CN188884
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_PERMH (50S ribosomal protein L1 OS=Persephonella marina (strain DSM 14350 / EX-H1) GN=rplA PE=3 SV=1) HSP 1 Score: 144.05 bits (362), Expect = 8.308e-34 Identity = 66/140 (47.14%), Postives = 102/140 (72.86%), Query Frame = -1 Query: 349 ADLVGGDDLIEQIKG-GFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEML 765 AD VGG+D+I +I +++FD +IA+PDMM KVA LG++LGPRGLMPNPK GTVT ++ +A+ E KKG+VE++ DKTG +H+P GK F + L+ N L +++++ +P G KG Y K+ + ++M PS++L++ +L Sbjct: 95 ADYVGGEDMINKILNENWLDFDVVIATPDMMPKVAKLGRVLGPRGLMPNPKVGTVTQDVKKAVTEAKKGRVEFKVDKTGNLHVPIGKISFDNNKLVENALEVIETVQKLRPSGLKGQYIKNMVMKTTMSPSVKLDVLSIL 234
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_LACAC (50S ribosomal protein L1 OS=Lactobacillus acidophilus GN=rplA PE=3 SV=1) HSP 1 Score: 144.05 bits (362), Expect = 8.308e-34 Identity = 67/134 (50.00%), Postives = 94/134 (70.15%), Query Frame = -1 Query: 364 ADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLN 765 AD VG DDL+E+I+GG+++FD ++A+P MM KV LG++LGP+GLMPNPK GTVT +I +A++ K G+VEYR D+ +H P GK F+ED L+ NF A I +P AKG Y KS + ++ GP I+L+ Sbjct: 92 ADFVGSDDLVEKIQGGWLDFDVVVATPMMMAKVGRLGRVLGPKGLMPNPKTGTVTMDIEKAVKNVKAGQVEYRVDRQAAIHTPIGKVSFTEDQLVENFDALRDVILRARPASAKGQYIKSVAVSATFGPGIKLD 225
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_JANSC (50S ribosomal protein L1 OS=Jannaschia sp. (strain CCS1) GN=rplA PE=3 SV=1) HSP 1 Score: 144.05 bits (362), Expect = 8.308e-34 Identity = 66/136 (48.53%), Postives = 97/136 (71.32%), Query Frame = -1 Query: 358 ADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIK 765 AD+VG +DL+E ++GG +EFD+ IA+PDMM V LGK+LGPR LMPNPK GTVT ++ +A+E K G+V+++A+K G+VH GKA F+E L+ N A V ++ KP G+KG Y + + S+MGP + L+++ Sbjct: 92 ADIVGAEDLMETVQGGTIEFDRCIATPDMMPIVGRLGKVLGPRNLMPNPKIGTVTMDVKEAVEAAKGGQVQFKAEKAGVVHAGVGKASFTEAQLVENVRAFVDAVSKAKPSGSKGTYMQKINLTSTMGPGVSLSVE 227
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_ACIC1 (50S ribosomal protein L1 OS=Acidothermus cellulolyticus (strain ATCC 43068 / 11B) GN=rplA PE=3 SV=1) HSP 1 Score: 144.05 bits (362), Expect = 8.308e-34 Identity = 66/131 (50.38%), Postives = 92/131 (70.23%), Query Frame = -1 Query: 373 ADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSI 765 AD VG D+LIEQ+ GF++FD ++A+PD+M KV LG+ILGPRGLMPNPK GTVT ++ +A+ + K GK+E+R D+ +H+ GK DF+E L+ N+ AA+ + KP AKG Y K I ++MGP I Sbjct: 91 ADYVGADELIEQVANGFLDFDAVVATPDLMGKVGRLGRILGPRGLMPNPKTGTVTNDVAKAVADIKSGKIEFRVDRQANLHLVIGKTDFTEQQLVENYAAALDEVLRLKPPTAKGRYLKKVTISTTMGPGI 221
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_STAHJ (50S ribosomal protein L1 OS=Staphylococcus haemolyticus (strain JCSC1435) GN=rplA PE=3 SV=1) HSP 1 Score: 143.665 bits (361), Expect = 1.085e-33 Identity = 64/134 (47.76%), Postives = 95/134 (70.90%), Query Frame = -1 Query: 364 ADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLN 765 AD VG + +++I+ G+ +FD ++A+PDMM +V LG++LGP+GLMPNPK GTVT ++ +A+EE K GKVEYRA+K GIVH GK FS++ L+ NF + KP AKG Y+KS + ++MGP ++++ Sbjct: 92 ADYVGESEYVQKIQQGWFDFDVVVATPDMMGEVGKLGRVLGPKGLMPNPKTGTVTMDVKKAVEEIKAGKVEYRAEKAGIVHASIGKVSFSDEKLVENFKTLQDVLAKAKPSSAKGTYFKSVAVTTTMGPGVKID 225
