CN188884

Overview
NameCN188884
Unique NameCN188884
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length765
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CN188884_ssr99 microsatellite CN188884_ssr99:99..110. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig2689 contig Csv1_Contig2689:1..766. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_FRASC (50S ribosomal protein L1 OS=Frankia sp. (strain CcI3) GN=rplA PE=3 SV=2)

HSP 1 Score: 137.117 bits (344), Expect = 1.016e-31
Identity = 63/131 (48.09%), Postives = 88/131 (67.18%), Query Frame = -1
Query:  373 ADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSI 765
            AD+VG DDL+ +I+ GF+EFD  +A+PD M KV  + ++LGPRGLMPNPK GTVT +I +A+ + K GK+ +R DK G +HI  GK +F++  L+ N+  A+  I   KP  AKG Y K     ++MGP I
Sbjct:   91 ADIVGSDDLVARIQEGFLEFDATVATPDQMAKVGRIARVLGPRGLMPNPKTGTVTLDIGKAVSDIKGGKINFRVDKQGNLHIVIGKTNFTDTQLIENYTVALDEIVRVKPSAAKGRYLKKITFTTTMGPGI 221          
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_CITK8 (50S ribosomal protein L1 OS=Citrobacter koseri (strain ATCC BAA-895 / CDC 4225-83 / SGSC4696) GN=rplA PE=3 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 1.016e-31
Identity = 69/134 (51.49%), Postives = 89/134 (66.42%), Query Frame = -1
Query:  364 ADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLN 765
            A+LVG +DL EQIK G M FD +IASPD M  V  LG++LGPRGLMPNPK GTVT N+ +A++  K G+V YR DK GI+H   GK DF  D L  N  A + +++  KP  AKGVY K   I ++MG  + ++
Sbjct:   92 AELVGMEDLAEQIKKGEMNFDVVIASPDAMRVVGQLGQVLGPRGLMPNPKVGTVTPNVAEAVKNAKAGQVRYRNDKNGIIHTTIGKVDFDADKLKENLEALLVALKKAKPTQAKGVYIKKVSISTTMGAGVAVD 225          
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_BIFA0 (50S ribosomal protein L1 OS=Bifidobacterium animalis subsp. lactis (strain AD011) GN=rplA PE=3 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 1.016e-31
Identity = 66/131 (50.38%), Postives = 89/131 (67.94%), Query Frame = -1
Query:  373 ADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSI 765
            AD+VG DDL+E++  GF++FD ++A+PDMM KV  LG++LGPRGLMPNPK GTVT ++ +AI++ K GKV++R DK G +   FGK  FS + L  NF A    ++  KP   KG Y   A I S+M P I
Sbjct:   92 ADIVGDDDLVEKVANGFLDFDSVVATPDMMGKVGRLGRVLGPRGLMPNPKTGTVTMDVTKAIKDIKGGKVDFRVDKNGNLSFLFGKLSFSAEALDQNFRAVADEVKRLKPATVKGRYITKATISSTMNPGI 222          
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_STRSY (50S ribosomal protein L1 OS=Streptococcus suis (strain 05ZYH33) GN=rplA PE=3 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 1.326e-31
Identity = 67/134 (50.00%), Postives = 89/134 (66.42%), Query Frame = -1
Query:  364 ADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLN 765
            AD VG DDL+ +I GG+++FD +IA+PDMM  V  LG++LGPR LMPNPK GTVT ++ +A+EE K GK+ YRADK GIV    GK  F  D L+ NF A    +   KP  AKG Y  S +I ++ G  I+++
Sbjct:   92 ADFVGEDDLVAKINGGWLDFDVVIATPDMMAVVGRLGRVLGPRNLMPNPKTGTVTMDVAKAVEESKGGKITYRADKAGIVQALIGKVSFDADKLVENFKAFHDVMAKAKPATAKGTYMTSVFITTTQGVGIKVD 225          
