CN188884
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_PROM5 (50S ribosomal protein L1 OS=Prochlorococcus marinus (strain MIT 9515) GN=rplA PE=3 SV=1) HSP 1 Score: 182.185 bits (461), Expect = 2.753e-45 Identity = 86/142 (60.56%), Postives = 111/142 (78.17%), Query Frame = -1 Query: 340 ADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEMLDYK 765 ADL G +DL+E I G M+FD LIA+PDMM KVA LG++LGPRGLMPNPKAGTVT++I AI+EFK GK+E+RADK GIVH+ FGKA F+E+ L N +SI+ NKP GAKG YWK+ Y+ S+MGPS++++I + DY+ Sbjct: 91 ADLFGEEDLVESINKGNMDFDLLIATPDMMPKVAKLGRVLGPRGLMPNPKAGTVTSDIASAIKEFKAGKLEFRADKAGIVHVRFGKASFTENALFENLKTLQESIDKNKPSGAKGKYWKTFYVTSTMGPSVQVDINALQDYQ 232
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_PROM2 (50S ribosomal protein L1 OS=Prochlorococcus marinus (strain MIT 9215) GN=rplA PE=3 SV=1) HSP 1 Score: 182.185 bits (461), Expect = 2.753e-45 Identity = 87/142 (61.27%), Postives = 110/142 (77.46%), Query Frame = -1 Query: 340 ADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEMLDYK 765 ADL G +DL+E I G MEFD LIA+PDMM KVA LG++LGPRGLMPNPKAGTVT +I AI+EFK GK+E+RADK GIVH+ FGKA F+++ L N +SI+ NKP GAKG YWKS Y+ S+MGPS++++I + DY+ Sbjct: 91 ADLFGEEDLVESINKGNMEFDLLIATPDMMPKVAKLGRVLGPRGLMPNPKAGTVTNDIGNAIKEFKAGKLEFRADKAGIVHVRFGKASFTKEALFENLKTLQESIDKNKPSGAKGKYWKSFYVTSTMGPSVQVDINAVQDYQ 232
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_PROM0 (50S ribosomal protein L1 OS=Prochlorococcus marinus (strain MIT 9301) GN=rplA PE=3 SV=1) HSP 1 Score: 181.415 bits (459), Expect = 4.696e-45 Identity = 86/142 (60.56%), Postives = 110/142 (77.46%), Query Frame = -1 Query: 340 ADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEMLDYK 765 ADL G +DL+E I G MEFD LIA+PDMM KVA LG++LGPRGLMPNPKAGTVT +I AI+EFK GK+E+RADK GIVH+ FGKA F+++ L N +SI+ NKP GAKG YWK+ Y+ S+MGPS++++I + DY+ Sbjct: 91 ADLFGEEDLVESINKGNMEFDLLIATPDMMPKVAKLGRVLGPRGLMPNPKAGTVTNDIANAIKEFKAGKLEFRADKAGIVHVRFGKASFTKEALFDNLKTLQESIDKNKPSGAKGKYWKTFYVTSTMGPSVQVDINAVQDYQ 232
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_SYNPW (50S ribosomal protein L1 OS=Synechococcus sp. (strain WH7803) GN=rplA PE=3 SV=1) HSP 1 Score: 181.03 bits (458), Expect = 6.133e-45 Identity = 86/140 (61.43%), Postives = 109/140 (77.86%), Query Frame = -1 Query: 346 ADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEMLD 765 A+L G +DL+E I G M+FD LIA+PDMM KVA LG++LGPRGLMPNPKAGTVTT++ AI EFK GK+E+RAD+TGIVH+ FGKA FSE +LL N ++I+ NKP GAKG YWKS Y+ S+MGPS+ ++I + D Sbjct: 91 AELAGDEDLVETISKGEMDFDLLIATPDMMPKVAKLGRVLGPRGLMPNPKAGTVTTDLAAAINEFKAGKLEFRADRTGIVHVRFGKASFSEGNLLDNLKTLQETIDRNKPSGAKGRYWKSLYVTSTMGPSVEVDIAALQD 230
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_CYAP7 (50S ribosomal protein L1 OS=Cyanothece sp. (strain PCC 7424) GN=rplA PE=3 SV=1) HSP 1 Score: 181.03 bits (458), Expect = 6.133e-45 Identity = 80/143 (55.94%), Postives = 116/143 (81.12%), Query Frame = -1 Query: 337 ADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEMLDYKL 765 AD+VG ++LI++I+ G M+F+ LIA+PDMM KVA LG++LGPRGLMP+PK GTVTT++ AI+EFK GK E+RAD+TGIVH+ FGKA F+ +DLL+N A ++I+ N+P GAKG YW++ ++ +SMGPSI++++ + D K+ Sbjct: 93 ADIVGSEELIDEIQNGMMDFEVLIATPDMMPKVAKLGRLLGPRGLMPSPKGGTVTTDLAAAIQEFKAGKQEFRADRTGIVHVMFGKASFTAEDLLVNLKALQETIDRNRPSGAKGRYWRTVFVSASMGPSIQVDVNSLRDLKV 235
