CN188884

Overview
NameCN188884
Unique NameCN188884
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length765
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CN188884_ssr99 microsatellite CN188884_ssr99:99..110. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig2689 contig Csv1_Contig2689:1..766. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_METC4 (50S ribosomal protein L1 OS=Methylobacterium chloromethanicum (strain CM4 / NCIMB 13688) GN=rplA PE=3 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 1.326e-31
Identity = 65/139 (46.76%), Postives = 91/139 (65.47%), Query Frame = -1
Query:  349 ADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEML 765
            AD+VG +DL+E ++GG +EFD+ IA+PD+M  V  LGK+LGPRGLMPNPK GTVT ++  A+   K G VE+R +K GI+H   GK  F E  L+ N  A   ++   KP GAKG Y +   + S+MGP +++    +L
Sbjct:   92 ADIVGAEDLLEIVQGGKIEFDRCIATPDLMPLVGRLGKVLGPRGLMPNPKVGTVTMDVKGAVAAAKGGAVEFRVEKAGIIHAGVGKVSFDEQKLVENIKAFADAVAKAKPTGAKGTYIQRIAVTSTMGPGVKVEPSTVL 230          
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_EDWI9 (50S ribosomal protein L1 OS=Edwardsiella ictaluri (strain 93-146) GN=rplA PE=3 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 1.326e-31
Identity = 69/134 (51.49%), Postives = 90/134 (67.16%), Query Frame = -1
Query:  364 ADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLN 765
            ADLVG +DL +QIK G M FD +IASPD M  V  LG+ILGPRGLMPNPK GTVT N+ +A++  K G+V YR DK GI+H   GKA FS + L  N  A + +++  KP  AKGVY K   + ++MG  + ++
Sbjct:   92 ADLVGMEDLADQIKKGEMNFDVVIASPDAMRVVGQLGQILGPRGLMPNPKVGTVTPNVAEAVKNAKAGQVRYRNDKNGIIHSTIGKASFSAEQLKENLEALMVALKKAKPATAKGVYIKKVCLSTTMGAGVTID 225          
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_DICNV (50S ribosomal protein L1 OS=Dichelobacter nodosus (strain VCS1703A) GN=rplA PE=3 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 1.326e-31
Identity = 68/138 (49.28%), Postives = 91/138 (65.94%), Query Frame = -1
Query:  352 ADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEM 765
            AD+VG ++L ++IK G  +FD +IA P  M  V  LG+ILGPRGLMPNPK GTVT +I  A+E  K G+V +RADK+GIVH   GK DF  + LL N  A +  I   +P   KGVY + AYI ++MGP I +++  +
Sbjct:   92 ADIVGMEELADEIKAGRSDFDVVIAEPAAMRVVGQLGQILGPRGLMPNPKVGTVTADIKAAVENAKAGQVRFRADKSGIVHAMIGKIDFDAEKLLENLHALIAEINKLRPTTIKGVYMQKAYISTTMGPGIAVDVASL 229          
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_BRASO (50S ribosomal protein L1 OS=Bradyrhizobium sp. (strain ORS278) GN=rplA PE=3 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 1.326e-31
Identity = 63/133 (47.37%), Postives = 92/133 (69.17%), Query Frame = -1
Query:  367 ADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRL 765
            AD+VG +DL+E+++ G ++FD+ IA+PDMM  V  LGK+LGPRG+MPNPK GTVT ++  A++  K G VE+R +K GI+    GKA F+ED L+ N  A   ++   KP GAKG Y +   + S+MGP +++
Sbjct:   91 ADVVGAEDLVEKVQNGNIDFDRCIATPDMMPLVGRLGKVLGPRGMMPNPKIGTVTMDVTGAVKGAKGGSVEFRVEKAGIIQAGVGKASFTEDKLVENIKALADAVVKAKPAGAKGTYVQRVAVSSTMGPGVKV 223          
