CN188884

Overview
NameCN188884
Unique NameCN188884
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length765
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CN188884_ssr99 microsatellite CN188884_ssr99:99..110. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig2689 contig Csv1_Contig2689:1..766. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_BACWK (50S ribosomal protein L1 OS=Bacillus weihenstephanensis (strain KBAB4) GN=rplA PE=3 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 4.871e-34
Identity = 64/138 (46.38%), Postives = 95/138 (68.84%), Query Frame = -1
Query:  352 ADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEM 765
            A+ VG  D I +I+ G+ +FD ++A+PDMM +V  LG++LGP+GLMPNPK GTVT ++ +A+ E K GKVEYR DK G +H+P GK  F +  L+ NF     +++  KP  AKG Y K+A + S+MGP +R+++  +
Sbjct:   92 AEFVGDADYIGKIQKGWFDFDVVVATPDMMGEVGKLGRVLGPKGLMPNPKTGTVTFDVTKAVNEIKAGKVEYRVDKAGNIHVPIGKVSFEDAKLVENFKTIADTLQKAKPAAAKGTYMKNATVASTMGPGVRVDVSTL 229          
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_BACCR (50S ribosomal protein L1 OS=Bacillus cereus (strain ATCC 14579 / DSM 31) GN=rplA PE=3 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 4.871e-34
Identity = 64/138 (46.38%), Postives = 94/138 (68.12%), Query Frame = -1
Query:  352 ADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEM 765
            AD VG  D I +I+ G+ +FD ++A+PDMM +V  LG++LGP+GLMPNPK GTVT ++ +A+ E K GKVEYR DK G +H+P GK  F +  L+ NF     +++  KP  AKG Y K+  + S+MGP +R+++  +
Sbjct:   94 ADFVGDTDYIGKIQQGWFDFDVVVATPDMMGEVGKLGRVLGPKGLMPNPKTGTVTFDVTKAVNEIKAGKVEYRVDKAGNIHVPIGKVSFEDAKLVENFKTIADTLQKVKPAAAKGTYMKNVTVASTMGPGVRVDVSTL 231          
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_BACC4 (50S ribosomal protein L1 OS=Bacillus cereus (strain B4264) GN=rplA PE=3 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 4.871e-34
Identity = 64/138 (46.38%), Postives = 94/138 (68.12%), Query Frame = -1
Query:  352 ADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEM 765
            AD VG  D I +I+ G+ +FD ++A+PDMM +V  LG++LGP+GLMPNPK GTVT ++ +A+ E K GKVEYR DK G +H+P GK  F +  L+ NF     +++  KP  AKG Y K+  + S+MGP +R+++  +
Sbjct:   92 ADFVGDTDYIGKIQQGWFDFDVVVATPDMMGEVGKLGRVLGPKGLMPNPKTGTVTFDVTKAVNEIKAGKVEYRVDKAGNIHVPIGKVSFEDAKLVENFKTIADTLQKVKPAAAKGTYMKNVTVASTMGPGVRVDVSTL 229          
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_ACIC5 (50S ribosomal protein L1 OS=Acidobacterium capsulatum (strain ATCC 51196 / DSM 11244 / JCM 7670) GN=rplA PE=3 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 4.871e-34
Identity = 69/135 (51.11%), Postives = 94/135 (69.63%), Query Frame = -1
Query:  364 ADLVGGDDLIEQI-KGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLN 765
            A++VGG++L+E+I K  + +FD LIA+PDMM  V  LGK+LGPRGLMPNPK GTVT ++  A++E K GK+EYR DKT +VH+P GK  F  + L+ N +  + S+   KP  AKG Y K   + S+MGP I L+
Sbjct:   92 AEIVGGEELVEKIQKESWTDFDALIATPDMMRSVGRLGKVLGPRGLMPNPKTGTVTNDVAAAVKEIKAGKIEYRTDKTALVHVPVGKLSFPAEKLIDNAMTVITSVVRAKPSAAKGKYIKGITLSSTMGPGIPLD 226          
