CN188884

Overview
NameCN188884
Unique NameCN188884
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length765
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CN188884_ssr99 microsatellite CN188884_ssr99:99..110. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig2689 contig Csv1_Contig2689:1..766. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_PERMH (50S ribosomal protein L1 OS=Persephonella marina (strain DSM 14350 / EX-H1) GN=rplA PE=3 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 8.308e-34
Identity = 66/140 (47.14%), Postives = 102/140 (72.86%), Query Frame = -1
Query:  349 ADLVGGDDLIEQIKG-GFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEML 765
            AD VGG+D+I +I    +++FD +IA+PDMM KVA LG++LGPRGLMPNPK GTVT ++ +A+ E KKG+VE++ DKTG +H+P GK  F  + L+ N L  +++++  +P G KG Y K+  + ++M PS++L++  +L
Sbjct:   95 ADYVGGEDMINKILNENWLDFDVVIATPDMMPKVAKLGRVLGPRGLMPNPKVGTVTQDVKKAVTEAKKGRVEFKVDKTGNLHVPIGKISFDNNKLVENALEVIETVQKLRPSGLKGQYIKNMVMKTTMSPSVKLDVLSIL 234          
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_LACAC (50S ribosomal protein L1 OS=Lactobacillus acidophilus GN=rplA PE=3 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 8.308e-34
Identity = 67/134 (50.00%), Postives = 94/134 (70.15%), Query Frame = -1
Query:  364 ADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLN 765
            AD VG DDL+E+I+GG+++FD ++A+P MM KV  LG++LGP+GLMPNPK GTVT +I +A++  K G+VEYR D+   +H P GK  F+ED L+ NF A    I   +P  AKG Y KS  + ++ GP I+L+
Sbjct:   92 ADFVGSDDLVEKIQGGWLDFDVVVATPMMMAKVGRLGRVLGPKGLMPNPKTGTVTMDIEKAVKNVKAGQVEYRVDRQAAIHTPIGKVSFTEDQLVENFDALRDVILRARPASAKGQYIKSVAVSATFGPGIKLD 225          
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_JANSC (50S ribosomal protein L1 OS=Jannaschia sp. (strain CCS1) GN=rplA PE=3 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 8.308e-34
Identity = 66/136 (48.53%), Postives = 97/136 (71.32%), Query Frame = -1
Query:  358 ADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIK 765
            AD+VG +DL+E ++GG +EFD+ IA+PDMM  V  LGK+LGPR LMPNPK GTVT ++ +A+E  K G+V+++A+K G+VH   GKA F+E  L+ N  A V ++   KP G+KG Y +   + S+MGP + L+++
Sbjct:   92 ADIVGAEDLMETVQGGTIEFDRCIATPDMMPIVGRLGKVLGPRNLMPNPKIGTVTMDVKEAVEAAKGGQVQFKAEKAGVVHAGVGKASFTEAQLVENVRAFVDAVSKAKPSGSKGTYMQKINLTSTMGPGVSLSVE 227          
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_ACIC1 (50S ribosomal protein L1 OS=Acidothermus cellulolyticus (strain ATCC 43068 / 11B) GN=rplA PE=3 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 8.308e-34
Identity = 66/131 (50.38%), Postives = 92/131 (70.23%), Query Frame = -1
Query:  373 ADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSI 765
            AD VG D+LIEQ+  GF++FD ++A+PD+M KV  LG+ILGPRGLMPNPK GTVT ++ +A+ + K GK+E+R D+   +H+  GK DF+E  L+ N+ AA+  +   KP  AKG Y K   I ++MGP I
Sbjct:   91 ADYVGADELIEQVANGFLDFDAVVATPDLMGKVGRLGRILGPRGLMPNPKTGTVTNDVAKAVADIKSGKIEFRVDRQANLHLVIGKTDFTEQQLVENYAAALDEVLRLKPPTAKGRYLKKVTISTTMGPGI 221          