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_BRASB (50S ribosomal protein L1 OS=Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182) GN=rplA PE=3 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 1.326e-31
Identity = 63/133 (47.37%), Postives = 92/133 (69.17%), Query Frame = -1
Query:  367 ADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRL 765
            AD+VG +DL+E+++ G ++FD+ IA+PDMM  V  LGK+LGPRG+MPNPK GTVT ++  A++  K G VE+R +K GI+    GKA F+ED L+ N  A   ++   KP GAKG Y +   + S+MGP +++
Sbjct:   91 ADVVGAEDLVEKVQNGNIDFDRCIATPDMMPLVGRLGKVLGPRGMMPNPKIGTVTMDVAGAVKGAKGGSVEFRVEKAGIIQAGVGKASFAEDKLVENIKALADAVVKAKPAGAKGTYVQRVAVSSTMGPGVKV 223          
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_ACTSZ (50S ribosomal protein L1 OS=Actinobacillus succinogenes (strain ATCC 55618 / 130Z) GN=rplA PE=3 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 1.326e-31
Identity = 65/134 (48.51%), Postives = 91/134 (67.91%), Query Frame = -1
Query:  364 ADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLN 765
            ADL+G +DL EQ+K G M+FD +IASPD M  V  LG+ILGPRGLMPNPK GTVT N+ +A++  K G+V YR DK GI+H   GKA FSE+ L  N  A + ++   +P  AKG++ K   + ++ G  ++++
Sbjct:   92 ADLIGMEDLAEQVKKGEMDFDVVIASPDAMRVVGQLGQILGPRGLMPNPKVGTVTPNVAEAVKNAKSGQVRYRNDKNGIIHTTIGKASFSEEQLKENLQALLAALAKARPTTAKGIFIKKVSVSTTQGAGVQVD 225          
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_TREDE (50S ribosomal protein L1 OS=Treponema denticola GN=rplA PE=3 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 1.732e-31
Identity = 66/136 (48.53%), Postives = 88/136 (64.71%), Query Frame = -1
Query:  358 ADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIK 765
            A   G  + IE++KGG+++FD  +A+PDMM  V  LG +LG RGLMPNPK GTVTT+I  AI E KKG+VE+RADK G+VH+P GK       ++ N  A +      KP  AKG Y +S  I S+MGP + ++ K
Sbjct:   88 AAYAGSTEYIEKVKGGWLDFDIAVATPDMMKDVGRLGMVLGRRGLMPNPKTGTVTTDIASAINELKKGRVEFRADKGGVVHLPVGKVSMDSSKIVENVQALINETMRKKPADAKGDYIRSVSISSTMGPGVWVDYK 223          
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_SHEON (50S ribosomal protein L1 OS=Shewanella oneidensis GN=rplA PE=3 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 1.732e-31
Identity = 69/134 (51.49%), Postives = 89/134 (66.42%), Query Frame = -1
Query:  364 ADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLN 765
            A+LVG DDL E+IK G M FD +IASPD M  V  LG+ILGPRGLMPNPK GTVT N+ +A++  K G+V YR DK GI+H   GK DF+   L  N  A + +++  KP  AKGVY K   I ++MG  + ++
Sbjct:   92 AELVGMDDLAEKIKAGEMNFDVVIASPDAMRVVGMLGQILGPRGLMPNPKTGTVTPNVAEAVKNAKAGQVRYRNDKNGIIHTTIGKVDFTPVQLKENLEALISALKKAKPAVAKGVYVKKVSISTTMGAGVAVD 225          
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_SALTY (50S ribosomal protein L1 OS=Salmonella typhimurium GN=rplA PE=3 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 1.732e-31
Identity = 68/134 (50.75%), Postives = 89/134 (66.42%), Query Frame = -1
Query:  364 ADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLN 765