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_ACAM1 (50S ribosomal protein L1 OS=Acaryochloris marina (strain MBIC 11017) GN=rplA PE=3 SV=1) HSP 1 Score: 181.03 bits (458), Expect = 6.133e-45 Identity = 86/143 (60.14%), Postives = 113/143 (79.02%), Query Frame = -1 Query: 337 ADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEMLDYKL 765 AD+VG ++LI +I+ G M+FD LIA+PDMM +VA +G+ILGPRGLMP+PKAGTVT ++PQAIEEFK GK+E+RAD+TGIVH+ FGKA FS DLL N A +I+ N+P GAKG YW+S Y+ ++MGPSI ++I + D L Sbjct: 92 ADVVGSEELITEIQQGRMDFDLLIATPDMMPQVAKVGRILGPRGLMPSPKAGTVTFDLPQAIEEFKAGKLEFRADRTGIVHVMFGKAKFSAQDLLENLKALQDTIDRNRPSGAKGRYWRSLYVSATMGPSIEVDISSLRDLNL 234
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_PROMP (50S ribosomal protein L1 OS=Prochlorococcus marinus subsp. pastoris (strain CCMP1986 / MED4) GN=rplA PE=3 SV=1) HSP 1 Score: 180.644 bits (457), Expect = 8.010e-45 Identity = 86/142 (60.56%), Postives = 110/142 (77.46%), Query Frame = -1 Query: 340 ADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEMLDYK 765 ADL G +DL+E I G M+FD LIA+PDMM KVA LG++LGPRGLMPNPKAGTVT +I AI+EFK GK+E+RADK GIVH+ FGKA F+E+ L N +SI+ NKP GAKG YW+S Y+ S+MGPS++++I + DY+ Sbjct: 91 ADLFGEEDLVESINKGNMDFDLLIATPDMMPKVAKLGRVLGPRGLMPNPKAGTVTGDIASAIKEFKAGKLEFRADKAGIVHVRFGKASFTENALFENLKTLQESIDKNKPSGAKGKYWRSFYLTSTMGPSVQVDINALQDYQ 232
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RK1_GRATL (50S ribosomal protein L1, chloroplastic OS=Gracilaria tenuistipitata var. liui GN=rpl1 PE=3 SV=1) HSP 1 Score: 180.644 bits (457), Expect = 8.010e-45 Identity = 83/136 (61.03%), Postives = 114/136 (83.82%), Query Frame = -1 Query: 358 ADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIK 765 AD+VGG+DLI++IK G ++FDKLIA+PDMM+ +A LGKILGP+GLMP+PKAGTVT N+ I+EFK GK+EY+ D++GI+HIPFGK +F+ +DL IN + +SI+ N+P+G+KG YWKS +I S+MGPSI L+I+ Sbjct: 92 ADIVGGEDLIDEIKKGRLDFDKLIATPDMMMSIAKLGKILGPKGLMPSPKAGTVTHNLITTIKEFKAGKLEYKIDRSGILHIPFGKLNFNVEDLHINLITLQESIDRNRPQGSKGKYWKSVHINSTMGPSIPLDIQ 227
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_PROM9 (50S ribosomal protein L1 OS=Prochlorococcus marinus (strain MIT 9312) GN=rplA PE=3 SV=1) HSP 1 Score: 180.259 bits (456), Expect = 1.046e-44 Identity = 85/142 (59.86%), Postives = 110/142 (77.46%), Query Frame = -1 Query: 340 ADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEMLDYK 765 ADL G +DL+E I G M+FD LIA+PDMM KVA LG++LGPRGLMPNPKAGTVT +I AI+EFK GK+E+RADK GIVH+ FGKA F+++ L N +SI+ NKP G+KG YWKS Y+ S+MGPS++++I + DY+ Sbjct: 91 ADLFGEEDLVESINKGNMDFDLLIATPDMMPKVAKLGRVLGPRGLMPNPKAGTVTNDIANAIKEFKAGKLEFRADKAGIVHVRFGKASFTKEALFDNLKTLQESIDKNKPSGSKGKYWKSFYVTSTMGPSVQVDISAVQDYQ 232
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_PROMM (50S ribosomal protein L1 OS=Prochlorococcus marinus (strain MIT 9313) GN=rplA PE=3 SV=1) HSP 1 Score: 179.874 bits (455), Expect = 1.366e-44 Identity = 86/140 (61.43%), Postives = 108/140 (77.14%), Query Frame = -1 Query: 346 ADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEMLD 765 A+L G DDL+E I G M+FD LIA+PDMM KVA LG++LGPRGLMPNPKAGTVTT++ AI+EFK GK+E+RAD+ GIVH+ FGKA FS D LL N ++I+ NKP GAKG YWKS YI S+MGPS+ +++ + D Sbjct: 91 AELAGDDDLVESIGKGQMDFDLLIATPDMMPKVAKLGRVLGPRGLMPNPKAGTVTTDLAAAIKEFKAGKLEFRADRAGIVHVRFGKASFSADALLENLKTLQETIDRNKPSGAKGRYWKSLYITSTMGPSVEVDVTALQD 230 The following BLAST results are available for this feature:
BLAST of CN188884 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >CN188884 ID=CN188884; Name=CN188884; organism=Citrus sinensis; type=EST; length=765bpback to top |