CN188884
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_CHLTR (50S ribosomal protein L1 OS=Chlamydia trachomatis GN=rplA PE=3 SV=1) HSP 1 Score: 135.191 bits (339), Expect = 3.859e-31 Identity = 62/139 (44.60%), Postives = 94/139 (67.63%), Query Frame = -1 Query: 349 ADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEML 765 AD VG DDL+E+IKGG+++FD +A+PDMM +V LGK+LGPR LMP PKAGTVTT++ + + E +KGK+E++AD+ G+ ++ K F + N A ++ KP AKG Y + I S+MGP + ++ +E++ Sbjct: 92 ADFVGSDDLVEKIKGGWVDFDVAVATPDMMREVGKLGKVLGPRNLMPTPKAGTVTTDVVKTVAELRKGKIEFKADRAGVCNVGVAKLSFDSAQIKENVEALCAALVKAKPATAKGQYLVNFTISSTMGPGVTVDTRELI 230
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_CHLTA (50S ribosomal protein L1 OS=Chlamydia trachomatis (strain A/HAR-13 / ATCC VR-571B) GN=rplA PE=3 SV=1) HSP 1 Score: 135.191 bits (339), Expect = 3.859e-31 Identity = 62/139 (44.60%), Postives = 94/139 (67.63%), Query Frame = -1 Query: 349 ADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEML 765 AD VG DDL+E+IKGG+++FD +A+PDMM +V LGK+LGPR LMP PKAGTVTT++ + + E +KGK+E++AD+ G+ ++ K F + N A ++ KP AKG Y + I S+MGP + ++ +E++ Sbjct: 92 ADFVGSDDLVEKIKGGWVDFDVAVATPDMMREVGKLGKVLGPRNLMPTPKAGTVTTDVVKTVAELRKGKIEFKADRAGVCNVGVAKLSFDSAQIKENVEALCAALVKAKPATAKGQYLVNFTISSTMGPGVTVDTRELI 230
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_BARHE (50S ribosomal protein L1 OS=Bartonella henselae GN=rplA PE=3 SV=1) HSP 1 Score: 135.191 bits (339), Expect = 3.859e-31 Identity = 66/134 (49.25%), Postives = 89/134 (66.42%), Query Frame = -1 Query: 364 ADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLN 765 AD+VG +DL E I GG ++FD+ IA+PDMM V LGKILGPR LMPNPK GTVT ++ A++ K G VE+R +K GIVH GKA F + ++ N A ++ KP+GAKG Y K + S+MG I+++ Sbjct: 92 ADIVGAEDLFESINGGAIDFDRCIATPDMMPLVGRLGKILGPRNLMPNPKVGTVTLDVANAVKASKGGAVEFRVEKAGIVHAGIGKASFGVEKIVENIKAFASAVIKAKPQGAKGEYIKRVAVSSTMGVGIKVD 225
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_STRSF (50S ribosomal protein L1 OS=Streptomyces sp. (strain FRI-5) GN=rplA PE=3 SV=1) HSP 1 Score: 134.806 bits (338), Expect = 5.041e-31 Identity = 66/136 (48.53%), Postives = 93/136 (68.38%), Query Frame = -1 Query: 364 ADLVGGDDLIEQIKGG--FMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLN 765 AD+VG D+LI +I G EFD ++A+PD+M KV LG++LGPRGLMPNPK GTVT ++ +A+ + K GK+E+R DK +H GK FS++ L+ N+ AA+ I KP AKG Y K A + ++MGP I+L+ Sbjct: 91 ADIVGDDELINEIAKGNRLNEFDAVVATPDLMGKVGRLGRVLGPRGLMPNPKTGTVTMDVAKAVTDIKGGKIEFRVDKHSNLHFIIGKVSFSDEQLVENYAAALDEIVRLKPSAAKGRYIKKAALSTTMGPGIQLD 226
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_STRS2 (50S ribosomal protein L1 OS=Streptococcus suis (strain 98HAH33) GN=rplA PE=3 SV=1) HSP 1 Score: 134.806 bits (338), Expect = 5.041e-31 Identity = 67/134 (50.00%), Postives = 88/134 (65.67%), Query Frame = -1 Query: 364 ADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLN 765 AD VG DDL+ +I GG+++FD +IA+PDMM V LG++LGPR LMPNPK GTVT ++ +A+EE K GK+ YRADK GIV GK F D L+ NF A + KP AKG Y S I ++ G I+++ Sbjct: 92 ADFVGEDDLVAKINGGWLDFDVVIATPDMMAVVGRLGRVLGPRNLMPNPKTGTVTMDVAKAVEESKGGKITYRADKAGIVQALIGKVSFDADKLVENFKAFHDVMAKAKPATAKGTYMTSVSITTTQGVGIKVD 225
