CN188884
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_FRASC (50S ribosomal protein L1 OS=Frankia sp. (strain CcI3) GN=rplA PE=3 SV=2) HSP 1 Score: 137.117 bits (344), Expect = 1.016e-31 Identity = 63/131 (48.09%), Postives = 88/131 (67.18%), Query Frame = -1 Query: 373 ADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSI 765 AD+VG DDL+ +I+ GF+EFD +A+PD M KV + ++LGPRGLMPNPK GTVT +I +A+ + K GK+ +R DK G +HI GK +F++ L+ N+ A+ I KP AKG Y K ++MGP I Sbjct: 91 ADIVGSDDLVARIQEGFLEFDATVATPDQMAKVGRIARVLGPRGLMPNPKTGTVTLDIGKAVSDIKGGKINFRVDKQGNLHIVIGKTNFTDTQLIENYTVALDEIVRVKPSAAKGRYLKKITFTTTMGPGI 221
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_CITK8 (50S ribosomal protein L1 OS=Citrobacter koseri (strain ATCC BAA-895 / CDC 4225-83 / SGSC4696) GN=rplA PE=3 SV=1) HSP 1 Score: 137.117 bits (344), Expect = 1.016e-31 Identity = 69/134 (51.49%), Postives = 89/134 (66.42%), Query Frame = -1 Query: 364 ADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLN 765 A+LVG +DL EQIK G M FD +IASPD M V LG++LGPRGLMPNPK GTVT N+ +A++ K G+V YR DK GI+H GK DF D L N A + +++ KP AKGVY K I ++MG + ++ Sbjct: 92 AELVGMEDLAEQIKKGEMNFDVVIASPDAMRVVGQLGQVLGPRGLMPNPKVGTVTPNVAEAVKNAKAGQVRYRNDKNGIIHTTIGKVDFDADKLKENLEALLVALKKAKPTQAKGVYIKKVSISTTMGAGVAVD 225
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_BIFA0 (50S ribosomal protein L1 OS=Bifidobacterium animalis subsp. lactis (strain AD011) GN=rplA PE=3 SV=1) HSP 1 Score: 137.117 bits (344), Expect = 1.016e-31 Identity = 66/131 (50.38%), Postives = 89/131 (67.94%), Query Frame = -1 Query: 373 ADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSI 765 AD+VG DDL+E++ GF++FD ++A+PDMM KV LG++LGPRGLMPNPK GTVT ++ +AI++ K GKV++R DK G + FGK FS + L NF A ++ KP KG Y A I S+M P I Sbjct: 92 ADIVGDDDLVEKVANGFLDFDSVVATPDMMGKVGRLGRVLGPRGLMPNPKTGTVTMDVTKAIKDIKGGKVDFRVDKNGNLSFLFGKLSFSAEALDQNFRAVADEVKRLKPATVKGRYITKATISSTMNPGI 222
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_STRSY (50S ribosomal protein L1 OS=Streptococcus suis (strain 05ZYH33) GN=rplA PE=3 SV=1) HSP 1 Score: 136.732 bits (343), Expect = 1.326e-31 Identity = 67/134 (50.00%), Postives = 89/134 (66.42%), Query Frame = -1 Query: 364 ADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLN 765 AD VG DDL+ +I GG+++FD +IA+PDMM V LG++LGPR LMPNPK GTVT ++ +A+EE K GK+ YRADK GIV GK F D L+ NF A + KP AKG Y S +I ++ G I+++ Sbjct: 92 ADFVGEDDLVAKINGGWLDFDVVIATPDMMAVVGRLGRVLGPRNLMPNPKTGTVTMDVAKAVEESKGGKITYRADKAGIVQALIGKVSFDADKLVENFKAFHDVMAKAKPATAKGTYMTSVFITTTQGVGIKVD 225
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_SERP5 (50S ribosomal protein L1 OS=Serratia proteamaculans (strain 568) GN=rplA PE=3 SV=1) HSP 1 Score: 136.732 bits (343), Expect = 1.326e-31 Identity = 68/134 (50.75%), Postives = 89/134 (66.42%), Query Frame = -1 Query: 364 ADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLN 765 A+LVG +DL +QIK G M FD +IASPD M V LG+ILGPRGLMPNPK GTVT N+ +A++ K G+V YR DK GI+H GK DF D L N A + +++ KP AKGVY K + ++MG + ++ Sbjct: 92 AELVGMEDLADQIKKGEMNFDVVIASPDAMRVVGQLGQILGPRGLMPNPKVGTVTPNVAEAVKNAKAGQVRYRNDKNGIIHTTIGKVDFESDKLKENLEALLVALKKAKPSQAKGVYIKKVSLSTTMGAGVAID 225
