CN188884

Overview
NameCN188884
Unique NameCN188884
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length765
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_MYCS2 (50S ribosomal protein L1 OS=Mycobacterium smegmatis GN=rplA PE=1 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 1.016e-31
Identity = 63/131 (48.09%), Postives = 88/131 (67.18%), Query Frame = -1
Query:  373 ADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSI 765
            AD+VG DDLIE+I+GGF++FD  IA+PD M KV  + ++LGPRGLMPNPK GTVT ++ +A+++ K GK+ +R DK   +H   GKA F E  L  N+ AA+  +   KP  +KG Y K   + ++ GP I
Sbjct:   92 ADIVGSDDLIEKIQGGFLDFDAAIATPDQMAKVGRIARVLGPRGLMPNPKTGTVTPDVAKAVQDIKGGKINFRVDKQANLHFIIGKASFDETKLAENYGAALDEVLRAKPSSSKGRYLKKVTVSTTTGPGI 222          
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_MYCMM (50S ribosomal protein L1 OS=Mycobacterium marinum (strain ATCC BAA-535 / M) GN=rplA PE=3 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 1.016e-31
Identity = 63/131 (48.09%), Postives = 88/131 (67.18%), Query Frame = -1
Query:  373 ADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSI 765
            AD+VG DDLIE+I+GGF++FD  IA+PD M KV  + ++LGPRGLMPNPK GTVT ++ +A+ + K GK+ +R DK   +H   GKA F E+ L  N+ AA+  +   KP  +KG Y K   + ++ GP I
Sbjct:   92 ADIVGSDDLIEKIQGGFLDFDAAIATPDQMAKVGRIARVLGPRGLMPNPKTGTVTPDVAKAVADIKGGKINFRVDKQANLHFVIGKASFEENKLAENYGAAIDEVLRLKPSASKGRYLKKITVSTTTGPGI 222          
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_MYCLE (50S ribosomal protein L1 OS=Mycobacterium leprae GN=rplA PE=3 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 1.016e-31
Identity = 63/131 (48.09%), Postives = 89/131 (67.94%), Query Frame = -1
Query:  373 ADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSI 765
            AD+VG DDLIE+I+GG++EFD  +A+PD M KV  + ++LGPRGLMPNPK GTVT ++ +A+ + K GK+ +R DK   +H   GKA F E  L  N+ AA++ +   KP  +KG Y K   + ++MGP I
Sbjct:   92 ADVVGSDDLIEKIQGGWLEFDAAVATPDQMAKVGRIARVLGPRGLMPNPKTGTVTPDVAKAVADIKGGKINFRVDKQANLHFVIGKASFDEKRLAENYGAALEEVLRLKPSSSKGRYLKKVTVSTTMGPGI 222          
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_MYCLB (50S ribosomal protein L1 OS=Mycobacterium leprae (strain Br4923) GN=rplA PE=3 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 1.016e-31
Identity = 63/131 (48.09%), Postives = 89/131 (67.94%), Query Frame = -1
Query:  373 ADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSI 765
            AD+VG DDLIE+I+GG++EFD  +A+PD M KV  + ++LGPRGLMPNPK GTVT ++ +A+ + K GK+ +R DK   +H   GKA F E  L  N+ AA++ +   KP  +KG Y K   + ++MGP I
Sbjct:   92 ADVVGSDDLIEKIQGGWLEFDAAVATPDQMAKVGRIARVLGPRGLMPNPKTGTVTPDVAKAVADIKGGKINFRVDKQANLHFVIGKASFDEKRLAENYGAALEEVLRLKPSSSKGRYLKKVTVSTTMGPGI 222          
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_MYCGI (50S ribosomal protein L1 OS=Mycobacterium gilvum (strain PYR-GCK) GN=rplA PE=3 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 1.016e-31
