CN188884

Overview
NameCN188884
Unique NameCN188884
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length765
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_YERPG (50S ribosomal protein L1 OS=Yersinia pestis bv. Antiqua (strain Angola) GN=rplA PE=3 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 1.016e-31
Identity = 68/134 (50.75%), Postives = 89/134 (66.42%), Query Frame = -1
Query:  364 ADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLN 765
            A+LVG DDL +QIK G M FD +IASPD M  V  LG+ILGPRGLMPNPK GTVT N+ +A++  K G+V YR DK GI+H   GK DF  D L  N  + V +++  KP  AKG+Y K   + ++MG  + ++
Sbjct:   92 AELVGMDDLADQIKKGEMNFDVVIASPDAMRVVGQLGQILGPRGLMPNPKVGTVTPNVAEAVKNAKAGQVRYRNDKNGIIHTTIGKVDFDSDKLKENLESLVVALKKAKPATAKGIYIKKISLSTTMGAGVAID 225          
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_YERPE (50S ribosomal protein L1 OS=Yersinia pestis GN=rplA PE=3 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 1.016e-31
Identity = 68/134 (50.75%), Postives = 89/134 (66.42%), Query Frame = -1
Query:  364 ADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLN 765
            A+LVG DDL +QIK G M FD +IASPD M  V  LG+ILGPRGLMPNPK GTVT N+ +A++  K G+V YR DK GI+H   GK DF  D L  N  + V +++  KP  AKG+Y K   + ++MG  + ++
Sbjct:   92 AELVGMDDLADQIKKGEMNFDVVIASPDAMRVVGQLGQILGPRGLMPNPKVGTVTPNVAEAVKNAKAGQVRYRNDKNGIIHTTIGKVDFDSDKLKENLESLVVALKKAKPATAKGIYIKKISLSTTMGAGVAID 225          
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_YERPB (50S ribosomal protein L1 OS=Yersinia pseudotuberculosis serotype IB (strain PB1/+) GN=rplA PE=3 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 1.016e-31
Identity = 68/134 (50.75%), Postives = 89/134 (66.42%), Query Frame = -1
Query:  364 ADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLN 765
            A+LVG DDL +QIK G M FD +IASPD M  V  LG+ILGPRGLMPNPK GTVT N+ +A++  K G+V YR DK GI+H   GK DF  D L  N  + V +++  KP  AKG+Y K   + ++MG  + ++
Sbjct:   92 AELVGMDDLADQIKKGEMNFDVVIASPDAMRVVGQLGQILGPRGLMPNPKVGTVTPNVAEAVKNAKAGQVRYRNDKNGIIHTTIGKVDFDSDKLKENLESLVVALKKAKPATAKGIYIKKISLSTTMGAGVAID 225          
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_YERPA (50S ribosomal protein L1 OS=Yersinia pestis bv. Antiqua (strain Antiqua) GN=rplA PE=3 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 1.016e-31
Identity = 68/134 (50.75%), Postives = 89/134 (66.42%), Query Frame = -1
Query:  364 ADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLN 765
            A+LVG DDL +QIK G M FD +IASPD M  V  LG+ILGPRGLMPNPK GTVT N+ +A++  K G+V YR DK GI+H   GK DF  D L  N  + V +++  KP  AKG+Y K   + ++MG  + ++
Sbjct:   92 AELVGMDDLADQIKKGEMNFDVVIASPDAMRVVGQLGQILGPRGLMPNPKVGTVTPNVAEAVKNAKAGQVRYRNDKNGIIHTTIGKVDFDSDKLKENLESLVVALKKAKPATAKGIYIKKISLSTTMGAGVAID 225          
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_YERP3 (50S ribosomal protein L1 OS=Yersinia pseudotuberculosis serotype O:1b (strain IP 31758) GN=rplA PE=3 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 1.016e-31
