CN188884
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_SYNP2 (50S ribosomal protein L1 OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) GN=rplA PE=3 SV=1) HSP 1 Score: 172.94 bits (437), Expect = 1.670e-42 Identity = 81/140 (57.86%), Postives = 109/140 (77.86%), Query Frame = -1 Query: 346 ADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEMLD 765 ADLVG ++LIE I+ G M+F+ LIA+PDMM KVA LG+ LGPRGLMP+PK GTVTT++ AI FK GK E+RAD+ GIVH+ FGK+ F+ +DLL+N A ++I+ N+P GAKG YW+S Y+ +SMGPSI+++I + D Sbjct: 92 ADLVGSEELIEDIQKGMMDFEVLIATPDMMPKVARLGRQLGPRGLMPSPKGGTVTTDVATAIAAFKAGKQEFRADRAGIVHVLFGKSSFAAEDLLVNLKALQETIDRNRPSGAKGRYWRSIYVSASMGPSIQVDINALRD 231
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_SYNJA (50S ribosomal protein L1 OS=Synechococcus sp. (strain JA-3-3Ab) GN=rplA PE=3 SV=1) HSP 1 Score: 172.555 bits (436), Expect = 2.181e-42 Identity = 82/143 (57.34%), Postives = 111/143 (77.62%), Query Frame = -1 Query: 337 ADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEMLDYKL 765 AD VG +DLIE+I G ++FD LIA+PD+M +VA LG++LGPRGLMP+PK GTVT ++ QAI+EFK GK+EYRADKTGIVH+ FGK F + LL N A +SI+ N+P GAKG YW++ ++C++MGPSI ++I + + KL Sbjct: 92 ADRVGFEDLIEEIGKGVIDFDLLIATPDVMPQVAKLGRLLGPRGLMPSPKGGTVTMDLAQAIKEFKAGKLEYRADKTGIVHLIFGKCKFPVEALLENLKAVQESIDRNRPPGAKGKYWRALHVCATMGPSIEVDINALRELKL 234
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RK1_ODOSI (50S ribosomal protein L1, chloroplastic OS=Odontella sinensis GN=rpl1 PE=3 SV=1) HSP 1 Score: 171.4 bits (433), Expect = 4.860e-42 Identity = 79/139 (56.83%), Postives = 106/139 (76.26%), Query Frame = -1 Query: 349 ADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEML 765 AD VG DDLIE+I G + FD LIA+PDMM K+A LG++LGP+GLMP+PK+GTV+T + + EFKKGK EY+ADK G+VH+ FGK++F+ L+ N A KSIE N+P G KG Y+KS +IC++MGPSI+L++ L Sbjct: 92 ADRVGSDDLIEEISQGNISFDLLIATPDMMPKLAKLGRVLGPKGLMPSPKSGTVSTTLTATLSEFKKGKFEYKADKAGVVHVSFGKSNFTHSQLMENLTALYKSIEQNRPSGVKGKYFKSLFICTTMGPSIQLDLNIFL 230
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_SYNJB (50S ribosomal protein L1 OS=Synechococcus sp. GN=rplA PE=3 SV=1) HSP 1 Score: 170.629 bits (431), Expect = 8.289e-42 Identity = 81/143 (56.64%), Postives = 110/143 (76.92%), Query Frame = -1 Query: 337 ADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEMLDYKL 765 AD VG +DLIE+I G M+FD LIA+PD+M +VA LG++LGPRGLMP+PK GTVT ++ QAI+EFK GK+EYRAD+TGIVH+ FGK F + LL N A +SI+ N+P GAKG YW++ ++ ++MGPSI ++I + + KL Sbjct: 92 ADRVGYEDLIEEISKGMMDFDLLIATPDVMPQVAKLGRLLGPRGLMPSPKGGTVTMDLAQAIKEFKAGKLEYRADRTGIVHLIFGKCKFPVEALLENLKAVQESIDRNRPSGAKGKYWRTLHVSATMGPSIEVDINALRELKL 234
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_PROM4 (50S ribosomal protein L1 OS=Prochlorococcus marinus (strain MIT 9211) GN=rplA PE=3 SV=1) HSP 1 Score: 169.474 bits (428), Expect = 1.847e-41 Identity = 81/140 (57.86%), Postives = 105/140 (75.00%), Query Frame = -1 Query: 346 ADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEMLD 765 ADL G ++L++ I G M FD LIA+PDMM KVA LG++LGPRGLMPNPK GTVT ++ AI+EFK GK+E+RADK GI+H+ FGKA F+ D LL N ++I+ NKP GAKG +WK+ YI S+MGPSI ++I + D Sbjct: 91 ADLAGEEELVDSISKGEMGFDLLIATPDMMPKVAKLGRVLGPRGLMPNPKTGTVTADLVGAIKEFKAGKLEFRADKAGIIHVRFGKASFNADALLENLKTLQETIDRNKPSGAKGRFWKTLYITSTMGPSIEVDIAALQD 230