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_STRMU (50S ribosomal protein L1 OS=Streptococcus mutans GN=rplA PE=3 SV=1) HSP 1 Score: 134.806 bits (338), Expect = 5.041e-31 Identity = 66/134 (49.25%), Postives = 89/134 (66.42%), Query Frame = -1 Query: 364 ADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLN 765 AD VG DDL+++I GG+++FD +IA+PDMM V LG++LGPR LMPNPK GTVT ++ +A+EE K GK+ YRADK G V GK F D L+ NF A I KP AKG Y + + ++ GP I+++ Sbjct: 92 ADFVGEDDLVQKINGGWLDFDVVIATPDMMAIVGRLGRVLGPRNLMPNPKTGTVTMDVAKAVEESKGGKITYRADKAGNVQTIIGKVSFDADKLVENFKAFNDVIAKAKPATAKGTYITNLVLTTTQGPGIKVD 225
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_SHEPW (50S ribosomal protein L1 OS=Shewanella piezotolerans (strain WP3 / JCM 13877) GN=rplA PE=3 SV=1) HSP 1 Score: 134.806 bits (338), Expect = 5.041e-31 Identity = 68/142 (47.89%), Postives = 90/142 (63.38%), Query Frame = -1 Query: 340 ADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEMLDYK 765 A+LVG D+L Q+K G M FD +IASPD M V LG+ILGPRGLMPNPK GTVT N+ +A++ K G+V YR DK GI+H GK DF L N A + +++ KP AKGV+ K I ++MG + ++ + D K Sbjct: 92 AELVGMDELAAQVKAGEMNFDVVIASPDAMRVVGQLGQILGPRGLMPNPKTGTVTPNVAEAVKNAKAGQVRYRNDKNGIIHTTIGKVDFETAQLKENLEALLAALKKAKPAAAKGVFLKKVSISTTMGAGVAVDQSTLEDVK 233
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_RHILO (50S ribosomal protein L1 OS=Rhizobium loti GN=rplA PE=3 SV=1) HSP 1 Score: 134.806 bits (338), Expect = 5.041e-31 Identity = 64/138 (46.38%), Postives = 91/138 (65.94%), Query Frame = -1 Query: 352 ADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEM 765 AD+VG +DL++ ++ G ++FD+ IA+PDMM V LGK+LGPRG+MPNPK GTVTT++ A++ K G VE+R +K GIVH GK F L N A ++ KP GAKG Y K + S+MGP ++L++ + Sbjct: 92 ADIVGAEDLVDIVQKGTIDFDRCIATPDMMPLVGRLGKVLGPRGMMPNPKVGTVTTDVAAAVKASKGGAVEFRVEKAGIVHAGVGKVSFDVKALEENIRAFADAVTKAKPAGAKGNYVKKVSVTSTMGPGLKLDVSTL 229
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_POLSQ (50S ribosomal protein L1 OS=Polynucleobacter sp. (strain QLW-P1DMWA-1) GN=rplA PE=3 SV=1) HSP 1 Score: 134.806 bits (338), Expect = 5.041e-31 Identity = 64/134 (47.76%), Postives = 92/134 (68.66%), Query Frame = -1 Query: 364 ADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLN 765 A++VG ++L EQIKGG ++FD LIASPD M V +LG++LGPRGLMPNPK GTVT ++ A++ K G+V++R DK GIVH G+ F L N LA ++++ KP +KG+Y K + S+MG +R++ Sbjct: 92 AEIVGMEELAEQIKGGKIDFDILIASPDTMKIVGTLGQVLGPRGLMPNPKVGTVTPDVATAVKNAKAGQVQFRVDKAGIVHASIGRRSFEPAALKSNLLALLEALNKAKPPASKGIYLKKVAVSSTMGAGVRVD 225
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_NITEU (50S ribosomal protein L1 OS=Nitrosomonas europaea GN=rplA PE=3 SV=2) HSP 1 Score: 134.806 bits (338), Expect = 5.041e-31 Identity = 67/134 (50.00%), Postives = 90/134 (67.16%), Query Frame = -1 Query: 364 ADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLN 765 AD+VG +DL E++K G + FD IASPD M V LG+ILGPRGLMPNPK GTVT ++ AI K G+V++RADK GIVH G+A F + L N +A V ++ +KP +KGVY + I S+MG +R++ Sbjct: 92 ADIVGFEDLAERVKAGEINFDLAIASPDAMRVVGQLGQILGPRGLMPNPKVGTVTVDVINAIRNAKAGQVQFRADKAGIVHCTVGRASFDVEALRANIMALVDALNKSKPTTSKGVYLRKMAISSTMGVGVRVD 225 The following BLAST results are available for this feature:
BLAST of CN188884 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >CN188884 ID=CN188884; Name=CN188884; organism=Citrus sinensis; type=EST; length=765bpback to top |