CN188884

Overview
NameCN188884
Unique NameCN188884
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length765
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CN188884_ssr99 microsatellite CN188884_ssr99:99..110. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig2689 contig Csv1_Contig2689:1..766. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_LACRJ (50S ribosomal protein L1 OS=Lactobacillus reuteri (strain JCM 1112) GN=rplA PE=3 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 7.776e-32
Identity = 64/135 (47.41%), Postives = 90/135 (66.67%), Query Frame = -1
Query:  361 ADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNI 765
            AD VG DDL+E+I+ G+++FD  IA+PDMM KV  LG++LGP+GLMPNPK GTVT ++ +A+ + K G+V YR D+ G V +PFGK  F  D L+ N       +   +P   +G Y K A I S+ GPS+ L++
Sbjct:   93 ADFVGDDDLVEKIQDGWLDFDVAIATPDMMPKVGRLGRVLGPKGLMPNPKTGTVTMDVAKAVSDAKAGQVTYRTDRDGNVAVPFGKVSFDTDKLVENLATLEDIVAKARPASVRGTYIKHASISSTFGPSVTLDL 227          
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_HAEIN (50S ribosomal protein L1 OS=Haemophilus influenzae GN=rplA PE=3 SV=2)

HSP 1 Score: 137.502 bits (345), Expect = 7.776e-32
Identity = 68/134 (50.75%), Postives = 90/134 (67.16%), Query Frame = -1
Query:  364 ADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLN 765
            ADLVG +DL EQIK G M FD +IASPD M  V  LG++LGPRGLMPNPK GTVT N+ +A++  K G++ YR DK GI+H   GKA+FSE  L  N  A + ++   KP  AKG++ K   I ++MG  + ++
Sbjct:   92 ADLVGMEDLAEQIKKGEMNFDVVIASPDAMRVVGQLGQVLGPRGLMPNPKVGTVTPNVAEAVKNAKSGQIRYRNDKNGIIHTTIGKANFSEVQLKENLQALLAALNKAKPTTAKGIFIKKVSISTTMGAGVAVD 225          
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_HAEIG (50S ribosomal protein L1 OS=Haemophilus influenzae (strain PittGG) GN=rplA PE=3 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 7.776e-32
Identity = 68/134 (50.75%), Postives = 90/134 (67.16%), Query Frame = -1
Query:  364 ADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLN 765
            ADLVG +DL EQIK G M FD +IASPD M  V  LG++LGPRGLMPNPK GTVT N+ +A++  K G++ YR DK GI+H   GKA+FSE  L  N  A + ++   KP  AKG++ K   I ++MG  + ++
Sbjct:   92 ADLVGMEDLAEQIKKGEMNFDVVIASPDAMRVVGQLGQVLGPRGLMPNPKVGTVTPNVAEAVKNAKSGQIRYRNDKNGIIHTTIGKANFSEVQLKENLQALLAALNKAKPTTAKGIFIKKVSISTTMGAGVAVD 225          
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_HAEI8 (50S ribosomal protein L1 OS=Haemophilus influenzae (strain 86-028NP) GN=rplA PE=3 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 7.776e-32
Identity = 68/134 (50.75%), Postives = 90/134 (67.16%), Query Frame = -1
Query:  364 ADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLN 765
            ADLVG +DL EQIK G M FD +IASPD M  V  LG++LGPRGLMPNPK GTVT N+ +A++  K G++ YR DK GI+H   GKA+FSE  L  N  A + ++   KP  AKG++ K   I ++MG  + ++
Sbjct:   92 ADLVGMEDLAEQIKKGEMNFDVVIASPDAMRVVGQLGQVLGPRGLMPNPKVGTVTPNVAEAVKNAKSGQIRYRNDKNGIIHTTIGKANFSEVQLKENLQALLAALNKAKPTTAKGIFIKKVSISTTMGAGVAVD 225          