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_CAMLR (50S ribosomal protein L1 OS=Campylobacter lari (strain RM2100 / D67 / ATCC BAA-1060) GN=rplA PE=3 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 6.362e-34
Identity = 70/142 (49.30%), Postives = 98/142 (69.01%), Query Frame = -1
Query:  340 ADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEMLDYK 765
            AD+VG DDL+E+I+ G M FD LIA+P++M  V  +G+ILGP+GLMPNPK GTVT ++ QA+   K G+V +R DK G +H   GK  F+++ L  N  A VK+I  +KP  AKG Y K+A +  +M PS+ L+ +E+LD K
Sbjct:   92 ADIVGSDDLVEEIQKGNMNFDVLIATPNLMGLVGKVGRILGPKGLMPNPKTGTVTMDVAQAVNNAKNGQVNFRVDKQGNIHAGLGKVSFTQEQLKENMSAFVKAINKHKPAAAKGRYIKNASLSLTMSPSLSLDTQELLDTK 233          
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_BDEBA (50S ribosomal protein L1 OS=Bdellovibrio bacteriovorus GN=rplA PE=3 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 6.362e-34
Identity = 66/133 (49.62%), Postives = 93/133 (69.92%), Query Frame = -1
Query:  367 ADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRL 765
            AD VG DDL+ +I+GG+++FDK IA+PDMM  V+ + KILGPRGLMPNPK GTVT N+ +A+   KKGK+++R DK GIVH   GK    +  L  NF+  + +I   KP  +KG+Y +S  + S+MGP +++
Sbjct:   90 ADFVGADDLVAKIQGGWLDFDKCIATPDMMATVSKVAKILGPRGLMPNPKIGTVTMNVGEAVTAEKKGKLDFRVDKAGIVHAGIGKKSMGDAKLKDNFMTLLGAIVKAKPASSKGIYLRSIAVASTMGPGVKI 222          
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_BACHK (50S ribosomal protein L1 OS=Bacillus thuringiensis subsp. konkukian GN=rplA PE=3 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 6.362e-34
Identity = 64/138 (46.38%), Postives = 94/138 (68.12%), Query Frame = -1
Query:  352 ADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEM 765
            AD VG  D I +I+ G+ +FD ++A+PDMM +V  LG++LGP+GLMPNPK GTVT ++ +A+ E K GKVEYR DK G +H+P GK  F +  L+ NF     +++  KP  AKG Y K+  + S+MGP +R+++  +
Sbjct:   92 ADFVGDADYIGKIQQGWFDFDVVVATPDMMGEVGKLGRVLGPKGLMPNPKTGTVTFDVTKAVNEIKAGKVEYRVDKAGNIHVPIGKVSFEDAKLVENFRTIADTLQKVKPAAAKGTYMKNVTVASTMGPGVRVDVSTL 229          
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_BACCZ (50S ribosomal protein L1 OS=Bacillus cereus (strain ZK / E33L) GN=rplA PE=3 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 6.362e-34
Identity = 64/138 (46.38%), Postives = 94/138 (68.12%), Query Frame = -1
Query:  352 ADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEM 765
            AD VG  D I +I+ G+ +FD ++A+PDMM +V  LG++LGP+GLMPNPK GTVT ++ +A+ E K GKVEYR DK G +H+P GK  F +  L+ NF     +++  KP  AKG Y K+  + S+MGP +R+++  +
Sbjct:   92 ADFVGDADYIGKIQQGWFDFDVVVATPDMMGEVGKLGRVLGPKGLMPNPKTGTVTFDVTKAVNEIKAGKVEYRVDKAGNIHVPIGKVSFEDAKLVENFRTIADTLQKVKPAAAKGTYMKNVTVASTMGPGVRVDVSTL 229          
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_BACCQ (50S ribosomal protein L1 OS=Bacillus cereus (strain Q1) GN=rplA PE=3 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 6.362e-34
Identity = 64/138 (46.38%), Postives = 94/138 (68.12%), Query Frame = -1
Query:  352 ADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEM 765