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_SERP5 (50S ribosomal protein L1 OS=Serratia proteamaculans (strain 568) GN=rplA PE=3 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 1.326e-31
Identity = 68/134 (50.75%), Postives = 89/134 (66.42%), Query Frame = -1
Query:  364 ADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLN 765
            A+LVG +DL +QIK G M FD +IASPD M  V  LG+ILGPRGLMPNPK GTVT N+ +A++  K G+V YR DK GI+H   GK DF  D L  N  A + +++  KP  AKGVY K   + ++MG  + ++
Sbjct:   92 AELVGMEDLADQIKKGEMNFDVVIASPDAMRVVGQLGQILGPRGLMPNPKVGTVTPNVAEAVKNAKAGQVRYRNDKNGIIHTTIGKVDFESDKLKENLEALLVALKKAKPSQAKGVYIKKVSLSTTMGAGVAID 225          
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_ROSDO (50S ribosomal protein L1 OS=Roseobacter denitrificans (strain ATCC 33942 / OCh 114) GN=rplA PE=3 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 1.326e-31
Identity = 65/137 (47.45%), Postives = 93/137 (67.88%), Query Frame = -1
Query:  355 ADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKE 765
            AD+VG +DL+E ++ G +EFD+ IA+PDMM  V  LGK+LGPR LMPNPK GTVT ++  A++  K G+V+++A+K G+VH   GK  F E  L+ N  A V ++   KP GAKG Y K   + S+MGP + + I++
Sbjct:   92 ADIVGAEDLMETVQSGKIEFDRCIATPDMMPIVGRLGKVLGPRNLMPNPKVGTVTMDVEAAVKAAKGGEVQFKAEKGGVVHAGVGKLSFDEAKLVENIRAFVGAVSKAKPTGAKGAYMKKIALSSTMGPGVSVAIED 228          
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_PHOLL (50S ribosomal protein L1 OS=Photorhabdus luminescens subsp. laumondii GN=rplA PE=3 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 1.326e-31
Identity = 66/134 (49.25%), Postives = 89/134 (66.42%), Query Frame = -1
Query:  364 ADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLN 765
            A+LVG +DL E +K G M+FD +IASPD M  V  LG+ILGPRGLMPNPK GTVT N+ +A++  K G+V YR DK GI+H   GK DF  D L  N  A + +++  KP  AKG+Y K   + ++MG  + ++
Sbjct:   92 AELVGMEDLAELVKKGEMDFDVVIASPDAMRVVGQLGQILGPRGLMPNPKVGTVTPNVAEAVQNAKAGQVRYRNDKNGIIHTTIGKVDFDADKLKENLEALLVALKKGKPSSAKGIYIKKVSLSTTMGAGVAID 225          
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_METS4 (50S ribosomal protein L1 OS=Methylobacterium sp. (strain 4-46) GN=rplA PE=3 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 1.326e-31
Identity = 66/139 (47.48%), Postives = 92/139 (66.19%), Query Frame = -1
Query:  349 ADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEML 765
            AD+VG +DL+E I+GG ++FD+ IA+PDMM  V  LGK+LGPRGLMPNPK GTVT ++  A+   K G VE+R +K GIVH   GK  F +  ++ N  A   ++   KP GAKG Y +   + S+MGP I+++   +L
Sbjct:   92 ADIVGAEDLLETIQGGTIDFDRCIATPDMMPLVGRLGKVLGPRGLMPNPKVGTVTMDVKGAVGAAKGGAVEFRVEKAGIVHAGIGKVSFDDQKIVENARAFADAVARAKPTGAKGTYIQRIAVSSTMGPGIKVDPASVL 230          
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_METPB (50S ribosomal protein L1 OS=Methylobacterium populi (strain ATCC BAA-705 / NCIMB 13946 / BJ001) GN=rplA PE=3 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 1.326e-31
Identity = 65/139 (46.76%), Postives = 91/139 (65.47%), Query Frame = -1
Query:  349 ADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEML 765