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_ENTS8 (50S ribosomal protein L1 OS=Enterobacter sakazakii (strain ATCC BAA-894) GN=rplA PE=3 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 7.776e-32
Identity = 68/134 (50.75%), Postives = 89/134 (66.42%), Query Frame = -1
Query:  364 ADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLN 765
            A+LVG +DL EQIK G M FD +IASPD M  V  LG++LGPRGLMPNPK GTVT N+ +A++  K G+V YR DK GI+H   GK DF  D L  N  A + +++  KP  AKGVY K   + ++MG  + ++
Sbjct:   92 AELVGMEDLAEQIKKGEMNFDVVIASPDAMRVVGQLGQVLGPRGLMPNPKVGTVTPNVAEAVKNAKAGQVRYRNDKNGIIHTTIGKVDFDADKLKENLEALLVALKKAKPSSAKGVYIKKVSLSTTMGAGVAVD 225          
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_ANATD (50S ribosomal protein L1 OS=Anaerocellum thermophilum (strain DSM 6725 / Z-1320) GN=rplA PE=3 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 7.776e-32
Identity = 65/135 (48.15%), Postives = 96/135 (71.11%), Query Frame = -1
Query:  364 ADLVGGDDLIEQIKG-GFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLN 765
            AD VG ++L+ +I+  G+ +FD  IA+PDMM  V  LGKILGP+GLMPNPK+GTVT ++ +A++E K G+VE+R DKT I+H P GK  F ++ LL N+   +++I   +P  AKG + KS  + ++MGP I++N
Sbjct:   91 ADYVGAEELVAKIQNEGWTDFDVCIATPDMMGLVGRLGKILGPKGLMPNPKSGTVTMDVAKAVKEAKAGRVEFRLDKTAIIHCPIGKVSFGKEKLLENYRTLIEAIIKARPAAAKGQFIKSITVATTMGPGIKIN 225          
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_YERPY (50S ribosomal protein L1 OS=Yersinia pseudotuberculosis serotype O:3 (strain YPIII) GN=rplA PE=3 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 1.016e-31
Identity = 68/134 (50.75%), Postives = 89/134 (66.42%), Query Frame = -1
Query:  364 ADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLN 765
            A+LVG DDL +QIK G M FD +IASPD M  V  LG+ILGPRGLMPNPK GTVT N+ +A++  K G+V YR DK GI+H   GK DF  D L  N  + V +++  KP  AKG+Y K   + ++MG  + ++
Sbjct:   92 AELVGMDDLADQIKKGEMNFDVVIASPDAMRVVGQLGQILGPRGLMPNPKVGTVTPNVAEAVKNAKAGQVRYRNDKNGIIHTTIGKVDFDSDKLKENLESLVVALKKAKPATAKGIYIKKISLSTTMGAGVAID 225          
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_YERPS (50S ribosomal protein L1 OS=Yersinia pseudotuberculosis GN=rplA PE=3 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 1.016e-31
Identity = 68/134 (50.75%), Postives = 89/134 (66.42%), Query Frame = -1
Query:  364 ADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLN 765
            A+LVG DDL +QIK G M FD +IASPD M  V  LG+ILGPRGLMPNPK GTVT N+ +A++  K G+V YR DK GI+H   GK DF  D L  N  + V +++  KP  AKG+Y K   + ++MG  + ++
Sbjct:   92 AELVGMDDLADQIKKGEMNFDVVIASPDAMRVVGQLGQILGPRGLMPNPKVGTVTPNVAEAVKNAKAGQVRYRNDKNGIIHTTIGKVDFDSDKLKENLESLVVALKKAKPATAKGIYIKKISLSTTMGAGVAID 225          
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_YERPP (50S ribosomal protein L1 OS=Yersinia pestis (strain Pestoides F) GN=rplA PE=3 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 1.016e-31
Identity = 68/134 (50.75%), Postives = 89/134 (66.42%), Query Frame = -1
Query:  364 ADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLN 765