Identity = 65/131 (49.62%), Postives = 87/131 (66.41%), Query Frame = -1
Query:  373 ADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSI 765
            AD+VG DDLIE+I+GGF++FD  IA+PD M KV  + +ILGPRGLMPNPK GTVT ++ +A+ + K GK+ +R DK   +H   GKA F E  L  N+ AA+  I   KP  +KG Y K   + ++ GP I
Sbjct:   92 ADVVGSDDLIEKIQGGFLDFDAAIATPDQMAKVGRIARILGPRGLMPNPKTGTVTPDVTKAVNDIKGGKINFRVDKQANLHFVIGKASFDEKALAENYGAALDEILRAKPSSSKGRYLKKVVVSTTTGPGI 222          
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_MESSB (50S ribosomal protein L1 OS=Mesorhizobium sp. (strain BNC1) GN=rplA PE=3 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 1.016e-31
Identity = 66/134 (49.25%), Postives = 90/134 (67.16%), Query Frame = -1
Query:  364 ADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLN 765
            AD+VG +DL+E ++ G + FD+ IA+PDMM  V  LGK+LGPRGLMPNPK GTVTT++  A++  K G VE+R +K GIVH   GK  F E+ +  N  A   ++   KP GAKG Y K   I S+MGP ++++
Sbjct:   92 ADIVGAEDLVETVQKGEINFDRCIATPDMMPLVGRLGKVLGPRGLMPNPKVGTVTTDVAAAVKASKGGAVEFRVEKAGIVHAGVGKVSFDENAIAENVRAFADAVIKAKPSGAKGNYLKRVSITSTMGPGLKID 225          
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_KLEP7 (50S ribosomal protein L1 OS=Klebsiella pneumoniae subsp. pneumoniae (strain ATCC 700721 / MGH 78578) GN=rplA PE=3 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 1.016e-31
Identity = 69/134 (51.49%), Postives = 89/134 (66.42%), Query Frame = -1
Query:  364 ADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLN 765
            A+LVG +DL EQIK G M FD +IASPD M  V  LG++LGPRGLMPNPK GTVT N+ +A++  K G+V YR DK GI+H   GK DF  D L  N  A + +++  KP  AKGVY K   I ++MG  + ++
Sbjct:   92 AELVGMEDLAEQIKKGEMNFDVVIASPDAMRVVGQLGQVLGPRGLMPNPKVGTVTPNVAEAVKNAKAGQVRYRNDKNGIIHTTIGKVDFDADKLKENLEALLVALKKAKPTQAKGVYIKKVSISTTMGAGVAVD 225          
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_HAEIE (50S ribosomal protein L1 OS=Haemophilus influenzae (strain PittEE) GN=rplA PE=3 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 1.016e-31
Identity = 68/134 (50.75%), Postives = 90/134 (67.16%), Query Frame = -1
Query:  364 ADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLN 765
            ADLVG +DL EQIK G M FD +IASPD M  V  LG++LGPRGLMPNPK GTVT N+ +A++  K G++ YR DK GI+H   GKA+FSE  L  N  A + ++   KP  AKG++ K   I ++MG  + ++
Sbjct:   92 ADLVGMEDLAEQIKKGEMNFDVVIASPDAMRVVGQLGQVLGPRGLMPNPKVGTVTPNVAEAVKNAKSGQIRYRNDKNGIIHTTIGKANFSEVQLKENLQALLVALNKAKPTTAKGIFIKKVSISTTMGAGVAVD 225          
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_HAEDU (50S ribosomal protein L1 OS=Haemophilus ducreyi GN=rplA PE=3 SV=2)

HSP 1 Score: 137.117 bits (344), Expect = 1.016e-31
Identity = 67/131 (51.15%), Postives = 87/131 (66.41%), Query Frame = -1
Query:  373 ADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSI 765
            ADLVG +DL EQIK G M FD +IASPD M  V  LG++LGPRGLMPNPK GTVT N+ +A++  K G++ YR DK GI+H   GK DFSE  L  N  A + ++   KP  AKG++ K   + ++MG  +