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_ROSDO (50S ribosomal protein L1 OS=Roseobacter denitrificans (strain ATCC 33942 / OCh 114) GN=rplA PE=3 SV=1) HSP 1 Score: 136.732 bits (343), Expect = 1.326e-31 Identity = 65/137 (47.45%), Postives = 93/137 (67.88%), Query Frame = -1 Query: 355 ADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKE 765 AD+VG +DL+E ++ G +EFD+ IA+PDMM V LGK+LGPR LMPNPK GTVT ++ A++ K G+V+++A+K G+VH GK F E L+ N A V ++ KP GAKG Y K + S+MGP + + I++ Sbjct: 92 ADIVGAEDLMETVQSGKIEFDRCIATPDMMPIVGRLGKVLGPRNLMPNPKVGTVTMDVEAAVKAAKGGEVQFKAEKGGVVHAGVGKLSFDEAKLVENIRAFVGAVSKAKPTGAKGAYMKKIALSSTMGPGVSVAIED 228
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_PHOLL (50S ribosomal protein L1 OS=Photorhabdus luminescens subsp. laumondii GN=rplA PE=3 SV=1) HSP 1 Score: 136.732 bits (343), Expect = 1.326e-31 Identity = 66/134 (49.25%), Postives = 89/134 (66.42%), Query Frame = -1 Query: 364 ADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLN 765 A+LVG +DL E +K G M+FD +IASPD M V LG+ILGPRGLMPNPK GTVT N+ +A++ K G+V YR DK GI+H GK DF D L N A + +++ KP AKG+Y K + ++MG + ++ Sbjct: 92 AELVGMEDLAELVKKGEMDFDVVIASPDAMRVVGQLGQILGPRGLMPNPKVGTVTPNVAEAVQNAKAGQVRYRNDKNGIIHTTIGKVDFDADKLKENLEALLVALKKGKPSSAKGIYIKKVSLSTTMGAGVAID 225
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_METS4 (50S ribosomal protein L1 OS=Methylobacterium sp. (strain 4-46) GN=rplA PE=3 SV=1) HSP 1 Score: 136.732 bits (343), Expect = 1.326e-31 Identity = 66/139 (47.48%), Postives = 92/139 (66.19%), Query Frame = -1 Query: 349 ADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEML 765 AD+VG +DL+E I+GG ++FD+ IA+PDMM V LGK+LGPRGLMPNPK GTVT ++ A+ K G VE+R +K GIVH GK F + ++ N A ++ KP GAKG Y + + S+MGP I+++ +L Sbjct: 92 ADIVGAEDLLETIQGGTIDFDRCIATPDMMPLVGRLGKVLGPRGLMPNPKVGTVTMDVKGAVGAAKGGAVEFRVEKAGIVHAGIGKVSFDDQKIVENARAFADAVARAKPTGAKGTYIQRIAVSSTMGPGIKVDPASVL 230
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_METPB (50S ribosomal protein L1 OS=Methylobacterium populi (strain ATCC BAA-705 / NCIMB 13946 / BJ001) GN=rplA PE=3 SV=1) HSP 1 Score: 136.732 bits (343), Expect = 1.326e-31 Identity = 65/139 (46.76%), Postives = 91/139 (65.47%), Query Frame = -1 Query: 349 ADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEML 765 AD+VG +DL+E ++GG +EFD+ IA+PD+M V LGK+LGPRGLMPNPK GTVT ++ A+ K G VE+R +K GI+H GK F E L+ N A ++ KP GAKG Y + + S+MGP +++ +L Sbjct: 92 ADIVGAEDLLEIVQGGKIEFDRCIATPDLMPLVGRLGKVLGPRGLMPNPKVGTVTMDVKGAVAAAKGGAVEFRVEKAGIIHAGVGKVSFDEQKLVENIKAFADAVAKAKPAGAKGTYIQRIAVTSTMGPGVKVEPSTVL 230
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_METEP (50S ribosomal protein L1 OS=Methylobacterium extorquens (strain PA1) GN=rplA PE=3 SV=1) HSP 1 Score: 136.732 bits (343), Expect = 1.326e-31 Identity = 65/139 (46.76%), Postives = 91/139 (65.47%), Query Frame = -1 Query: 349 ADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEML 765 AD+VG +DL+E ++GG +EFD+ IA+PD+M V LGK+LGPRGLMPNPK GTVT ++ A+ K G VE+R +K GI+H GK F E L+ N A ++ KP GAKG Y + + S+MGP +++ +L Sbjct: 92 ADIVGAEDLLEIVQGGKIEFDRCIATPDLMPLVGRLGKVLGPRGLMPNPKVGTVTMDVKGAVAAAKGGAVEFRVEKAGIIHAGVGKVSFDEQKLVENIKAFADAVAKAKPTGAKGTYIQRIAVTSTMGPGVKVEPSTVL 230 The following BLAST results are available for this feature:
BLAST of CN188884 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >CN188884 ID=CN188884; Name=CN188884; organism=Citrus sinensis; type=EST; length=765bpback to top |