CN188884

Overview
NameCN188884
Unique NameCN188884
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length765
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_DESRM (50S ribosomal protein L1 OS=Desulfotomaculum reducens (strain MI-1) GN=rplA PE=3 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 3.729e-34
Identity = 67/134 (50.00%), Postives = 89/134 (66.42%), Query Frame = -1
Query:  364 ADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLN 765
            AD VG +D++E+I+GG++ FD  IA+PDMM  V  LG++LGPRGLMPNPK GTVT  +  A+ + K GK+ YR DK GI+H P GKA F    L  NF     ++   KP  AKG Y K+  + S+MGP +R+N
Sbjct:   92 ADFVGAEDMLEKIQGGWLGFDVAIATPDMMGTVGRLGRVLGPRGLMPNPKTGTVTFEVGDAVRDAKGGKITYRTDKVGIIHAPIGKASFDTQKLAENFKTLADTLVRIKPASAKGTYMKTITVSSTMGPGVRIN 225          
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_DESAP (50S ribosomal protein L1 OS=Desulforudis audaxviator (strain MP104C) GN=rplA PE=3 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 3.729e-34
Identity = 66/139 (47.48%), Postives = 94/139 (67.63%), Query Frame = -1
Query:  349 ADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEML 765
            AD VGG++++ +I+GG+MEFD  IA+PDMM  V  +G+ILGPRGLMPNPK GTVT +I +A+ E K GK++YR DK G +H P GK  F  + L  N    + ++   KP  AKG Y +   + S+MGP +R+N ++ +
Sbjct:   92 ADYVGGEEMVAKIQGGWMEFDVAIATPDMMSAVGKIGRILGPRGLMPNPKTGTVTFDIARAVAEVKAGKIQYRVDKAGNIHAPIGKVSFEVEKLEENLKTLIDALIRAKPAAAKGQYLRGIVVTSTMGPGVRVNTRKFI 230          
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_CLOD6 (50S ribosomal protein L1 OS=Clostridium difficile (strain 630) GN=rplA PE=3 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 3.729e-34
Identity = 68/135 (50.37%), Postives = 97/135 (71.85%), Query Frame = -1
Query:  364 ADLVGGDDLIEQIKG-GFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLN 765
            AD VG ++L+++I+G  + +FD ++A+PDMM  V  LG++LGP+GLMPNPK+GTVT ++ +AI+E K GKVEYR DKT I+H+P GK  F  + L  NF A + +I   KP  AKG Y +S  + SSMGP +++N
Sbjct:   92 ADFVGAEELVQKIQGENWFDFDIVVATPDMMGVVGRLGRVLGPKGLMPNPKSGTVTFDVAKAIDEIKAGKVEYRLDKTNIIHVPVGKVSFGGEKLTENFTALMDAIIKAKPAAAKGQYLRSITVASSMGPGVKIN 226          
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_THETN (50S ribosomal protein L1 OS=Thermoanaerobacter tengcongensis GN=rplA PE=3 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 4.871e-34
Identity = 68/135 (50.37%), Postives = 97/135 (71.85%), Query Frame = -1
Query:  364 ADLVGGDDLIEQI-KGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLN 765
            AD VG ++L+E+I K  + ++D +IA+PDMM  V  LGK+LGP+GLMPNPK+GTVT  + +A++E K GK+EYR DK GI+H+P GK  F ++ LL NF   + +I  +KP  AKG Y KS  + S+MGP +++N
Sbjct:   91 ADYVGAEELVEKIQKENWFDYDVVIATPDMMGVVGRLGKLLGPKGLMPNPKSGTVTFEVEKAVKEAKAGKIEYRIDKAGIIHVPIGKKSFGKEKLLENFRTVMDAIIKSKPAAAKGQYIKSVVLSSTMGPGVKVN 225          
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_RICAH (50S ribosomal protein L1 OS=Rickettsia akari (strain Hartford) GN=rplA PE=3 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 4.871e-34
