CN188884

Overview
NameCN188884
Unique NameCN188884
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length765
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_FRAP2 (50S ribosomal protein L1 OS=Francisella philomiragia subsp. philomiragia (strain ATCC 25017) GN=rplA PE=3 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 5.041e-31
Identity = 63/138 (45.65%), Postives = 92/138 (66.67%), Query Frame = -1
Query:  352 ADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEM 765
            AD+VG +DL +++K G M+FD +IASPD M  V  LG+ILGP+GLMPNPK GTVT ++ +A+ + K G+V YR DK GI+H   GK +F+ D L  N    +  ++  KP  +KG+Y K   + S+MGP I ++  ++
Sbjct:   92 ADVVGMEDLADEVKKGNMDFDVVIASPDSMRVVGQLGQILGPKGLMPNPKVGTVTMDVAKAVRDAKAGQVRYRVDKAGIIHTTIGKVNFTSDALKQNLEQLLTDLKKAKPSVSKGIYLKKVSVSSTMGPGISVDFSDL 229          
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_BARBK (50S ribosomal protein L1 OS=Bartonella bacilliformis (strain ATCC 35685 / KC583) GN=rplA PE=3 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 5.041e-31
Identity = 66/135 (48.89%), Postives = 89/135 (65.93%), Query Frame = -1
Query:  361 ADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNI 765
            AD+VG +DL E + GG + FD+ IA+PDMM  V  LGK+LGPR LMPNPK GTVTT+I  A++  K G VE+R +K GIVH   GKA F  + L+ N    V ++   KP+GAK  Y K   + S+MG  I++++
Sbjct:   92 ADIVGAEDLFETVNGGTINFDRCIATPDMMPLVGRLGKVLGPRSLMPNPKVGTVTTDIAGAVKASKGGAVEFRVEKAGIVHAGVGKASFGAEQLIENIKTFVSAVIKAKPQGAKSEYIKRVAVSSTMGIGIKVDL 226          
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_BACFR (50S ribosomal protein L1 OS=Bacteroides fragilis GN=rplA PE=3 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 5.041e-31
Identity = 61/138 (44.20%), Postives = 94/138 (68.12%), Query Frame = -1
Query:  352 ADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEM 765
            AD VG D+ IE+IKGG+ + D +I  P +M K+ +LG++LGPRGLMPNPK+GTVT ++ +A+ E K+GK++++ DK+GIVH   GK  F+ + +  N    + ++   KP  AKG Y KS Y+ S+M   I+++ K +
Sbjct:   92 ADYVGLDEYIEKIKGGWTDIDVIITMPSIMGKIGALGRVLGPRGLMPNPKSGTVTMDVAKAVREVKQGKIDFKVDKSGIVHTSIGKVSFTAEQIRDNAKEFISTLNKLKPTAAKGTYIKSIYLSSTMSAGIKIDPKSV 229          
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_BACFN (50S ribosomal protein L1 OS=Bacteroides fragilis (strain ATCC 25285 / NCTC 9343) GN=rplA PE=3 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 5.041e-31
Identity = 61/138 (44.20%), Postives = 94/138 (68.12%), Query Frame = -1
Query:  352 ADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEM 765
            AD VG D+ IE+IKGG+ + D +I  P +M K+ +LG++LGPRGLMPNPK+GTVT ++ +A+ E K+GK++++ DK+GIVH   GK  F+ + +  N    + ++   KP  AKG Y KS Y+ S+M   I+++ K +
Sbjct:   92 ADYVGLDEYIEKIKGGWTDIDVIITMPSIMGKIGALGRVLGPRGLMPNPKSGTVTMDVAKAVREVKQGKIDFKVDKSGIVHTSIGKVSFTAEQIRDNAKEFISTLNKLKPTAAKGTYIKSIYLSSTMSAGIKIDPKSV 229          
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_YERE8 (50S ribosomal protein L1 OS=Yersinia enterocolitica serotype O:8 / biotype 1B (strain 8081) GN=rplA PE=3 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 6.583e-31
