CN188884
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_STACT (50S ribosomal protein L1 OS=Staphylococcus carnosus (strain TM300) GN=rplA PE=3 SV=1) HSP 1 Score: 141.739 bits (356), Expect = 4.123e-33 Identity = 65/134 (48.51%), Postives = 93/134 (69.40%), Query Frame = -1 Query: 364 ADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLN 765 AD VG + +I+ G+ +FD ++A+PDMM +V LG++LGP+GLMPNPK GTVT ++ +A+EE K GKVEYRA+K GI+H GK FS +DL+ NF I KP AKG Y+KS + ++MGP ++++ Sbjct: 92 ADYVGESEYATKIQQGWFDFDVVVATPDMMGEVGKLGRVLGPKGLMPNPKTGTVTMDVKKAVEEIKAGKVEYRAEKAGIIHASIGKVSFSTEDLVENFNTLQDVIAKAKPASAKGTYFKSVAVTTTMGPGVKVD 225
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_RICCK (50S ribosomal protein L1 OS=Rickettsia canadensis (strain McKiel) GN=rplA PE=3 SV=1) HSP 1 Score: 141.739 bits (356), Expect = 4.123e-33 Identity = 67/135 (49.63%), Postives = 94/135 (69.63%), Query Frame = -1 Query: 361 ADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNI 765 ADLVG +I++IK G + FD IA+PDMM + S+ +ILGP+GLMPNPK GTVT +I AI+ K G+VEYRA+K GI+H GK FS+ DLL N ++++ KP G KG Y K+ Y+ S+MG S+++++ Sbjct: 101 ADLVGSTSIIDEIKAGKINFDVCIATPDMMAAIGSVARILGPKGLMPNPKLGTVTLDIKNAIKNAKSGQVEYRAEKAGIIHAGLGKLSFSDQDLLQNLNEFIEAVIKAKPAGLKGSYLKAMYLSSTMGASVQIDL 235
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_PELTS (50S ribosomal protein L1 OS=Pelotomaculum thermopropionicum (strain DSM 13744 / JCM 10971 / SI) GN=rplA PE=3 SV=1) HSP 1 Score: 141.739 bits (356), Expect = 4.123e-33 Identity = 68/139 (48.92%), Postives = 96/139 (69.06%), Query Frame = -1 Query: 352 ADLVGGDDLIEQIKG-GFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEM 765 AD VG +D++ +I+ G++ FD IA+PDMM V LG+ILGPRGLMPNPK GTVT +I +A++E K GK+EYR DK GI+H P GK FS + L+ N ++++ KP AKG Y K + S+MGP I++N +++ Sbjct: 92 ADFVGAEDMVARIQQEGWLGFDVAIATPDMMGMVGKLGRILGPRGLMPNPKTGTVTFDIARAVKEVKAGKIEYRVDKAGIIHAPIGKVSFSTEKLVENLRTLIEALIRAKPAAAKGQYLKGISVSSTMGPGIKVNTQKV 230
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_KOSOT (50S ribosomal protein L1 OS=Kosmotoga olearia (strain TBF 19.5.1) GN=rplA PE=3 SV=1) HSP 1 Score: 141.739 bits (356), Expect = 4.123e-33 Identity = 66/140 (47.14%), Postives = 99/140 (70.71%), Query Frame = -1 Query: 346 ADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEMLD 765 AD VG D+LI+QI+ G+ +FD IA+PDMM ++ LG+ILGPRGLMP+PKAGTVTT++ +A++ FK G+VE + DKTG +H P GK F + L N ++A++ I KP AKG + + +MGP I+L+ +++++ Sbjct: 92 ADFVGSDELIQQIQKGWTDFDVAIATPDMMREIGRLGRILGPRGLMPSPKAGTVTTDVAEAVKAFKAGRVEIKNDKTGNLHFPIGKKSFDSEKLKENLVSALEQISKMKPAAAKGRFIVKVVVAPTMGPGIKLDHQKVVE 231
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_GEOTN (50S ribosomal protein L1 OS=Geobacillus thermodenitrificans (strain NG80-2) GN=rplA PE=3 SV=1) HSP 1 Score: 141.739 bits (356), Expect = 4.123e-33 Identity = 66/134 (49.25%), Postives = 92/134 (68.66%), Query Frame = -1 Query: 364 ADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLN 765 AD VG + I +I+ G+ +FD ++A+PDMM +V LG+ILGP+GLMPNPK GTVT ++ +A++E K GKVEYR DK G +H+P GK F + L NF ++I KP AKG Y K+ I S+MGP I+++ Sbjct: 92 ADYVGDTEYINKIQQGWFDFDVVVATPDMMGEVGKLGRILGPKGLMPNPKTGTVTFDVTKAVQEIKAGKVEYRVDKAGNIHVPIGKVSFDNEKLAENFATIYEAILKAKPAAAKGTYVKNVTITSTMGPGIKVD 225
