CN188884
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_METC4 (50S ribosomal protein L1 OS=Methylobacterium chloromethanicum (strain CM4 / NCIMB 13688) GN=rplA PE=3 SV=1) HSP 1 Score: 136.732 bits (343), Expect = 1.326e-31 Identity = 65/139 (46.76%), Postives = 91/139 (65.47%), Query Frame = -1 Query: 349 ADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEML 765 AD+VG +DL+E ++GG +EFD+ IA+PD+M V LGK+LGPRGLMPNPK GTVT ++ A+ K G VE+R +K GI+H GK F E L+ N A ++ KP GAKG Y + + S+MGP +++ +L Sbjct: 92 ADIVGAEDLLEIVQGGKIEFDRCIATPDLMPLVGRLGKVLGPRGLMPNPKVGTVTMDVKGAVAAAKGGAVEFRVEKAGIIHAGVGKVSFDEQKLVENIKAFADAVAKAKPTGAKGTYIQRIAVTSTMGPGVKVEPSTVL 230
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_EDWI9 (50S ribosomal protein L1 OS=Edwardsiella ictaluri (strain 93-146) GN=rplA PE=3 SV=1) HSP 1 Score: 136.732 bits (343), Expect = 1.326e-31 Identity = 69/134 (51.49%), Postives = 90/134 (67.16%), Query Frame = -1 Query: 364 ADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLN 765 ADLVG +DL +QIK G M FD +IASPD M V LG+ILGPRGLMPNPK GTVT N+ +A++ K G+V YR DK GI+H GKA FS + L N A + +++ KP AKGVY K + ++MG + ++ Sbjct: 92 ADLVGMEDLADQIKKGEMNFDVVIASPDAMRVVGQLGQILGPRGLMPNPKVGTVTPNVAEAVKNAKAGQVRYRNDKNGIIHSTIGKASFSAEQLKENLEALMVALKKAKPATAKGVYIKKVCLSTTMGAGVTID 225
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_DICNV (50S ribosomal protein L1 OS=Dichelobacter nodosus (strain VCS1703A) GN=rplA PE=3 SV=1) HSP 1 Score: 136.732 bits (343), Expect = 1.326e-31 Identity = 68/138 (49.28%), Postives = 91/138 (65.94%), Query Frame = -1 Query: 352 ADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEM 765 AD+VG ++L ++IK G +FD +IA P M V LG+ILGPRGLMPNPK GTVT +I A+E K G+V +RADK+GIVH GK DF + LL N A + I +P KGVY + AYI ++MGP I +++ + Sbjct: 92 ADIVGMEELADEIKAGRSDFDVVIAEPAAMRVVGQLGQILGPRGLMPNPKVGTVTADIKAAVENAKAGQVRFRADKSGIVHAMIGKIDFDAEKLLENLHALIAEINKLRPTTIKGVYMQKAYISTTMGPGIAVDVASL 229
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_BRASO (50S ribosomal protein L1 OS=Bradyrhizobium sp. (strain ORS278) GN=rplA PE=3 SV=1) HSP 1 Score: 136.732 bits (343), Expect = 1.326e-31 Identity = 63/133 (47.37%), Postives = 92/133 (69.17%), Query Frame = -1 Query: 367 ADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRL 765 AD+VG +DL+E+++ G ++FD+ IA+PDMM V LGK+LGPRG+MPNPK GTVT ++ A++ K G VE+R +K GI+ GKA F+ED L+ N A ++ KP GAKG Y + + S+MGP +++ Sbjct: 91 ADVVGAEDLVEKVQNGNIDFDRCIATPDMMPLVGRLGKVLGPRGMMPNPKIGTVTMDVTGAVKGAKGGSVEFRVEKAGIIQAGVGKASFTEDKLVENIKALADAVVKAKPAGAKGTYVQRVAVSSTMGPGVKV 223
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_BRASB (50S ribosomal protein L1 OS=Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182) GN=rplA PE=3 SV=1) HSP 1 Score: 136.732 bits (343), Expect = 1.326e-31 Identity = 63/133 (47.37%), Postives = 92/133 (69.17%), Query Frame = -1 Query: 367 ADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRL 765 AD+VG +DL+E+++ G ++FD+ IA+PDMM V LGK+LGPRG+MPNPK GTVT ++ A++ K G VE+R +K GI+ GKA F+ED L+ N A ++ KP GAKG Y + + S+MGP +++ Sbjct: 91 ADVVGAEDLVEKVQNGNIDFDRCIATPDMMPLVGRLGKVLGPRGMMPNPKIGTVTMDVAGAVKGAKGGSVEFRVEKAGIIQAGVGKASFAEDKLVENIKALADAVVKAKPAGAKGTYVQRVAVSSTMGPGVKV 223
