CN188884
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_MYCS2 (50S ribosomal protein L1 OS=Mycobacterium smegmatis GN=rplA PE=1 SV=1) HSP 1 Score: 137.117 bits (344), Expect = 1.016e-31 Identity = 63/131 (48.09%), Postives = 88/131 (67.18%), Query Frame = -1 Query: 373 ADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSI 765 AD+VG DDLIE+I+GGF++FD IA+PD M KV + ++LGPRGLMPNPK GTVT ++ +A+++ K GK+ +R DK +H GKA F E L N+ AA+ + KP +KG Y K + ++ GP I Sbjct: 92 ADIVGSDDLIEKIQGGFLDFDAAIATPDQMAKVGRIARVLGPRGLMPNPKTGTVTPDVAKAVQDIKGGKINFRVDKQANLHFIIGKASFDETKLAENYGAALDEVLRAKPSSSKGRYLKKVTVSTTTGPGI 222
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_MYCMM (50S ribosomal protein L1 OS=Mycobacterium marinum (strain ATCC BAA-535 / M) GN=rplA PE=3 SV=1) HSP 1 Score: 137.117 bits (344), Expect = 1.016e-31 Identity = 63/131 (48.09%), Postives = 88/131 (67.18%), Query Frame = -1 Query: 373 ADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSI 765 AD+VG DDLIE+I+GGF++FD IA+PD M KV + ++LGPRGLMPNPK GTVT ++ +A+ + K GK+ +R DK +H GKA F E+ L N+ AA+ + KP +KG Y K + ++ GP I Sbjct: 92 ADIVGSDDLIEKIQGGFLDFDAAIATPDQMAKVGRIARVLGPRGLMPNPKTGTVTPDVAKAVADIKGGKINFRVDKQANLHFVIGKASFEENKLAENYGAAIDEVLRLKPSASKGRYLKKITVSTTTGPGI 222
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_MYCLE (50S ribosomal protein L1 OS=Mycobacterium leprae GN=rplA PE=3 SV=1) HSP 1 Score: 137.117 bits (344), Expect = 1.016e-31 Identity = 63/131 (48.09%), Postives = 89/131 (67.94%), Query Frame = -1 Query: 373 ADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSI 765 AD+VG DDLIE+I+GG++EFD +A+PD M KV + ++LGPRGLMPNPK GTVT ++ +A+ + K GK+ +R DK +H GKA F E L N+ AA++ + KP +KG Y K + ++MGP I Sbjct: 92 ADVVGSDDLIEKIQGGWLEFDAAVATPDQMAKVGRIARVLGPRGLMPNPKTGTVTPDVAKAVADIKGGKINFRVDKQANLHFVIGKASFDEKRLAENYGAALEEVLRLKPSSSKGRYLKKVTVSTTMGPGI 222
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_MYCLB (50S ribosomal protein L1 OS=Mycobacterium leprae (strain Br4923) GN=rplA PE=3 SV=1) HSP 1 Score: 137.117 bits (344), Expect = 1.016e-31 Identity = 63/131 (48.09%), Postives = 89/131 (67.94%), Query Frame = -1 Query: 373 ADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSI 765 AD+VG DDLIE+I+GG++EFD +A+PD M KV + ++LGPRGLMPNPK GTVT ++ +A+ + K GK+ +R DK +H GKA F E L N+ AA++ + KP +KG Y K + ++MGP I Sbjct: 92 ADVVGSDDLIEKIQGGWLEFDAAVATPDQMAKVGRIARVLGPRGLMPNPKTGTVTPDVAKAVADIKGGKINFRVDKQANLHFVIGKASFDEKRLAENYGAALEEVLRLKPSSSKGRYLKKVTVSTTMGPGI 222
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_MYCGI (50S ribosomal protein L1 OS=Mycobacterium gilvum (strain PYR-GCK) GN=rplA PE=3 SV=1) HSP 1 Score: 137.117 bits (344), Expect = 1.016e-31 Identity = 65/131 (49.62%), Postives = 87/131 (66.41%), Query Frame = -1 Query: 373 ADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSI 765 AD+VG DDLIE+I+GGF++FD IA+PD M KV + +ILGPRGLMPNPK GTVT ++ +A+ + K GK+ +R DK +H GKA F E L N+ AA+ I KP +KG Y K + ++ GP I Sbjct: 92 ADVVGSDDLIEKIQGGFLDFDAAIATPDQMAKVGRIARILGPRGLMPNPKTGTVTPDVTKAVNDIKGGKINFRVDKQANLHFVIGKASFDEKALAENYGAALDEILRAKPSSSKGRYLKKVVVSTTTGPGI 222