Identity = 68/134 (50.75%), Postives = 89/134 (66.42%), Query Frame = -1
Query:  364 ADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLN 765
            A+LVG DDL +QIK G M FD +IASPD M  V  LG+ILGPRGLMPNPK GTVT N+ +A++  K G+V YR DK GI+H   GK DF  D L  N  + V +++  KP  AKG+Y K   + ++MG  + ++
Sbjct:   92 AELVGMDDLADQIKKGEMNFDVVIASPDAMRVVGQLGQILGPRGLMPNPKVGTVTPNVAEAVKNAKAGQVRYRNDKNGIIHTTIGKVDFDSDKLKENLESLVVALKKAKPATAKGIYIKKISLSTTMGAGVAID 225          
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_THELT (50S ribosomal protein L1 OS=Thermotoga lettingae (strain ATCC BAA-301 / DSM 14385 / TMO) GN=rplA PE=3 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 1.016e-31
Identity = 67/139 (48.20%), Postives = 94/139 (67.63%), Query Frame = -1
Query:  352 ADLVGGDDLIEQIKG-GFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEM 765
            AD VGGD+L+E+I    F +FD  IA+PDMM  +  LGKILGPRGLMP+PK+GTVT ++  A++ FK G++E R DKTG +HIP GK  F  + L  N L+A + I A +P G KG + K   + S+MG  I+++  ++
Sbjct:   92 ADYVGGDELVEKITNENFTDFDVAIATPDMMRSIGKLGKILGPRGLMPSPKSGTVTEDVETAVKAFKMGRIEVRNDKTGCIHIPVGKCSFDGEKLRENLLSAYRQIIALRPAGVKGQFIKRVVLSSTMGVGIKIDQSDL 230          
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_SODGM (50S ribosomal protein L1 OS=Sodalis glossinidius (strain morsitans) GN=rplA PE=3 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 1.016e-31
Identity = 69/134 (51.49%), Postives = 88/134 (65.67%), Query Frame = -1
Query:  364 ADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLN 765
            ADLVG DDL +QIK G   FD +IASPD M  V  LG+ILGPRGLMPNPK GTVT N+ +A++  K G+V YR DK GI+H   GK DF  D L  N  A + +++  KP  AKGVY K   + ++MG  + ++
Sbjct:   92 ADLVGMDDLADQIKKGEFNFDVVIASPDAMRVVGQLGQILGPRGLMPNPKVGTVTPNVAEAVKNAKAGQVRYRNDKNGIIHTTIGKVDFESDKLKENLEALLVALKKAKPTQAKGVYIKKVSLSTTMGAGVAVD 225          
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_RHIEC (50S ribosomal protein L1 OS=Rhizobium etli (strain CFN 42 / ATCC 51251) GN=rplA PE=3 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 1.016e-31
Identity = 67/135 (49.63%), Postives = 90/135 (66.67%), Query Frame = -1
Query:  361 ADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNI 765
            AD+VG +DL+E ++GG +EFD+ IA+PDMM  V  LGK+LGPRG+MPNPK GTVT ++  A++  K G VE+R +K GIVH   GKA F    L  N  A   ++   KP GAKG Y K   I S+MGP +++ +
Sbjct:   90 ADVVGAEDLVEIVQGGKIEFDRCIATPDMMPLVGRLGKVLGPRGMMPNPKVGTVTMDVAGAVKASKGGAVEFRVEKAGIVHAGIGKASFDAKALEENIRAFADAVIKAKPAGAKGNYVKRVAISSTMGPGVKIEV 224          
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_RHIE6 (50S ribosomal protein L1 OS=Rhizobium etli (strain CIAT 652) GN=rplA PE=3 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 1.016e-31
Identity = 67/135 (49.63%), Postives = 90/135 (66.67%), Query Frame = -1
Query:  361 ADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNI 765
