CN188884

Overview
NameCN188884
Unique NameCN188884
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length765
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_STACT (50S ribosomal protein L1 OS=Staphylococcus carnosus (strain TM300) GN=rplA PE=3 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 4.123e-33
Identity = 65/134 (48.51%), Postives = 93/134 (69.40%), Query Frame = -1
Query:  364 ADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLN 765
            AD VG  +   +I+ G+ +FD ++A+PDMM +V  LG++LGP+GLMPNPK GTVT ++ +A+EE K GKVEYRA+K GI+H   GK  FS +DL+ NF      I   KP  AKG Y+KS  + ++MGP ++++
Sbjct:   92 ADYVGESEYATKIQQGWFDFDVVVATPDMMGEVGKLGRVLGPKGLMPNPKTGTVTMDVKKAVEEIKAGKVEYRAEKAGIIHASIGKVSFSTEDLVENFNTLQDVIAKAKPASAKGTYFKSVAVTTTMGPGVKVD 225          
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_RICCK (50S ribosomal protein L1 OS=Rickettsia canadensis (strain McKiel) GN=rplA PE=3 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 4.123e-33
Identity = 67/135 (49.63%), Postives = 94/135 (69.63%), Query Frame = -1
Query:  361 ADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNI 765
            ADLVG   +I++IK G + FD  IA+PDMM  + S+ +ILGP+GLMPNPK GTVT +I  AI+  K G+VEYRA+K GI+H   GK  FS+ DLL N    ++++   KP G KG Y K+ Y+ S+MG S+++++
Sbjct:  101 ADLVGSTSIIDEIKAGKINFDVCIATPDMMAAIGSVARILGPKGLMPNPKLGTVTLDIKNAIKNAKSGQVEYRAEKAGIIHAGLGKLSFSDQDLLQNLNEFIEAVIKAKPAGLKGSYLKAMYLSSTMGASVQIDL 235          
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_PELTS (50S ribosomal protein L1 OS=Pelotomaculum thermopropionicum (strain DSM 13744 / JCM 10971 / SI) GN=rplA PE=3 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 4.123e-33
Identity = 68/139 (48.92%), Postives = 96/139 (69.06%), Query Frame = -1
Query:  352 ADLVGGDDLIEQIKG-GFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEM 765
            AD VG +D++ +I+  G++ FD  IA+PDMM  V  LG+ILGPRGLMPNPK GTVT +I +A++E K GK+EYR DK GI+H P GK  FS + L+ N    ++++   KP  AKG Y K   + S+MGP I++N +++
Sbjct:   92 ADFVGAEDMVARIQQEGWLGFDVAIATPDMMGMVGKLGRILGPRGLMPNPKTGTVTFDIARAVKEVKAGKIEYRVDKAGIIHAPIGKVSFSTEKLVENLRTLIEALIRAKPAAAKGQYLKGISVSSTMGPGIKVNTQKV 230          
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_KOSOT (50S ribosomal protein L1 OS=Kosmotoga olearia (strain TBF 19.5.1) GN=rplA PE=3 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 4.123e-33
Identity = 66/140 (47.14%), Postives = 99/140 (70.71%), Query Frame = -1
Query:  346 ADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEMLD 765
            AD VG D+LI+QI+ G+ +FD  IA+PDMM ++  LG+ILGPRGLMP+PKAGTVTT++ +A++ FK G+VE + DKTG +H P GK  F  + L  N ++A++ I   KP  AKG +     +  +MGP I+L+ +++++
Sbjct:   92 ADFVGSDELIQQIQKGWTDFDVAIATPDMMREIGRLGRILGPRGLMPSPKAGTVTTDVAEAVKAFKAGRVEIKNDKTGNLHFPIGKKSFDSEKLKENLVSALEQISKMKPAAAKGRFIVKVVVAPTMGPGIKLDHQKVVE 231          
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_GEOTN (50S ribosomal protein L1 OS=Geobacillus thermodenitrificans (strain NG80-2) GN=rplA PE=3 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 4.123e-33