            AD+VG +DL+E ++GG +EFD+ IA+PD+M  V  LGK+LGPRGLMPNPK GTVT ++  A+   K G VE+R +K GI+H   GK  F E  L+ N  A   ++   KP GAKG Y +   + S+MGP +++    +L
Sbjct:   92 ADIVGAEDLLEIVQGGKIEFDRCIATPDLMPLVGRLGKVLGPRGLMPNPKVGTVTMDVKGAVAAAKGGAVEFRVEKAGIIHAGVGKVSFDEQKLVENIKAFADAVAKAKPAGAKGTYIQRIAVTSTMGPGVKVEPSTVL 230          
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_METEP (50S ribosomal protein L1 OS=Methylobacterium extorquens (strain PA1) GN=rplA PE=3 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 1.326e-31
Identity = 65/139 (46.76%), Postives = 91/139 (65.47%), Query Frame = -1
Query:  349 ADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEML 765
            AD+VG +DL+E ++GG +EFD+ IA+PD+M  V  LGK+LGPRGLMPNPK GTVT ++  A+   K G VE+R +K GI+H   GK  F E  L+ N  A   ++   KP GAKG Y +   + S+MGP +++    +L
Sbjct:   92 ADIVGAEDLLEIVQGGKIEFDRCIATPDLMPLVGRLGKVLGPRGLMPNPKVGTVTMDVKGAVAAAKGGAVEFRVEKAGIIHAGVGKVSFDEQKLVENIKAFADAVAKAKPTGAKGTYIQRIAVTSTMGPGVKVEPSTVL 230          
The following BLAST results are available for this feature:
BLAST of CN188884 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL1_FRASC1.016e-3148.0950S ribosomal protein L1 OS=Frankia sp. (strain Cc... [more]
RL1_CITK81.016e-3151.4950S ribosomal protein L1 OS=Citrobacter koseri (st... [more]
RL1_BIFA01.016e-3150.3850S ribosomal protein L1 OS=Bifidobacterium animal... [more]
RL1_STRSY1.326e-3150.0050S ribosomal protein L1 OS=Streptococcus suis (st... [more]
RL1_SERP51.326e-3150.7550S ribosomal protein L1 OS=Serratia proteamaculan... [more]
RL1_ROSDO1.326e-3147.4550S ribosomal protein L1 OS=Roseobacter denitrific... [more]
RL1_PHOLL1.326e-3149.2550S ribosomal protein L1 OS=Photorhabdus luminesce... [more]
RL1_METS41.326e-3147.4850S ribosomal protein L1 OS=Methylobacterium sp. (... [more]
RL1_METPB1.326e-3146.7650S ribosomal protein L1 OS=Methylobacterium popul... [more]
RL1_METEP1.326e-3146.7650S ribosomal protein L1 OS=Methylobacterium extor... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0006P10_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0006P10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188884 ID=CN188884; Name=CN188884; organism=Citrus sinensis; type=EST; length=765bp
TTTTTTTTTTTTTTTTTACAAGAATGGAAAAATATTCAGTAGCCATTCAA
GTAATTTTACAGAAAAAAAAATTGCGGTAATGAACCTGAGAGTGGGCGAT
AATAATAATATCTTTTTCAGTACGGAAAAAAGCCATGCTGTATGCATTTT
TCCTTTTTTTTATTTGCTACAATCTCATCCACATTGATAATCAAGATCTC
CTCACCTCACCATAATTCACTCTCCTACAACTTTTGCCAAGCAGTGGCAA
GCCCTGGCATGGGTATCAAAGAGGCTGACTGAACAGTTAAAGCTATCATT
TACAAAATTTAGTTATGTCATTTAGAAATTTGATGGAAGCTTGTAATCGA
GCATTTCTTTTATGTTTAATCGAATGGAAGGTCCCATTGATGAGCAAATG
TAAGCACTTTTCCAGTACACTCCTTTGGCCCCTTTTGGCTTGTTTGCTTC
AATTGATTTAACAGCAGCAAGGAAGTTTATGAGGAGGTCATCTTCAGAAA
AATCAGCTTTCCCAAAAGGTATGTGGACAATCCCAGTTTTATCTGCTCTA
TATTCAACTTTTCCCTTCTTGAATTCTTCTATGGCCTGAGGTATGTTAGT
TGTAACAGTACCAGCTTTAGGATTTGGCATGAGTCCCCGTGGTCCAAGAA
TTTTTCCTAGGCTGGCAACCTTAACCATCATATCTGGTGAAGCAATTAGC
TTGTCGAACTCCATGAATCCTCCTTTTATTTGTTCAATCAAGTCATCACC
ACCAACCAAATCTGC
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