            AD VG  D I +I+ G+ +FD ++A+PDMM +V  LG++LGP+GLMPNPK GTVT ++ +A+ E K GKVEYR DK G +H+P GK  F +  L+ NF     +++  KP  AKG Y K+  + S+MGP +R+++  +
Sbjct:   92 ADFVGDADYIGKIQQGWFDFDVVVATPDMMGEVGKLGRVLGPKGLMPNPKTGTVTFDVTKAVNEIKAGKVEYRVDKAGNIHVPIGKVSFEDAKLVENFRTIADTLQKVKPAAAKGTYMKNVTVASTMGPGVRVDVSTL 229          
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_BACC7 (50S ribosomal protein L1 OS=Bacillus cereus (strain AH187) GN=rplA PE=3 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 6.362e-34
Identity = 64/138 (46.38%), Postives = 94/138 (68.12%), Query Frame = -1
Query:  352 ADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEM 765
            AD VG  D I +I+ G+ +FD ++A+PDMM +V  LG++LGP+GLMPNPK GTVT ++ +A+ E K GKVEYR DK G +H+P GK  F +  L+ NF     +++  KP  AKG Y K+  + S+MGP +R+++  +
Sbjct:   92 ADFVGDADYIGKIQQGWFDFDVVVATPDMMGEVGKLGRVLGPKGLMPNPKTGTVTFDVTKAVNEIKAGKVEYRVDKAGNIHVPIGKVSFEDAKLVENFRTIADTLQKVKPAAAKGTYMKNVTVASTMGPGVRVDVSTL 229          
The following BLAST results are available for this feature:
BLAST of CN188884 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL1_BACWK4.871e-3446.3850S ribosomal protein L1 OS=Bacillus weihenstephan... [more]
RL1_BACCR4.871e-3446.3850S ribosomal protein L1 OS=Bacillus cereus (strai... [more]
RL1_BACC44.871e-3446.3850S ribosomal protein L1 OS=Bacillus cereus (strai... [more]
RL1_ACIC54.871e-3451.1150S ribosomal protein L1 OS=Acidobacterium capsula... [more]
RL1_CAMLR6.362e-3449.3050S ribosomal protein L1 OS=Campylobacter lari (st... [more]
RL1_BDEBA6.362e-3449.6250S ribosomal protein L1 OS=Bdellovibrio bacteriov... [more]
RL1_BACHK6.362e-3446.3850S ribosomal protein L1 OS=Bacillus thuringiensis... [more]
RL1_BACCZ6.362e-3446.3850S ribosomal protein L1 OS=Bacillus cereus (strai... [more]
RL1_BACCQ6.362e-3446.3850S ribosomal protein L1 OS=Bacillus cereus (strai... [more]
RL1_BACC76.362e-3446.3850S ribosomal protein L1 OS=Bacillus cereus (strai... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0006P10_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0006P10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188884 ID=CN188884; Name=CN188884; organism=Citrus sinensis; type=EST; length=765bp
TTTTTTTTTTTTTTTTTACAAGAATGGAAAAATATTCAGTAGCCATTCAA
GTAATTTTACAGAAAAAAAAATTGCGGTAATGAACCTGAGAGTGGGCGAT
AATAATAATATCTTTTTCAGTACGGAAAAAAGCCATGCTGTATGCATTTT
TCCTTTTTTTTATTTGCTACAATCTCATCCACATTGATAATCAAGATCTC
CTCACCTCACCATAATTCACTCTCCTACAACTTTTGCCAAGCAGTGGCAA
GCCCTGGCATGGGTATCAAAGAGGCTGACTGAACAGTTAAAGCTATCATT
TACAAAATTTAGTTATGTCATTTAGAAATTTGATGGAAGCTTGTAATCGA
GCATTTCTTTTATGTTTAATCGAATGGAAGGTCCCATTGATGAGCAAATG
TAAGCACTTTTCCAGTACACTCCTTTGGCCCCTTTTGGCTTGTTTGCTTC
AATTGATTTAACAGCAGCAAGGAAGTTTATGAGGAGGTCATCTTCAGAAA
AATCAGCTTTCCCAAAAGGTATGTGGACAATCCCAGTTTTATCTGCTCTA
TATTCAACTTTTCCCTTCTTGAATTCTTCTATGGCCTGAGGTATGTTAGT
TGTAACAGTACCAGCTTTAGGATTTGGCATGAGTCCCCGTGGTCCAAGAA
TTTTTCCTAGGCTGGCAACCTTAACCATCATATCTGGTGAAGCAATTAGC
TTGTCGAACTCCATGAATCCTCCTTTTATTTGTTCAATCAAGTCATCACC
ACCAACCAAATCTGC
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