            AD+VG +DL+E ++GG +EFD+ IA+PDMM  V  LGK+LGPRG+MPNPK GTVT ++  A++  K G VE+R +K GIVH   GKA F    L  N  A   ++   KP GAKG Y K   I S+MGP +++ +
Sbjct:   90 ADVVGAEDLVEIVQGGKIEFDRCIATPDMMPLVGRLGKVLGPRGMMPNPKVGTVTMDVAGAVKASKGGAVEFRVEKAGIVHAGIGKASFDAKALEENIRAFADAVIKAKPAGAKGNYVKRVAISSTMGPGVKIEV 224          
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_PROMH (50S ribosomal protein L1 OS=Proteus mirabilis (strain HI4320) GN=rplA PE=3 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 1.016e-31
Identity = 67/134 (50.00%), Postives = 90/134 (67.16%), Query Frame = -1
Query:  364 ADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLN 765
            A+LVG DDL  ++K G M+FD +IASPD M  V  LG+ILGPRGLMPNPK GTVT N+ +A++  K G+V YR DK GI+H   GK DF+E  L  N  A + +++  KP  AKGVY K   + ++MG  + ++
Sbjct:   92 AELVGMDDLAAKVKAGEMDFDVVIASPDAMRVVGQLGQILGPRGLMPNPKVGTVTPNVAEAVKNAKAGQVRYRNDKNGIIHTTIGKVDFNEAQLKENLEALLVALKKAKPSSAKGVYIKKVSLSTTMGAGVAID 225          
The following BLAST results are available for this feature:
BLAST of CN188884 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL1_YERPG1.016e-3150.7550S ribosomal protein L1 OS=Yersinia pestis bv. An... [more]
RL1_YERPE1.016e-3150.7550S ribosomal protein L1 OS=Yersinia pestis GN=rpl... [more]
RL1_YERPB1.016e-3150.7550S ribosomal protein L1 OS=Yersinia pseudotubercu... [more]
RL1_YERPA1.016e-3150.7550S ribosomal protein L1 OS=Yersinia pestis bv. An... [more]
RL1_YERP31.016e-3150.7550S ribosomal protein L1 OS=Yersinia pseudotubercu... [more]
RL1_THELT1.016e-3148.2050S ribosomal protein L1 OS=Thermotoga lettingae (... [more]
RL1_SODGM1.016e-3151.4950S ribosomal protein L1 OS=Sodalis glossinidius (... [more]
RL1_RHIEC1.016e-3149.6350S ribosomal protein L1 OS=Rhizobium etli (strain... [more]
RL1_RHIE61.016e-3149.6350S ribosomal protein L1 OS=Rhizobium etli (strain... [more]
RL1_PROMH1.016e-3150.0050S ribosomal protein L1 OS=Proteus mirabilis (str... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0006P10_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0006P10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188884 ID=CN188884; Name=CN188884; organism=Citrus sinensis; type=EST; length=765bp
TTTTTTTTTTTTTTTTTACAAGAATGGAAAAATATTCAGTAGCCATTCAA
GTAATTTTACAGAAAAAAAAATTGCGGTAATGAACCTGAGAGTGGGCGAT
AATAATAATATCTTTTTCAGTACGGAAAAAAGCCATGCTGTATGCATTTT
TCCTTTTTTTTATTTGCTACAATCTCATCCACATTGATAATCAAGATCTC
CTCACCTCACCATAATTCACTCTCCTACAACTTTTGCCAAGCAGTGGCAA
GCCCTGGCATGGGTATCAAAGAGGCTGACTGAACAGTTAAAGCTATCATT
TACAAAATTTAGTTATGTCATTTAGAAATTTGATGGAAGCTTGTAATCGA
GCATTTCTTTTATGTTTAATCGAATGGAAGGTCCCATTGATGAGCAAATG
TAAGCACTTTTCCAGTACACTCCTTTGGCCCCTTTTGGCTTGTTTGCTTC
AATTGATTTAACAGCAGCAAGGAAGTTTATGAGGAGGTCATCTTCAGAAA
AATCAGCTTTCCCAAAAGGTATGTGGACAATCCCAGTTTTATCTGCTCTA
TATTCAACTTTTCCCTTCTTGAATTCTTCTATGGCCTGAGGTATGTTAGT
TGTAACAGTACCAGCTTTAGGATTTGGCATGAGTCCCCGTGGTCCAAGAA
TTTTTCCTAGGCTGGCAACCTTAACCATCATATCTGGTGAAGCAATTAGC
TTGTCGAACTCCATGAATCCTCCTTTTATTTGTTCAATCAAGTCATCACC
ACCAACCAAATCTGC
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