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_ACTSZ (50S ribosomal protein L1 OS=Actinobacillus succinogenes (strain ATCC 55618 / 130Z) GN=rplA PE=3 SV=1) HSP 1 Score: 136.732 bits (343), Expect = 1.326e-31 Identity = 65/134 (48.51%), Postives = 91/134 (67.91%), Query Frame = -1 Query: 364 ADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLN 765 ADL+G +DL EQ+K G M+FD +IASPD M V LG+ILGPRGLMPNPK GTVT N+ +A++ K G+V YR DK GI+H GKA FSE+ L N A + ++ +P AKG++ K + ++ G ++++ Sbjct: 92 ADLIGMEDLAEQVKKGEMDFDVVIASPDAMRVVGQLGQILGPRGLMPNPKVGTVTPNVAEAVKNAKSGQVRYRNDKNGIIHTTIGKASFSEEQLKENLQALLAALAKARPTTAKGIFIKKVSVSTTQGAGVQVD 225
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_TREDE (50S ribosomal protein L1 OS=Treponema denticola GN=rplA PE=3 SV=1) HSP 1 Score: 136.346 bits (342), Expect = 1.732e-31 Identity = 66/136 (48.53%), Postives = 88/136 (64.71%), Query Frame = -1 Query: 358 ADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIK 765 A G + IE++KGG+++FD +A+PDMM V LG +LG RGLMPNPK GTVTT+I AI E KKG+VE+RADK G+VH+P GK ++ N A + KP AKG Y +S I S+MGP + ++ K Sbjct: 88 AAYAGSTEYIEKVKGGWLDFDIAVATPDMMKDVGRLGMVLGRRGLMPNPKTGTVTTDIASAINELKKGRVEFRADKGGVVHLPVGKVSMDSSKIVENVQALINETMRKKPADAKGDYIRSVSISSTMGPGVWVDYK 223
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_SHEON (50S ribosomal protein L1 OS=Shewanella oneidensis GN=rplA PE=3 SV=1) HSP 1 Score: 136.346 bits (342), Expect = 1.732e-31 Identity = 69/134 (51.49%), Postives = 89/134 (66.42%), Query Frame = -1 Query: 364 ADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLN 765 A+LVG DDL E+IK G M FD +IASPD M V LG+ILGPRGLMPNPK GTVT N+ +A++ K G+V YR DK GI+H GK DF+ L N A + +++ KP AKGVY K I ++MG + ++ Sbjct: 92 AELVGMDDLAEKIKAGEMNFDVVIASPDAMRVVGMLGQILGPRGLMPNPKTGTVTPNVAEAVKNAKAGQVRYRNDKNGIIHTTIGKVDFTPVQLKENLEALISALKKAKPAVAKGVYVKKVSISTTMGAGVAVD 225
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_SALTY (50S ribosomal protein L1 OS=Salmonella typhimurium GN=rplA PE=3 SV=1) HSP 1 Score: 136.346 bits (342), Expect = 1.732e-31 Identity = 68/134 (50.75%), Postives = 89/134 (66.42%), Query Frame = -1 Query: 364 ADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLN 765 A+LVG +DL +QIK G M FD +IASPD M V LG++LGPRGLMPNPK GTVT N+ +A++ K G+V YR DK GI+H GK DF D L N A + +++ KP AKGVY K I ++MG + ++ Sbjct: 92 AELVGMEDLADQIKKGEMNFDVVIASPDAMRVVGQLGQVLGPRGLMPNPKVGTVTPNVAEAVKNAKAGQVRYRNDKNGIIHTTIGKVDFDADKLKENLEALLVALKKAKPSQAKGVYIKKVSISTTMGAGVAVD 225
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_SALTI (50S ribosomal protein L1 OS=Salmonella typhi GN=rplA PE=3 SV=1) HSP 1 Score: 136.346 bits (342), Expect = 1.732e-31 Identity = 68/134 (50.75%), Postives = 89/134 (66.42%), Query Frame = -1 Query: 364 ADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLN 765 A+LVG +DL +QIK G M FD +IASPD M V LG++LGPRGLMPNPK GTVT N+ +A++ K G+V YR DK GI+H GK DF D L N A + +++ KP AKGVY K I ++MG + ++ Sbjct: 92 AELVGMEDLADQIKKGEMNFDVVIASPDAMRVVGQLGQVLGPRGLMPNPKVGTVTPNVAEAVKNAKAGQVRYRNDKNGIIHTTIGKVDFDADKLKENLEALLVALKKAKPSQAKGVYIKKVSISTTMGAGVAVD 225 The following BLAST results are available for this feature:
BLAST of CN188884 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >CN188884 ID=CN188884; Name=CN188884; organism=Citrus sinensis; type=EST; length=765bpback to top |