 (51.45%), Postives = 102/138 (73.91%), Query Frame = -1 Query: 358 ADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTT--NIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIK 765 AD+ GGD+LI++++ GF++FD I++PDMM KV LGK+LG RGLMPNPK+GTV + Q IEE +KG+VE++ D++GIVHI GKA F LL N + V +I +KP GAKG Y KSAY+ ++MGP ++++++ Sbjct: 92 ADVYGGDELIKKVEAGFLDFDVAISTPDMMSKVGKLGKVLGRRGLMPNPKSGTVVPAEDFKQVIEEARKGRVEFKLDRSGIVHIILGKASFEGQALLENMTSVVDAIIRSKPTGAKGQYIKSAYLATTMGPGVKMDLR 229
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_HYPNA (50S ribosomal protein L1 OS=Hyphomonas neptunium (strain ATCC 15444) GN=rplA PE=3 SV=1) HSP 1 Score: 149.058 bits (375), Expect = 2.583e-35 Identity = 68/137 (49.64%), Postives = 97/137 (70.80%), Query Frame = -1 Query: 355 ADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKE 765 AD+VG DDL E++ GGFM+FD++IA+PDMM V LGK+LGPRGLMPNPK GTVT N+ QA+++ K G VE++ +K GIVH GKA FS+ D+ N A + ++ +P GAKG + + + S+MG + +++ E Sbjct: 92 ADIVGADDLFEKVNGGFMDFDRVIATPDMMGLVGRLGKVLGPRGLMPNPKVGTVTPNVAQAVKDAKGGAVEFKVEKAGIVHAGVGKASFSDADIEKNVQAFISAVVKARPSGAKGTFVRKVTLSSTMGTGVAIDLAE 228
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_GEOUR (50S ribosomal protein L1 OS=Geobacter uraniireducens (strain Rf4) GN=rplA PE=3 SV=1) HSP 1 Score: 149.058 bits (375), Expect = 2.583e-35 Identity = 69/138 (50.00%), Postives = 94/138 (68.12%), Query Frame = -1 Query: 352 ADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEM 765 AD VG DDL+ +I+ G+ +FD IA+PDMM V +GK+LGPRGLMPNPK GTVT ++ +A+ E K GKVE+R +K GI+H P GK F D L N LA V ++ +KP AKG Y K + S+MGP + L++ ++ Sbjct: 91 ADFVGADDLVAKIQEGWFDFDTAIATPDMMGVVGKIGKLLGPRGLMPNPKVGTVTFDVGRAVNESKSGKVEFRVEKAGIIHAPVGKVSFDADKLKENILALVDALVKSKPSAAKGTYIKKISVSSTMGPGVNLDVSDV 228
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_DESAA (50S ribosomal protein L1 OS=Desulfatibacillum alkenivorans (strain AK-01) GN=rplA PE=3 SV=1) HSP 1 Score: 149.058 bits (375), Expect = 2.583e-35 Identity = 65/134 (48.51%), Postives = 97/134 (72.39%), Query Frame = -1 Query: 364 ADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLN 765 AD VG DDL+E+I+GG+++FDK IA+PDMM V +G+ILGPRGLMPN K GTVT ++ +A++E K GK+++R ++ GI+H P GK F + LL N A ++++ KP AKG Y KS + ++MGP ++++ Sbjct: 92 ADFVGNDDLVEKIQGGWLDFDKAIATPDMMGTVGKMGRILGPRGLMPNAKTGTVTFDVAKAVQELKAGKIDFRVERAGILHAPMGKVSFGAEKLLDNISAFFETVQRLKPSAAKGTYMKSIAVSTTMGPGVKID 225
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_RHOCS (50S ribosomal protein L1 OS=Rhodospirillum centenum (strain ATCC 51521 / SW) GN=rplA PE=3 SV=1) HSP 1 Score: 148.673 bits (374), Expect = 3.373e-35 Identity = 75/139 (53.96%), Postives = 96/139 (69.06%), Query Frame = -1 Query: 349 ADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEML 765 AD+VG +DL ++I+ G FD+ IA+PDMM V LGKILGPRGLMPNPK GTVT N+ +A++ K G VE+RA+KTGIVH GKA FSE L N A V +I KP GAKG Y + + S+MGP I+L+I ++ Sbjct: 92 ADIVGAEDLADKIQAGEFNFDRCIATPDMMGVVGRLGKILGPRGLMPNPKLGTVTPNVAEAVKAAKGGAVEFRAEKTGIVHAGVGKASFSEQALEENIRAFVSAINRAKPSGAKGTYIEKVSLSSTMGPGIKLDIPALV 230 The following BLAST results are available for this feature:
BLAST of CN188884 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >CN188884 ID=CN188884; Name=CN188884; organism=Citrus sinensis; type=EST; length=765bpback to top |