Identity = 68/135 (50.37%), Postives = 97/135 (71.85%), Query Frame = -1
Query:  361 ADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNI 765
            ADLVG  ++I++IK G + FD  IA+PDMM  + S+ +ILGP+GLMPNPK GTVT +I  AI+  K G+VEYRA+K+GI+H   GK  FS+ DLL N  A ++++   KP G KG Y K+ Y+ S+MG S+++++
Sbjct:  101 ADLVGSTNIIDEIKSGKINFDVCIATPDMMAAIGSVARILGPKGLMPNPKLGTVTLDIKNAIKNAKSGQVEYRAEKSGIIHAGLGKLSFSDQDLLKNLNAFIEAVIKAKPSGLKGSYLKAMYLSSTMGASVQIDL 235          
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_MARMM (50S ribosomal protein L1 OS=Maricaulis maris (strain MCS10) GN=rplA PE=3 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 4.871e-34
Identity = 69/134 (51.49%), Postives = 95/134 (70.90%), Query Frame = -1
Query:  364 ADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLN 765
            AD+VG +DL+EQI+GG + FDK+IA+PDMM  V  LGK+LGPRG+MPNPK GTVT  + +A+ + K G VE+R +K GI+H   GKA F+E  L  N  A V +I   KP GAKG+Y +   + S+MGP ++++
Sbjct:   92 ADVVGAEDLMEQIQGGNINFDKVIATPDMMPLVGRLGKVLGPRGMMPNPKVGTVTMGVTKAVNDSKGGAVEFRVEKAGIIHAGVGKASFTEAALAENVRALVDAIVKAKPSGAKGLYVRRIALSSTMGPGVKID 225          
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_LEGPL (50S ribosomal protein L1 OS=Legionella pneumophila (strain Lens) GN=rplA PE=3 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 4.871e-34
Identity = 68/138 (49.28%), Postives = 95/138 (68.84%), Query Frame = -1
Query:  352 ADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEM 765
            AD+VG +DL ++IK G M FD +IA+PD M  V  LG+ILGPRGLMPNPK GTVTTN+  A+ + K G+V YR DK GI+H   GKADF+ +D+L N +A +  ++  KP  +KG Y K   + ++MGP + ++I  +
Sbjct:   92 ADIVGFEDLADKIKAGEMNFDVVIATPDAMRIVGQLGQILGPRGLMPNPKVGTVTTNVEAAVNDAKSGQVRYRTDKNGIIHCTVGKADFAPEDVLENVVALINDLKKAKPASSKGQYLKKISLSTTMGPGLPIDISSI 229          
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_LEGPH (50S ribosomal protein L1 OS=Legionella pneumophila subsp. pneumophila (strain Philadelphia 1 / ATCC 33152 / DSM 7513) GN=rplA PE=3 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 4.871e-34
Identity = 68/138 (49.28%), Postives = 95/138 (68.84%), Query Frame = -1
Query:  352 ADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEM 765
            AD+VG +DL ++IK G M FD +IA+PD M  V  LG+ILGPRGLMPNPK GTVTTN+  A+ + K G+V YR DK GI+H   GKADF+ +D+L N +A +  ++  KP  +KG Y K   + ++MGP + ++I  +
Sbjct:   92 ADIVGFEDLADKIKAGEMNFDVVIATPDAMRIVGQLGQILGPRGLMPNPKVGTVTTNVEAAVNDAKSGQVRYRTDKNGIIHCTVGKADFAPEDVLENVVALINDLKKAKPASSKGQYLKKISLSTTMGPGLPIDISSI 229          
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_LEGPC (50S ribosomal protein L1 OS=Legionella pneumophila (strain Corby) GN=rplA PE=3 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 4.871e-34
Identity = 68/138 (49.28%), Postives = 95/138 (68.84%), Query Frame = -1
Query:  352 ADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEM 765
            AD+VG +DL ++IK G M FD +IA+PD M  V  LG+ILGPRGLMPNPK GTVTTN+  A+ + K G+V YR DK GI+H   GKADF+ +D+L N +A +  ++  KP  +KG Y K   + ++MGP + ++I  +