            A+LVG DDL +QIK G M FD +IASPD M  V  LG+ILGPRGLMPNPK GTVT N+ +A++  K G+V YR DK GI+H   GK DF  D L  N  + V +++  KP  AKG+Y K   + ++MG  + ++
Sbjct:   92 AELVGMDDLADQIKKGEMNFDVVIASPDAMRVVGQLGQILGPRGLMPNPKVGTVTPNVAEAVKNAKAGQVRYRNDKNGIIHTTIGKVDFDSDKLKENLESLVVALKKAKPATAKGIYIKKISLSTTMGAGVAID 225          
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_YERPN (50S ribosomal protein L1 OS=Yersinia pestis bv. Antiqua (strain Nepal516) GN=rplA PE=3 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 1.016e-31
Identity = 68/134 (50.75%), Postives = 89/134 (66.42%), Query Frame = -1
Query:  364 ADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLN 765
            A+LVG DDL +QIK G M FD +IASPD M  V  LG+ILGPRGLMPNPK GTVT N+ +A++  K G+V YR DK GI+H   GK DF  D L  N  + V +++  KP  AKG+Y K   + ++MG  + ++
Sbjct:   92 AELVGMDDLADQIKKGEMNFDVVIASPDAMRVVGQLGQILGPRGLMPNPKVGTVTPNVAEAVKNAKAGQVRYRNDKNGIIHTTIGKVDFDSDKLKENLESLVVALKKAKPATAKGIYIKKISLSTTMGAGVAID 225          
The following BLAST results are available for this feature:
BLAST of CN188884 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL1_LACRJ7.776e-3247.4150S ribosomal protein L1 OS=Lactobacillus reuteri ... [more]
RL1_HAEIN7.776e-3250.7550S ribosomal protein L1 OS=Haemophilus influenzae... [more]
RL1_HAEIG7.776e-3250.7550S ribosomal protein L1 OS=Haemophilus influenzae... [more]
RL1_HAEI87.776e-3250.7550S ribosomal protein L1 OS=Haemophilus influenzae... [more]
RL1_ENTS87.776e-3250.7550S ribosomal protein L1 OS=Enterobacter sakazakii... [more]
RL1_ANATD7.776e-3248.1550S ribosomal protein L1 OS=Anaerocellum thermophi... [more]
RL1_YERPY1.016e-3150.7550S ribosomal protein L1 OS=Yersinia pseudotubercu... [more]
RL1_YERPS1.016e-3150.7550S ribosomal protein L1 OS=Yersinia pseudotubercu... [more]
RL1_YERPP1.016e-3150.7550S ribosomal protein L1 OS=Yersinia pestis (strai... [more]
RL1_YERPN1.016e-3150.7550S ribosomal protein L1 OS=Yersinia pestis bv. An... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0006P10_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0006P10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188884 ID=CN188884; Name=CN188884; organism=Citrus sinensis; type=EST; length=765bp
TTTTTTTTTTTTTTTTTACAAGAATGGAAAAATATTCAGTAGCCATTCAA
GTAATTTTACAGAAAAAAAAATTGCGGTAATGAACCTGAGAGTGGGCGAT
AATAATAATATCTTTTTCAGTACGGAAAAAAGCCATGCTGTATGCATTTT
TCCTTTTTTTTATTTGCTACAATCTCATCCACATTGATAATCAAGATCTC
CTCACCTCACCATAATTCACTCTCCTACAACTTTTGCCAAGCAGTGGCAA
GCCCTGGCATGGGTATCAAAGAGGCTGACTGAACAGTTAAAGCTATCATT
TACAAAATTTAGTTATGTCATTTAGAAATTTGATGGAAGCTTGTAATCGA
GCATTTCTTTTATGTTTAATCGAATGGAAGGTCCCATTGATGAGCAAATG
TAAGCACTTTTCCAGTACACTCCTTTGGCCCCTTTTGGCTTGTTTGCTTC
AATTGATTTAACAGCAGCAAGGAAGTTTATGAGGAGGTCATCTTCAGAAA
AATCAGCTTTCCCAAAAGGTATGTGGACAATCCCAGTTTTATCTGCTCTA
TATTCAACTTTTCCCTTCTTGAATTCTTCTATGGCCTGAGGTATGTTAGT
TGTAACAGTACCAGCTTTAGGATTTGGCATGAGTCCCCGTGGTCCAAGAA
TTTTTCCTAGGCTGGCAACCTTAACCATCATATCTGGTGAAGCAATTAGC
TTGTCGAACTCCATGAATCCTCCTTTTATTTGTTCAATCAAGTCATCACC
ACCAACCAAATCTGC
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