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_MESSB (50S ribosomal protein L1 OS=Mesorhizobium sp. (strain BNC1) GN=rplA PE=3 SV=1) HSP 1 Score: 137.117 bits (344), Expect = 1.016e-31 Identity = 66/134 (49.25%), Postives = 90/134 (67.16%), Query Frame = -1 Query: 364 ADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLN 765 AD+VG +DL+E ++ G + FD+ IA+PDMM V LGK+LGPRGLMPNPK GTVTT++ A++ K G VE+R +K GIVH GK F E+ + N A ++ KP GAKG Y K I S+MGP ++++ Sbjct: 92 ADIVGAEDLVETVQKGEINFDRCIATPDMMPLVGRLGKVLGPRGLMPNPKVGTVTTDVAAAVKASKGGAVEFRVEKAGIVHAGVGKVSFDENAIAENVRAFADAVIKAKPSGAKGNYLKRVSITSTMGPGLKID 225
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_KLEP7 (50S ribosomal protein L1 OS=Klebsiella pneumoniae subsp. pneumoniae (strain ATCC 700721 / MGH 78578) GN=rplA PE=3 SV=1) HSP 1 Score: 137.117 bits (344), Expect = 1.016e-31 Identity = 69/134 (51.49%), Postives = 89/134 (66.42%), Query Frame = -1 Query: 364 ADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLN 765 A+LVG +DL EQIK G M FD +IASPD M V LG++LGPRGLMPNPK GTVT N+ +A++ K G+V YR DK GI+H GK DF D L N A + +++ KP AKGVY K I ++MG + ++ Sbjct: 92 AELVGMEDLAEQIKKGEMNFDVVIASPDAMRVVGQLGQVLGPRGLMPNPKVGTVTPNVAEAVKNAKAGQVRYRNDKNGIIHTTIGKVDFDADKLKENLEALLVALKKAKPTQAKGVYIKKVSISTTMGAGVAVD 225
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_HAEIE (50S ribosomal protein L1 OS=Haemophilus influenzae (strain PittEE) GN=rplA PE=3 SV=1) HSP 1 Score: 137.117 bits (344), Expect = 1.016e-31 Identity = 68/134 (50.75%), Postives = 90/134 (67.16%), Query Frame = -1 Query: 364 ADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLN 765 ADLVG +DL EQIK G M FD +IASPD M V LG++LGPRGLMPNPK GTVT N+ +A++ K G++ YR DK GI+H GKA+FSE L N A + ++ KP AKG++ K I ++MG + ++ Sbjct: 92 ADLVGMEDLAEQIKKGEMNFDVVIASPDAMRVVGQLGQVLGPRGLMPNPKVGTVTPNVAEAVKNAKSGQIRYRNDKNGIIHTTIGKANFSEVQLKENLQALLVALNKAKPTTAKGIFIKKVSISTTMGAGVAVD 225
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_HAEDU (50S ribosomal protein L1 OS=Haemophilus ducreyi GN=rplA PE=3 SV=2) HSP 1 Score: 137.117 bits (344), Expect = 1.016e-31 Identity = 67/131 (51.15%), Postives = 87/131 (66.41%), Query Frame = -1 Query: 373 ADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSI 765 ADLVG +DL EQIK G M FD +IASPD M V LG++LGPRGLMPNPK GTVT N+ +A++ K G++ YR DK GI+H GK DFSE L N A + ++ KP AKG++ K + ++MG + Sbjct: 92 ADLVGMEDLAEQIKKGEMNFDVVIASPDAMRVVGQLGQVLGPRGLMPNPKVGTVTLNVAEAVKNAKSGQIRYRNDKNGIIHTTIGKVDFSEVQLKENLQALLAALNKAKPTTAKGIFIKKVSVSTTMGAGV 222
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_FUSNN (50S ribosomal protein L1 OS=Fusobacterium nucleatum subsp. nucleatum GN=rplA PE=3 SV=1) HSP 1 Score: 137.117 bits (344), Expect = 1.016e-31 Identity = 64/134 (47.76%), Postives = 91/134 (67.91%), Query Frame = -1 Query: 364 ADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLN 765 AD G ++ I QI+ G+++FD +IA+PDMM K+ LGKILG +GLMPNPK+GTVT +I A+ EFKKGK+ +R DK G +H P GK DF D + NF A + I KP +KG Y ++ + +MGP ++++ Sbjct: 93 ADYAGAEEYINQIQQGWLDFDLVIATPDMMPKIGRLGKILGTKGLMPNPKSGTVTPDIAAAVSEFKKGKLAFRVDKLGSIHAPIGKVDFDLDKIEENFKAFMDQIIRLKPASSKGQYLRTVAVSLTMGPGVKMD 226 The following BLAST results are available for this feature:
BLAST of CN188884 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >CN188884 ID=CN188884; Name=CN188884; organism=Citrus sinensis; type=EST; length=765bpback to top |