Identity = 66/134 (49.25%), Postives = 92/134 (68.66%), Query Frame = -1
Query:  364 ADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLN 765
            AD VG  + I +I+ G+ +FD ++A+PDMM +V  LG+ILGP+GLMPNPK GTVT ++ +A++E K GKVEYR DK G +H+P GK  F  + L  NF    ++I   KP  AKG Y K+  I S+MGP I+++
Sbjct:   92 ADYVGDTEYINKIQQGWFDFDVVVATPDMMGEVGKLGRILGPKGLMPNPKTGTVTFDVTKAVQEIKAGKVEYRVDKAGNIHVPIGKVSFDNEKLAENFATIYEAILKAKPAAAKGTYVKNVTITSTMGPGIKVD 225          
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_GEOSW (50S ribosomal protein L1 OS=Geobacillus sp. (strain WCH70) GN=rplA PE=3 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 4.123e-33
Identity = 66/134 (49.25%), Postives = 92/134 (68.66%), Query Frame = -1
Query:  364 ADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLN 765
            AD VG  + I +I+ G+ +FD ++A+PDMM +V  LG+ILGP+GLMPNPK GTVT ++ +A++E K GKVEYR DK G +H+P GK  F  + L  NF    ++I   KP  AKG Y K+  I S+MGP I+++
Sbjct:   92 ADYVGDTEYINKIQQGWFDFDVVVATPDMMGEVGKLGRILGPKGLMPNPKTGTVTFDVAKAVQEIKAGKVEYRVDKAGNIHVPIGKVSFDNEKLAENFTTIYEAILKAKPAAAKGTYVKNVTITSTMGPGIKVD 225          
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_THICR (50S ribosomal protein L1 OS=Thiomicrospira crunogena (strain XCL-2) GN=rplA PE=3 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 5.385e-33
Identity = 70/134 (52.24%), Postives = 89/134 (66.42%), Query Frame = -1
Query:  364 ADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLN 765
            A+ VG DDL  ++KGG M+FD +IASPD M  V  LG++LGPRGLMPNPK GTVT ++  AI+  K G+V +RADK GIVH   GK DF+ + L  N  A ++ +   KP  AKG Y K   I S+MGP I L+
Sbjct:   94 AEFVGMDDLAAEVKGGMMDFDVVIASPDAMRVVGMLGQVLGPRGLMPNPKTGTVTPDVVTAIKNAKSGQVRFRADKAGIVHASIGKVDFAPEKLKENLNALIEDLNKAKPAAAKGTYMKKVSISSTMGPGIVLD 227          
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_RICTY (50S ribosomal protein L1 OS=Rickettsia typhi GN=rplA PE=3 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 5.385e-33
Identity = 68/135 (50.37%), Postives = 96/135 (71.11%), Query Frame = -1
Query:  361 ADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNI 765
            ADLVG  ++I++IK G + FD  IA+PDMM  ++S+ +ILGP+GLMPNPK GTVT +I  AI+  K G+VEYRA+K GI+H   GK  FS+ DLL N  A + ++   KP G KG Y K+ Y+ S+MG S+++++
Sbjct:  100 ADLVGSINIIDEIKSGQINFDVCIATPDMMSMISSVARILGPKGLMPNPKLGTVTLDIKNAIKNAKSGQVEYRAEKAGIIHAGLGKLSFSDQDLLKNLNAFIGAVIKAKPVGLKGSYLKAIYLSSTMGASVQIDL 234          
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_PARUW (50S ribosomal protein L1 OS=Protochlamydia amoebophila (strain UWE25) GN=rplA PE=3 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 5.385e-33
Identity = 65/137 (47.45%), Postives = 98/137 (71.53%), Query Frame = -1
Query:  355 ADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKE 765
            AD  G D+L+E++ GG+ +FD ++A+PDMM +V  LGK+LGPRGLMP PKAGTVTT+I +AI+E K GK+E++ D+ G+++   GK  F  + L  N  A + +I+  KP  AKG Y +S  I S+MGP ++++++E