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_GEOSW (50S ribosomal protein L1 OS=Geobacillus sp. (strain WCH70) GN=rplA PE=3 SV=1) HSP 1 Score: 141.739 bits (356), Expect = 4.123e-33 Identity = 66/134 (49.25%), Postives = 92/134 (68.66%), Query Frame = -1 Query: 364 ADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLN 765 AD VG + I +I+ G+ +FD ++A+PDMM +V LG+ILGP+GLMPNPK GTVT ++ +A++E K GKVEYR DK G +H+P GK F + L NF ++I KP AKG Y K+ I S+MGP I+++ Sbjct: 92 ADYVGDTEYINKIQQGWFDFDVVVATPDMMGEVGKLGRILGPKGLMPNPKTGTVTFDVAKAVQEIKAGKVEYRVDKAGNIHVPIGKVSFDNEKLAENFTTIYEAILKAKPAAAKGTYVKNVTITSTMGPGIKVD 225
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_THICR (50S ribosomal protein L1 OS=Thiomicrospira crunogena (strain XCL-2) GN=rplA PE=3 SV=1) HSP 1 Score: 141.354 bits (355), Expect = 5.385e-33 Identity = 70/134 (52.24%), Postives = 89/134 (66.42%), Query Frame = -1 Query: 364 ADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLN 765 A+ VG DDL ++KGG M+FD +IASPD M V LG++LGPRGLMPNPK GTVT ++ AI+ K G+V +RADK GIVH GK DF+ + L N A ++ + KP AKG Y K I S+MGP I L+ Sbjct: 94 AEFVGMDDLAAEVKGGMMDFDVVIASPDAMRVVGMLGQVLGPRGLMPNPKTGTVTPDVVTAIKNAKSGQVRFRADKAGIVHASIGKVDFAPEKLKENLNALIEDLNKAKPAAAKGTYMKKVSISSTMGPGIVLD 227
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_RICTY (50S ribosomal protein L1 OS=Rickettsia typhi GN=rplA PE=3 SV=1) HSP 1 Score: 141.354 bits (355), Expect = 5.385e-33 Identity = 68/135 (50.37%), Postives = 96/135 (71.11%), Query Frame = -1 Query: 361 ADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNI 765 ADLVG ++I++IK G + FD IA+PDMM ++S+ +ILGP+GLMPNPK GTVT +I AI+ K G+VEYRA+K GI+H GK FS+ DLL N A + ++ KP G KG Y K+ Y+ S+MG S+++++ Sbjct: 100 ADLVGSINIIDEIKSGQINFDVCIATPDMMSMISSVARILGPKGLMPNPKLGTVTLDIKNAIKNAKSGQVEYRAEKAGIIHAGLGKLSFSDQDLLKNLNAFIGAVIKAKPVGLKGSYLKAIYLSSTMGASVQIDL 234
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_PARUW (50S ribosomal protein L1 OS=Protochlamydia amoebophila (strain UWE25) GN=rplA PE=3 SV=1) HSP 1 Score: 141.354 bits (355), Expect = 5.385e-33 Identity = 65/137 (47.45%), Postives = 98/137 (71.53%), Query Frame = -1 Query: 355 ADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKE 765 AD G D+L+E++ GG+ +FD ++A+PDMM +V LGK+LGPRGLMP PKAGTVTT+I +AI+E K GK+E++ D+ G+++ GK F + L N A + +I+ KP AKG Y +S I S+MGP ++++++E Sbjct: 92 ADYAGHDELLEKVNGGWTDFDAVVATPDMMREVGKLGKVLGPRGLMPTPKAGTVTTDIAKAIQELKAGKIEFKLDRHGVINNGVGKVSFESNKLEENIRAFLIAIQRAKPASAKGHYMRSLAISSTMGPGLKIDLRE 228
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_NAUPA (50S ribosomal protein L1 OS=Nautilia profundicola (strain ATCC BAA-1463 / DSM 18972 / AmH) GN=rplA PE=3 SV=1) HSP 1 Score: 141.354 bits (355), Expect = 5.385e-33 Identity = 65/142 (45.77%), Postives = 99/142 (69.72%), Query Frame = -1 Query: 340 ADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEMLDYK 765 AD+VG ++++E I+ G ++FD LIA+PDMM K+ GKILGP+GLMPNPK GTVT ++ QA++ K G+V +R DK G +H+ GKA F + + N +A ++ I KP AKG Y ++A + +M PS++L++ E+ +YK Sbjct: 92 ADIVGEEEVLEMIQNGNLDFDILIATPDMMGKLGRFGKILGPKGLMPNPKTGTVTMDVAQAVKNAKAGQVNFRVDKKGNMHVGIGKASFDAEKIYENAVAFIEKINKMKPASAKGRYIQNAALSLTMSPSVKLDVNELTEYK 233 The following BLAST results are available for this feature:
BLAST of CN188884 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >CN188884 ID=CN188884; Name=CN188884; organism=Citrus sinensis; type=EST; length=765bpback to top |