Sbjct:   92 ADIVGFEDLADKIKAGEMNFDVVIATPDAMRIVGQLGQILGPRGLMPNPKVGTVTTNVEAAVNDAKSGQVRYRTDKNGIIHCTVGKADFAPEDVLENVVALINDLKKAKPASSKGQYLKKISLSTTMGPGLPIDISSI 229          
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_LEGPA (50S ribosomal protein L1 OS=Legionella pneumophila (strain Paris) GN=rplA PE=3 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 4.871e-34
Identity = 68/138 (49.28%), Postives = 95/138 (68.84%), Query Frame = -1
Query:  352 ADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEM 765
            AD+VG +DL ++IK G M FD +IA+PD M  V  LG+ILGPRGLMPNPK GTVTTN+  A+ + K G+V YR DK GI+H   GKADF+ +D+L N +A +  ++  KP  +KG Y K   + ++MGP + ++I  +
Sbjct:   92 ADIVGFEDLADKIKAGEMNFDVVIATPDAMRIVGQLGQILGPRGLMPNPKVGTVTTNVEAAVNDAKSGQVRYRTDKNGIIHCTVGKADFAPEDVLENVVALINDLKKAKPASSKGQYLKKISLSTTMGPGLPIDISSI 229          
The following BLAST results are available for this feature:
BLAST of CN188884 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL1_DESRM3.729e-3450.0050S ribosomal protein L1 OS=Desulfotomaculum reduc... [more]
RL1_DESAP3.729e-3447.4850S ribosomal protein L1 OS=Desulforudis audaxviat... [more]
RL1_CLOD63.729e-3450.3750S ribosomal protein L1 OS=Clostridium difficile ... [more]
RL1_THETN4.871e-3450.3750S ribosomal protein L1 OS=Thermoanaerobacter ten... [more]
RL1_RICAH4.871e-3450.3750S ribosomal protein L1 OS=Rickettsia akari (stra... [more]
RL1_MARMM4.871e-3451.4950S ribosomal protein L1 OS=Maricaulis maris (stra... [more]
RL1_LEGPL4.871e-3449.2850S ribosomal protein L1 OS=Legionella pneumophila... [more]
RL1_LEGPH4.871e-3449.2850S ribosomal protein L1 OS=Legionella pneumophila... [more]
RL1_LEGPC4.871e-3449.2850S ribosomal protein L1 OS=Legionella pneumophila... [more]
RL1_LEGPA4.871e-3449.2850S ribosomal protein L1 OS=Legionella pneumophila... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0006P10_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0006P10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188884 ID=CN188884; Name=CN188884; organism=Citrus sinensis; type=EST; length=765bp
TTTTTTTTTTTTTTTTTACAAGAATGGAAAAATATTCAGTAGCCATTCAA
GTAATTTTACAGAAAAAAAAATTGCGGTAATGAACCTGAGAGTGGGCGAT
AATAATAATATCTTTTTCAGTACGGAAAAAAGCCATGCTGTATGCATTTT
TCCTTTTTTTTATTTGCTACAATCTCATCCACATTGATAATCAAGATCTC
CTCACCTCACCATAATTCACTCTCCTACAACTTTTGCCAAGCAGTGGCAA
GCCCTGGCATGGGTATCAAAGAGGCTGACTGAACAGTTAAAGCTATCATT
TACAAAATTTAGTTATGTCATTTAGAAATTTGATGGAAGCTTGTAATCGA
GCATTTCTTTTATGTTTAATCGAATGGAAGGTCCCATTGATGAGCAAATG
TAAGCACTTTTCCAGTACACTCCTTTGGCCCCTTTTGGCTTGTTTGCTTC
AATTGATTTAACAGCAGCAAGGAAGTTTATGAGGAGGTCATCTTCAGAAA
AATCAGCTTTCCCAAAAGGTATGTGGACAATCCCAGTTTTATCTGCTCTA
TATTCAACTTTTCCCTTCTTGAATTCTTCTATGGCCTGAGGTATGTTAGT
TGTAACAGTACCAGCTTTAGGATTTGGCATGAGTCCCCGTGGTCCAAGAA
TTTTTCCTAGGCTGGCAACCTTAACCATCATATCTGGTGAAGCAATTAGC
TTGTCGAACTCCATGAATCCTCCTTTTATTTGTTCAATCAAGTCATCACC
ACCAACCAAATCTGC
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