Sbjct:   92 ADYAGHDELLEKVNGGWTDFDAVVATPDMMREVGKLGKVLGPRGLMPTPKAGTVTTDIAKAIQELKAGKIEFKLDRHGVINNGVGKVSFESNKLEENIRAFLIAIQRAKPASAKGHYMRSLAISSTMGPGLKIDLRE 228          
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_NAUPA (50S ribosomal protein L1 OS=Nautilia profundicola (strain ATCC BAA-1463 / DSM 18972 / AmH) GN=rplA PE=3 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 5.385e-33
Identity = 65/142 (45.77%), Postives = 99/142 (69.72%), Query Frame = -1
Query:  340 ADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEMLDYK 765
            AD+VG ++++E I+ G ++FD LIA+PDMM K+   GKILGP+GLMPNPK GTVT ++ QA++  K G+V +R DK G +H+  GKA F  + +  N +A ++ I   KP  AKG Y ++A +  +M PS++L++ E+ +YK
Sbjct:   92 ADIVGEEEVLEMIQNGNLDFDILIATPDMMGKLGRFGKILGPKGLMPNPKTGTVTMDVAQAVKNAKAGQVNFRVDKKGNMHVGIGKASFDAEKIYENAVAFIEKINKMKPASAKGRYIQNAALSLTMSPSVKLDVNELTEYK 233          
The following BLAST results are available for this feature:
BLAST of CN188884 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL1_STACT4.123e-3348.5150S ribosomal protein L1 OS=Staphylococcus carnosu... [more]
RL1_RICCK4.123e-3349.6350S ribosomal protein L1 OS=Rickettsia canadensis ... [more]
RL1_PELTS4.123e-3348.9250S ribosomal protein L1 OS=Pelotomaculum thermopr... [more]
RL1_KOSOT4.123e-3347.1450S ribosomal protein L1 OS=Kosmotoga olearia (str... [more]
RL1_GEOTN4.123e-3349.2550S ribosomal protein L1 OS=Geobacillus thermodeni... [more]
RL1_GEOSW4.123e-3349.2550S ribosomal protein L1 OS=Geobacillus sp. (strai... [more]
RL1_THICR5.385e-3352.2450S ribosomal protein L1 OS=Thiomicrospira crunoge... [more]
RL1_RICTY5.385e-3350.3750S ribosomal protein L1 OS=Rickettsia typhi GN=rp... [more]
RL1_PARUW5.385e-3347.4550S ribosomal protein L1 OS=Protochlamydia amoebop... [more]
RL1_NAUPA5.385e-3345.7750S ribosomal protein L1 OS=Nautilia profundicola ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0006P10_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0006P10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188884 ID=CN188884; Name=CN188884; organism=Citrus sinensis; type=EST; length=765bp
TTTTTTTTTTTTTTTTTACAAGAATGGAAAAATATTCAGTAGCCATTCAA
GTAATTTTACAGAAAAAAAAATTGCGGTAATGAACCTGAGAGTGGGCGAT
AATAATAATATCTTTTTCAGTACGGAAAAAAGCCATGCTGTATGCATTTT
TCCTTTTTTTTATTTGCTACAATCTCATCCACATTGATAATCAAGATCTC
CTCACCTCACCATAATTCACTCTCCTACAACTTTTGCCAAGCAGTGGCAA
GCCCTGGCATGGGTATCAAAGAGGCTGACTGAACAGTTAAAGCTATCATT
TACAAAATTTAGTTATGTCATTTAGAAATTTGATGGAAGCTTGTAATCGA
GCATTTCTTTTATGTTTAATCGAATGGAAGGTCCCATTGATGAGCAAATG
TAAGCACTTTTCCAGTACACTCCTTTGGCCCCTTTTGGCTTGTTTGCTTC
AATTGATTTAACAGCAGCAAGGAAGTTTATGAGGAGGTCATCTTCAGAAA
AATCAGCTTTCCCAAAAGGTATGTGGACAATCCCAGTTTTATCTGCTCTA
TATTCAACTTTTCCCTTCTTGAATTCTTCTATGGCCTGAGGTATGTTAGT
TGTAACAGTACCAGCTTTAGGATTTGGCATGAGTCCCCGTGGTCCAAGAA
TTTTTCCTAGGCTGGCAACCTTAACCATCATATCTGGTGAAGCAATTAGC
TTGTCGAACTCCATGAATCCTCCTTTTATTTGTTCAATCAAGTCATCACC
ACCAACCAAATCTGC
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