Identity = 67/134 (50.00%), Postives = 89/134 (66.42%), Query Frame = -1
Query:  364 ADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLN 765
            A+LVG +DL +QIK G M FD +IASPD M  V  LG+ILGPRGLMPNPK GTVT N+ +A++  K G+V YR DK GI+H   GK DF  + L  N  + V +++  KP  AKGVY K   + ++MG  + ++
Sbjct:   92 AELVGMEDLADQIKKGEMNFDVVIASPDAMRVVGQLGQILGPRGLMPNPKVGTVTPNVAEAVKNAKAGQVRYRNDKNGIIHTTIGKVDFDSEKLKENLESLVVALKRAKPATAKGVYIKKISLSTTMGAGVAID 225          
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_VIBPA (50S ribosomal protein L1 OS=Vibrio parahaemolyticus GN=rplA PE=3 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 6.583e-31
Identity = 65/134 (48.51%), Postives = 89/134 (66.42%), Query Frame = -1
Query:  364 ADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLN 765
            AD+VG +DL EQ+K G M FD ++ASPD M  V  LG ILGPRGLMPNPK GTVT N+ +A++  K G+V YR DK GI+H   GKA+FS + +  N  A + +++  KP  AKG + K   I ++MG  + ++
Sbjct:   92 ADIVGMEDLAEQVKKGEMNFDVVVASPDAMRVVGQLGTILGPRGLMPNPKVGTVTPNVAEAVKNAKAGQVRYRNDKNGIIHTTIGKANFSAEQIKENLEALLVALKKAKPSSAKGTFLKKVSISTTMGAGVAVD 225          
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_VIBHB (50S ribosomal protein L1 OS=Vibrio harveyi (strain ATCC BAA-1116 / BB120) GN=rplA PE=3 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 6.583e-31
Identity = 65/134 (48.51%), Postives = 89/134 (66.42%), Query Frame = -1
Query:  364 ADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLN 765
            AD+VG +DL EQ+K G M FD ++ASPD M  V  LG ILGPRGLMPNPK GTVT N+ +A++  K G+V YR DK GI+H   GKA+FS + +  N  A + +++  KP  AKG + K   I ++MG  + ++
Sbjct:   92 ADIVGMEDLAEQVKKGEMNFDVVVASPDAMRVVGQLGTILGPRGLMPNPKVGTVTPNVAEAVKNAKAGQVRYRNDKNGIIHTTIGKANFSAEQIKENLEALLVALKKAKPSSAKGTFLKKVSISTTMGAGVAVD 225          
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_STRAW (50S ribosomal protein L1 OS=Streptomyces avermitilis GN=rplA PE=3 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 6.583e-31
Identity = 63/134 (47.01%), Postives = 92/134 (68.66%), Query Frame = -1
Query:  364 ADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLN 765
            AD+VG D+LI+++  G ++FD ++A+PD+M KV  LG++LGPRGLMPNPK GTVT ++ +A+ E K GK+E+R DK   +H   GK  F +  L+ N+ AA+  I   KP  AKG Y K A I +++GP I ++
Sbjct:   92 ADIVGSDELIDEVSKGRLDFDAVVATPDLMGKVGRLGRVLGPRGLMPNPKTGTVTPDVVKAVNEIKGGKIEFRVDKHSNLHFIIGKTSFDDTQLVENYGAALDEILRLKPSAAKGRYIKKAAISTTIGPGIPID 225          
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_SHEB9 (50S ribosomal protein L1 OS=Shewanella baltica (strain OS195) GN=rplA PE=3 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 6.583e-31
Identity = 68/134 (50.75%), Postives = 89/134 (66.42%), Query Frame = -1
Query:  364 ADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLN 765
            A+LVG DDL E+IK G M FD +IASPD M  V  LG+ILGPRGLMPNPK GTVT N+ +A++  K G+V YR DK GI+H   GK DF+   L  N  A V +++  KP  AKG++ K   I ++MG  + ++