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_STAHJ (50S ribosomal protein L1 OS=Staphylococcus haemolyticus (strain JCSC1435) GN=rplA PE=3 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 1.085e-33
Identity = 64/134 (47.76%), Postives = 95/134 (70.90%), Query Frame = -1
Query:  364 ADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLN 765
            AD VG  + +++I+ G+ +FD ++A+PDMM +V  LG++LGP+GLMPNPK GTVT ++ +A+EE K GKVEYRA+K GIVH   GK  FS++ L+ NF      +   KP  AKG Y+KS  + ++MGP ++++
Sbjct:   92 ADYVGESEYVQKIQQGWFDFDVVVATPDMMGEVGKLGRVLGPKGLMPNPKTGTVTMDVKKAVEEIKAGKVEYRAEKAGIVHASIGKVSFSDEKLVENFKTLQDVLAKAKPSSAKGTYFKSVAVTTTMGPGVKID 225          
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_RICFE (50S ribosomal protein L1 OS=Rickettsia felis GN=rplA PE=3 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 1.085e-33
Identity = 68/135 (50.37%), Postives = 96/135 (71.11%), Query Frame = -1
Query:  361 ADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNI 765
            ADLVG  ++I++IK G + FD  IA+PDMM  + S+ +ILGP+GLMPNPK GTVT +I  AI+  K G+VEYRA+K GI+H   GK  FS+ DLL N  A ++++   KP G KG Y K+ Y+ S+MG S+++++
Sbjct:  101 ADLVGSTNIIDEIKAGKINFDVCIATPDMMAVIGSVARILGPKGLMPNPKLGTVTLDIKNAIKNAKSGQVEYRAEKAGIIHAGLGKLSFSDQDLLKNLNAFIEAVIKAKPAGLKGSYLKAMYLSSTMGASVQIDL 235          
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_LACGA (50S ribosomal protein L1 OS=Lactobacillus gasseri (strain ATCC 33323 / DSM 20243) GN=rplA PE=3 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 1.085e-33
Identity = 69/134 (51.49%), Postives = 92/134 (68.66%), Query Frame = -1
Query:  364 ADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLN 765
            AD VG DDL+E+++ G+++FD +IA+P MM KV  LG+ILGP+GLMPNPK GTVT ++ +A+E  K G+VEYR DK G++H P GKA F  D L  NF A    I   +P  AKG Y KS  + ++ GP I L+
Sbjct:   92 ADEVGSDDLVEKVQNGYLDFDVVIATPMMMAKVGRLGRILGPKGLMPNPKTGTVTMDVAKAVENQKAGQVEYRVDKQGLIHAPIGKASFDADKLAQNFDALRDVILRARPASAKGQYIKSVAVSATFGPGIHLD 225          
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_COXBU (50S ribosomal protein L1 OS=Coxiella burnetii GN=rplA PE=3 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 1.085e-33
Identity = 69/134 (51.49%), Postives = 93/134 (69.40%), Query Frame = -1
Query:  364 ADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLN 765
            AD+VG DDL E+I+GG ++FD +IA+P+ M  V  LG++LGPRGLMPNPK GTVTT++  A++  K+G+V YR DK GI+H   GK +F E  L  NFLA +  I+  KP  AKG Y K   + S+MGP I ++
Sbjct:   93 ADIVGLDDLAERIQGGDIDFDVVIATPETMRVVGKLGQVLGPRGLMPNPKVGTVTTDVASAVKNAKQGQVRYRTDKNGIIHCTIGKVNFEEKALEENFLALLNDIKKAKPSAAKGTYLKKLTLSSTMGPGIAID 226          
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_COXBR (50S ribosomal protein L1 OS=Coxiella burnetii (strain RSA 331 / Henzerling II) GN=rplA PE=3 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 1.085e-33
Identity = 69/134 (51.49%), Postives = 93/134 (69.40%), Query Frame = -1
Query:  364 ADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLN 765