            A+LVG +DL +QIK G M FD +IASPD M  V  LG++LGPRGLMPNPK GTVT N+ +A++  K G+V YR DK GI+H   GK DF  D L  N  A + +++  KP  AKGVY K   I ++MG  + ++
Sbjct:   92 AELVGMEDLADQIKKGEMNFDVVIASPDAMRVVGQLGQVLGPRGLMPNPKVGTVTPNVAEAVKNAKAGQVRYRNDKNGIIHTTIGKVDFDADKLKENLEALLVALKKAKPSQAKGVYIKKVSISTTMGAGVAVD 225          
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_SALTI (50S ribosomal protein L1 OS=Salmonella typhi GN=rplA PE=3 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 1.732e-31
Identity = 68/134 (50.75%), Postives = 89/134 (66.42%), Query Frame = -1
Query:  364 ADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLN 765
            A+LVG +DL +QIK G M FD +IASPD M  V  LG++LGPRGLMPNPK GTVT N+ +A++  K G+V YR DK GI+H   GK DF  D L  N  A + +++  KP  AKGVY K   I ++MG  + ++
Sbjct:   92 AELVGMEDLADQIKKGEMNFDVVIASPDAMRVVGQLGQVLGPRGLMPNPKVGTVTPNVAEAVKNAKAGQVRYRNDKNGIIHTTIGKVDFDADKLKENLEALLVALKKAKPSQAKGVYIKKVSISTTMGAGVAVD 225          
The following BLAST results are available for this feature:
BLAST of CN188884 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL1_METC41.326e-3146.7650S ribosomal protein L1 OS=Methylobacterium chlor... [more]
RL1_EDWI91.326e-3151.4950S ribosomal protein L1 OS=Edwardsiella ictaluri ... [more]
RL1_DICNV1.326e-3149.2850S ribosomal protein L1 OS=Dichelobacter nodosus ... [more]
RL1_BRASO1.326e-3147.3750S ribosomal protein L1 OS=Bradyrhizobium sp. (st... [more]
RL1_BRASB1.326e-3147.3750S ribosomal protein L1 OS=Bradyrhizobium sp. (st... [more]
RL1_ACTSZ1.326e-3148.5150S ribosomal protein L1 OS=Actinobacillus succino... [more]
RL1_TREDE1.732e-3148.5350S ribosomal protein L1 OS=Treponema denticola GN... [more]
RL1_SHEON1.732e-3151.4950S ribosomal protein L1 OS=Shewanella oneidensis ... [more]
RL1_SALTY1.732e-3150.7550S ribosomal protein L1 OS=Salmonella typhimurium... [more]
RL1_SALTI1.732e-3150.7550S ribosomal protein L1 OS=Salmonella typhi GN=rp... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0006P10_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0006P10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188884 ID=CN188884; Name=CN188884; organism=Citrus sinensis; type=EST; length=765bp
TTTTTTTTTTTTTTTTTACAAGAATGGAAAAATATTCAGTAGCCATTCAA
GTAATTTTACAGAAAAAAAAATTGCGGTAATGAACCTGAGAGTGGGCGAT
AATAATAATATCTTTTTCAGTACGGAAAAAAGCCATGCTGTATGCATTTT
TCCTTTTTTTTATTTGCTACAATCTCATCCACATTGATAATCAAGATCTC
CTCACCTCACCATAATTCACTCTCCTACAACTTTTGCCAAGCAGTGGCAA
GCCCTGGCATGGGTATCAAAGAGGCTGACTGAACAGTTAAAGCTATCATT
TACAAAATTTAGTTATGTCATTTAGAAATTTGATGGAAGCTTGTAATCGA
GCATTTCTTTTATGTTTAATCGAATGGAAGGTCCCATTGATGAGCAAATG
TAAGCACTTTTCCAGTACACTCCTTTGGCCCCTTTTGGCTTGTTTGCTTC
AATTGATTTAACAGCAGCAAGGAAGTTTATGAGGAGGTCATCTTCAGAAA
AATCAGCTTTCCCAAAAGGTATGTGGACAATCCCAGTTTTATCTGCTCTA
TATTCAACTTTTCCCTTCTTGAATTCTTCTATGGCCTGAGGTATGTTAGT
TGTAACAGTACCAGCTTTAGGATTTGGCATGAGTCCCCGTGGTCCAAGAA
TTTTTCCTAGGCTGGCAACCTTAACCATCATATCTGGTGAAGCAATTAGC
TTGTCGAACTCCATGAATCCTCCTTTTATTTGTTCAATCAAGTCATCACC
ACCAACCAAATCTGC
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