Sbjct:   92 AELVGMDDLAEKIKAGEMNFDVVIASPDAMRVVGMLGQILGPRGLMPNPKTGTVTPNVAEAVKNAKAGQVRYRNDKNGIIHTTIGKVDFTPVQLKENLEALVSALKKAKPAVAKGIFVKKISISTTMGAGVAVD 225          
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_SHEB8 (50S ribosomal protein L1 OS=Shewanella baltica (strain OS185) GN=rplA PE=3 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 6.583e-31
Identity = 68/134 (50.75%), Postives = 89/134 (66.42%), Query Frame = -1
Query:  364 ADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLN 765
            A+LVG DDL E+IK G M FD +IASPD M  V  LG+ILGPRGLMPNPK GTVT N+ +A++  K G+V YR DK GI+H   GK DF+   L  N  A V +++  KP  AKG++ K   I ++MG  + ++
Sbjct:   92 AELVGMDDLAEKIKAGEMNFDVVIASPDAMRVVGMLGQILGPRGLMPNPKTGTVTPNVAEAVKNAKAGQVRYRNDKNGIIHTTIGKVDFTPVQLKENLEALVSALKKAKPAVAKGIFVKKISISTTMGAGVAVD 225          
The following BLAST results are available for this feature:
BLAST of CN188884 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL1_FRAP25.041e-3145.6550S ribosomal protein L1 OS=Francisella philomirag... [more]
RL1_BARBK5.041e-3148.8950S ribosomal protein L1 OS=Bartonella bacilliform... [more]
RL1_BACFR5.041e-3144.2050S ribosomal protein L1 OS=Bacteroides fragilis G... [more]
RL1_BACFN5.041e-3144.2050S ribosomal protein L1 OS=Bacteroides fragilis (... [more]
RL1_YERE86.583e-3150.0050S ribosomal protein L1 OS=Yersinia enterocolitic... [more]
RL1_VIBPA6.583e-3148.5150S ribosomal protein L1 OS=Vibrio parahaemolyticu... [more]
RL1_VIBHB6.583e-3148.5150S ribosomal protein L1 OS=Vibrio harveyi (strain... [more]
RL1_STRAW6.583e-3147.0150S ribosomal protein L1 OS=Streptomyces avermitil... [more]
RL1_SHEB96.583e-3150.7550S ribosomal protein L1 OS=Shewanella baltica (st... [more]
RL1_SHEB86.583e-3150.7550S ribosomal protein L1 OS=Shewanella baltica (st... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0006P10_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0006P10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188884 ID=CN188884; Name=CN188884; organism=Citrus sinensis; type=EST; length=765bp
TTTTTTTTTTTTTTTTTACAAGAATGGAAAAATATTCAGTAGCCATTCAA
GTAATTTTACAGAAAAAAAAATTGCGGTAATGAACCTGAGAGTGGGCGAT
AATAATAATATCTTTTTCAGTACGGAAAAAAGCCATGCTGTATGCATTTT
TCCTTTTTTTTATTTGCTACAATCTCATCCACATTGATAATCAAGATCTC
CTCACCTCACCATAATTCACTCTCCTACAACTTTTGCCAAGCAGTGGCAA
GCCCTGGCATGGGTATCAAAGAGGCTGACTGAACAGTTAAAGCTATCATT
TACAAAATTTAGTTATGTCATTTAGAAATTTGATGGAAGCTTGTAATCGA
GCATTTCTTTTATGTTTAATCGAATGGAAGGTCCCATTGATGAGCAAATG
TAAGCACTTTTCCAGTACACTCCTTTGGCCCCTTTTGGCTTGTTTGCTTC
AATTGATTTAACAGCAGCAAGGAAGTTTATGAGGAGGTCATCTTCAGAAA
AATCAGCTTTCCCAAAAGGTATGTGGACAATCCCAGTTTTATCTGCTCTA
TATTCAACTTTTCCCTTCTTGAATTCTTCTATGGCCTGAGGTATGTTAGT
TGTAACAGTACCAGCTTTAGGATTTGGCATGAGTCCCCGTGGTCCAAGAA
TTTTTCCTAGGCTGGCAACCTTAACCATCATATCTGGTGAAGCAATTAGC
TTGTCGAACTCCATGAATCCTCCTTTTATTTGTTCAATCAAGTCATCACC
ACCAACCAAATCTGC
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