            AD+VG DDL E+I+GG ++FD +IA+P+ M  V  LG++LGPRGLMPNPK GTVTT++  A++  K+G+V YR DK GI+H   GK +F E  L  NFLA +  I+  KP  AKG Y K   + S+MGP I ++
Sbjct:   93 ADIVGLDDLAERIQGGDIDFDVVIATPETMRVVGKLGQVLGPRGLMPNPKVGTVTTDVASAVKNAKQGQVRYRTDKNGIIHCTIGKVNFEEKALEENFLALLNDIKKAKPSAAKGTYLKKLTLSSTMGPGIAID 226          
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_COXBN (50S ribosomal protein L1 OS=Coxiella burnetii (strain Dugway 5J108-111) GN=rplA PE=3 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 1.085e-33
Identity = 69/134 (51.49%), Postives = 93/134 (69.40%), Query Frame = -1
Query:  364 ADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLN 765
            AD+VG DDL E+I+GG ++FD +IA+P+ M  V  LG++LGPRGLMPNPK GTVTT++  A++  K+G+V YR DK GI+H   GK +F E  L  NFLA +  I+  KP  AKG Y K   + S+MGP I ++
Sbjct:   93 ADIVGLDDLAERIQGGDIDFDVVIATPETMRVVGKLGQVLGPRGLMPNPKVGTVTTDVASAVKNAKQGQVRYRTDKNGIIHCTIGKVNFEEKALEENFLALLNDIKKAKPSAAKGTYLKKLTLSSTMGPGIAID 226          
The following BLAST results are available for this feature:
BLAST of CN188884 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL1_PERMH8.308e-3447.1450S ribosomal protein L1 OS=Persephonella marina (... [more]
RL1_LACAC8.308e-3450.0050S ribosomal protein L1 OS=Lactobacillus acidophi... [more]
RL1_JANSC8.308e-3448.5350S ribosomal protein L1 OS=Jannaschia sp. (strain... [more]
RL1_ACIC18.308e-3450.3850S ribosomal protein L1 OS=Acidothermus celluloly... [more]
RL1_STAHJ1.085e-3347.7650S ribosomal protein L1 OS=Staphylococcus haemoly... [more]
RL1_RICFE1.085e-3350.3750S ribosomal protein L1 OS=Rickettsia felis GN=rp... [more]
RL1_LACGA1.085e-3351.4950S ribosomal protein L1 OS=Lactobacillus gasseri ... [more]
RL1_COXBU1.085e-3351.4950S ribosomal protein L1 OS=Coxiella burnetii GN=r... [more]
RL1_COXBR1.085e-3351.4950S ribosomal protein L1 OS=Coxiella burnetii (str... [more]
RL1_COXBN1.085e-3351.4950S ribosomal protein L1 OS=Coxiella burnetii (str... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0006P10_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0006P10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188884 ID=CN188884; Name=CN188884; organism=Citrus sinensis; type=EST; length=765bp
TTTTTTTTTTTTTTTTTACAAGAATGGAAAAATATTCAGTAGCCATTCAA
GTAATTTTACAGAAAAAAAAATTGCGGTAATGAACCTGAGAGTGGGCGAT
AATAATAATATCTTTTTCAGTACGGAAAAAAGCCATGCTGTATGCATTTT
TCCTTTTTTTTATTTGCTACAATCTCATCCACATTGATAATCAAGATCTC
CTCACCTCACCATAATTCACTCTCCTACAACTTTTGCCAAGCAGTGGCAA
GCCCTGGCATGGGTATCAAAGAGGCTGACTGAACAGTTAAAGCTATCATT
TACAAAATTTAGTTATGTCATTTAGAAATTTGATGGAAGCTTGTAATCGA
GCATTTCTTTTATGTTTAATCGAATGGAAGGTCCCATTGATGAGCAAATG
TAAGCACTTTTCCAGTACACTCCTTTGGCCCCTTTTGGCTTGTTTGCTTC
AATTGATTTAACAGCAGCAAGGAAGTTTATGAGGAGGTCATCTTCAGAAA
AATCAGCTTTCCCAAAAGGTATGTGGACAATCCCAGTTTTATCTGCTCTA
TATTCAACTTTTCCCTTCTTGAATTCTTCTATGGCCTGAGGTATGTTAGT
TGTAACAGTACCAGCTTTAGGATTTGGCATGAGTCCCCGTGGTCCAAGAA
TTTTTCCTAGGCTGGCAACCTTAACCATCATATCTGGTGAAGCAATTAGC
TTGTCGAACTCCATGAATCCTCCTTTTATTTGTTCAATCAAGTCATCACC
ACCAACCAAATCTGC
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