Sbjct:   92 ADLVGMEDLAEQIKKGEMNFDVVIASPDAMRVVGQLGQVLGPRGLMPNPKVGTVTLNVAEAVKNAKSGQIRYRNDKNGIIHTTIGKVDFSEVQLKENLQALLAALNKAKPTTAKGIFIKKVSVSTTMGAGV 222          
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_FUSNN (50S ribosomal protein L1 OS=Fusobacterium nucleatum subsp. nucleatum GN=rplA PE=3 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 1.016e-31
Identity = 64/134 (47.76%), Postives = 91/134 (67.91%), Query Frame = -1
Query:  364 ADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLN 765
            AD  G ++ I QI+ G+++FD +IA+PDMM K+  LGKILG +GLMPNPK+GTVT +I  A+ EFKKGK+ +R DK G +H P GK DF  D +  NF A +  I   KP  +KG Y ++  +  +MGP ++++
Sbjct:   93 ADYAGAEEYINQIQQGWLDFDLVIATPDMMPKIGRLGKILGTKGLMPNPKSGTVTPDIAAAVSEFKKGKLAFRVDKLGSIHAPIGKVDFDLDKIEENFKAFMDQIIRLKPASSKGQYLRTVAVSLTMGPGVKMD 226          
The following BLAST results are available for this feature:
BLAST of CN188884 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL1_MYCS21.016e-3148.0950S ribosomal protein L1 OS=Mycobacterium smegmati... [more]
RL1_MYCMM1.016e-3148.0950S ribosomal protein L1 OS=Mycobacterium marinum ... [more]
RL1_MYCLE1.016e-3148.0950S ribosomal protein L1 OS=Mycobacterium leprae G... [more]
RL1_MYCLB1.016e-3148.0950S ribosomal protein L1 OS=Mycobacterium leprae (... [more]
RL1_MYCGI1.016e-3149.6250S ribosomal protein L1 OS=Mycobacterium gilvum (... [more]
RL1_MESSB1.016e-3149.2550S ribosomal protein L1 OS=Mesorhizobium sp. (str... [more]
RL1_KLEP71.016e-3151.4950S ribosomal protein L1 OS=Klebsiella pneumoniae ... [more]
RL1_HAEIE1.016e-3150.7550S ribosomal protein L1 OS=Haemophilus influenzae... [more]
RL1_HAEDU1.016e-3151.1550S ribosomal protein L1 OS=Haemophilus ducreyi GN... [more]
RL1_FUSNN1.016e-3147.7650S ribosomal protein L1 OS=Fusobacterium nucleatu... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0006P10_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0006P10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188884 ID=CN188884; Name=CN188884; organism=Citrus sinensis; type=EST; length=765bp
TTTTTTTTTTTTTTTTTACAAGAATGGAAAAATATTCAGTAGCCATTCAA
GTAATTTTACAGAAAAAAAAATTGCGGTAATGAACCTGAGAGTGGGCGAT
AATAATAATATCTTTTTCAGTACGGAAAAAAGCCATGCTGTATGCATTTT
TCCTTTTTTTTATTTGCTACAATCTCATCCACATTGATAATCAAGATCTC
CTCACCTCACCATAATTCACTCTCCTACAACTTTTGCCAAGCAGTGGCAA
GCCCTGGCATGGGTATCAAAGAGGCTGACTGAACAGTTAAAGCTATCATT
TACAAAATTTAGTTATGTCATTTAGAAATTTGATGGAAGCTTGTAATCGA
GCATTTCTTTTATGTTTAATCGAATGGAAGGTCCCATTGATGAGCAAATG
TAAGCACTTTTCCAGTACACTCCTTTGGCCCCTTTTGGCTTGTTTGCTTC
AATTGATTTAACAGCAGCAAGGAAGTTTATGAGGAGGTCATCTTCAGAAA
AATCAGCTTTCCCAAAAGGTATGTGGACAATCCCAGTTTTATCTGCTCTA
TATTCAACTTTTCCCTTCTTGAATTCTTCTATGGCCTGAGGTATGTTAGT
TGTAACAGTACCAGCTTTAGGATTTGGCATGAGTCCCCGTGGTCCAAGAA
TTTTTCCTAGGCTGGCAACCTTAACCATCATATCTGGTGAAGCAATTAGC
TTGTCGAACTCCATGAATCCTCCTTTTATTTGTTCAATCAAGTCATCACC
ACCAACCAAATCTGC
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