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_RICFE (50S ribosomal protein L1 OS=Rickettsia felis GN=rplA PE=3 SV=1) HSP 1 Score: 143.665 bits (361), Expect = 1.085e-33 Identity = 68/135 (50.37%), Postives = 96/135 (71.11%), Query Frame = -1 Query: 361 ADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNI 765 ADLVG ++I++IK G + FD IA+PDMM + S+ +ILGP+GLMPNPK GTVT +I AI+ K G+VEYRA+K GI+H GK FS+ DLL N A ++++ KP G KG Y K+ Y+ S+MG S+++++ Sbjct: 101 ADLVGSTNIIDEIKAGKINFDVCIATPDMMAVIGSVARILGPKGLMPNPKLGTVTLDIKNAIKNAKSGQVEYRAEKAGIIHAGLGKLSFSDQDLLKNLNAFIEAVIKAKPAGLKGSYLKAMYLSSTMGASVQIDL 235
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_LACGA (50S ribosomal protein L1 OS=Lactobacillus gasseri (strain ATCC 33323 / DSM 20243) GN=rplA PE=3 SV=1) HSP 1 Score: 143.665 bits (361), Expect = 1.085e-33 Identity = 69/134 (51.49%), Postives = 92/134 (68.66%), Query Frame = -1 Query: 364 ADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLN 765 AD VG DDL+E+++ G+++FD +IA+P MM KV LG+ILGP+GLMPNPK GTVT ++ +A+E K G+VEYR DK G++H P GKA F D L NF A I +P AKG Y KS + ++ GP I L+ Sbjct: 92 ADEVGSDDLVEKVQNGYLDFDVVIATPMMMAKVGRLGRILGPKGLMPNPKTGTVTMDVAKAVENQKAGQVEYRVDKQGLIHAPIGKASFDADKLAQNFDALRDVILRARPASAKGQYIKSVAVSATFGPGIHLD 225
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_COXBU (50S ribosomal protein L1 OS=Coxiella burnetii GN=rplA PE=3 SV=1) HSP 1 Score: 143.665 bits (361), Expect = 1.085e-33 Identity = 69/134 (51.49%), Postives = 93/134 (69.40%), Query Frame = -1 Query: 364 ADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLN 765 AD+VG DDL E+I+GG ++FD +IA+P+ M V LG++LGPRGLMPNPK GTVTT++ A++ K+G+V YR DK GI+H GK +F E L NFLA + I+ KP AKG Y K + S+MGP I ++ Sbjct: 93 ADIVGLDDLAERIQGGDIDFDVVIATPETMRVVGKLGQVLGPRGLMPNPKVGTVTTDVASAVKNAKQGQVRYRTDKNGIIHCTIGKVNFEEKALEENFLALLNDIKKAKPSAAKGTYLKKLTLSSTMGPGIAID 226
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_COXBR (50S ribosomal protein L1 OS=Coxiella burnetii (strain RSA 331 / Henzerling II) GN=rplA PE=3 SV=1) HSP 1 Score: 143.665 bits (361), Expect = 1.085e-33 Identity = 69/134 (51.49%), Postives = 93/134 (69.40%), Query Frame = -1 Query: 364 ADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLN 765 AD+VG DDL E+I+GG ++FD +IA+P+ M V LG++LGPRGLMPNPK GTVTT++ A++ K+G+V YR DK GI+H GK +F E L NFLA + I+ KP AKG Y K + S+MGP I ++ Sbjct: 93 ADIVGLDDLAERIQGGDIDFDVVIATPETMRVVGKLGQVLGPRGLMPNPKVGTVTTDVASAVKNAKQGQVRYRTDKNGIIHCTIGKVNFEEKALEENFLALLNDIKKAKPSAAKGTYLKKLTLSSTMGPGIAID 226
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_COXBN (50S ribosomal protein L1 OS=Coxiella burnetii (strain Dugway 5J108-111) GN=rplA PE=3 SV=1) HSP 1 Score: 143.665 bits (361), Expect = 1.085e-33 Identity = 69/134 (51.49%), Postives = 93/134 (69.40%), Query Frame = -1 Query: 364 ADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLN 765 AD+VG DDL E+I+GG ++FD +IA+P+ M V LG++LGPRGLMPNPK GTVTT++ A++ K+G+V YR DK GI+H GK +F E L NFLA + I+ KP AKG Y K + S+MGP I ++ Sbjct: 93 ADIVGLDDLAERIQGGDIDFDVVIATPETMRVVGKLGQVLGPRGLMPNPKVGTVTTDVASAVKNAKQGQVRYRTDKNGIIHCTIGKVNFEEKALEENFLALLNDIKKAKPSAAKGTYLKKLTLSSTMGPGIAID 226 The following BLAST results are available for this feature:
BLAST of CN188884 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >CN188884 ID=CN188884; Name=CN188884; organism=Citrus sinensis; type=EST; length=765bpback to top |