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_ANASK (50S ribosomal protein L1 OS=Anaeromyxobacter sp. (strain K) GN=rplA PE=3 SV=1) HSP 1 Score: 167.548 bits (423), Expect = 7.017e-41 Identity = 80/138 (57.97%), Postives = 106/138 (76.81%), Query Frame = -1 Query: 352 ADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEM 765 AD+VG +DL E+I+GGFM+FDKLIA+PDMM V LGKILGPRGLMPNPK GTVT ++ +A++E K GKVE+R +K GIVH+PFGKA F D L NF A ++ I KP+ AKGVY K+ + ++MGP I++++ E+ Sbjct: 92 ADIVGAEDLAEKIQGGFMDFDKLIATPDMMGVVGRLGKILGPRGLMPNPKVGTVTMDLARAVKEQKAGKVEFRVEKAGIVHVPFGKASFDPDKLKANFSAIMEVIYKAKPQTAKGVYVKNVTLSTTMGPGIKVDLAEL 229
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_ANAD2 (50S ribosomal protein L1 OS=Anaeromyxobacter dehalogenans (strain 2CP-1 / ATCC BAA-258) GN=rplA PE=3 SV=1) HSP 1 Score: 167.548 bits (423), Expect = 7.017e-41 Identity = 80/138 (57.97%), Postives = 106/138 (76.81%), Query Frame = -1 Query: 352 ADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEM 765 AD+VG +DL E+I+GGFM+FDKLIA+PDMM V LGKILGPRGLMPNPK GTVT ++ +A++E K GKVE+R +K GIVH+PFGKA F D L NF A ++ I KP+ AKGVY K+ + ++MGP I++++ E+ Sbjct: 92 ADIVGAEDLAEKIQGGFMDFDKLIATPDMMGVVGRLGKILGPRGLMPNPKVGTVTMDLARAVKEQKAGKVEFRVEKAGIVHVPFGKASFDPDKLKANFSAIMEVIYKAKPQTAKGVYVKNVTLSTTMGPGIKVDLAEL 229
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_ANADE (50S ribosomal protein L1 OS=Anaeromyxobacter dehalogenans (strain 2CP-C) GN=rplA PE=3 SV=1) HSP 1 Score: 167.162 bits (422), Expect = 9.165e-41 Identity = 80/138 (57.97%), Postives = 106/138 (76.81%), Query Frame = -1 Query: 352 ADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEM 765 AD+VG +DL E+I+GGFM+FDKLIA+PDMM V LGKILGPRGLMPNPK GTVT ++ +A++E K GKVE+R +K GIVH+PFGKA F + L NF A ++ I KP+ AKGVY K+ + ++MGP I+L++ E+ Sbjct: 92 ADIVGAEDLAEKIQGGFMDFDKLIATPDMMGVVGRLGKILGPRGLMPNPKVGTVTMDLARAVKEQKAGKVEFRVEKAGIVHVPFGKASFDPEKLKANFSAIMEVIYKAKPQTAKGVYVKNVTLSTTMGPGIKLDLAEL 229
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_ANADF (50S ribosomal protein L1 OS=Anaeromyxobacter sp. (strain Fw109-5) GN=rplA PE=3 SV=1) HSP 1 Score: 164.466 bits (415), Expect = 5.940e-40 Identity = 76/138 (55.07%), Postives = 106/138 (76.81%), Query Frame = -1 Query: 352 ADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEM 765 AD+VG +DL E+++GGFM+FDK++A+PDMM V LGK+LGPRGLMPNPK GTV+ +I +A++E K GKVE+R +K GIVH+PFGKA F + L NF A ++ I KP+ AKGVY K+ + ++MGP I+L++ E+ Sbjct: 92 ADIVGAEDLAEKVQGGFMDFDKVLATPDMMGVVGRLGKVLGPRGLMPNPKVGTVSADIARAVKEQKAGKVEFRVEKAGIVHVPFGKASFEPEKLKANFSAIMEIIYKAKPQTAKGVYVKNVTLSTTMGPGIKLDLSEL 229
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RK1_PHATR (50S ribosomal protein L1, chloroplastic OS=Phaeodactylum tricornutum GN=rpl1 PE=3 SV=1) HSP 1 Score: 164.466 bits (415), Expect = 5.940e-40 Identity = 75/135 (55.56%), Postives = 106/135 (78.52%), Query Frame = -1 Query: 358 DLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIK 762 D+VG D+LI QI G + FD LIA+P+MM K+A LG++LGP+GLMP+PK+GTVT+ + + EFKKGK EY+ADKTGIVH+ FGK++F+ + L+ N A +SIE N+P G KG Y+KS IC++MGPS++L+++ Sbjct: 93 DIVGNDELIAQITQGQINFDLLIATPNMMPKLAKLGRMLGPKGLMPSPKSGTVTSTLQSTLTEFKKGKFEYKADKTGIVHVNFGKSNFTNEQLVENLKALYQSIEQNRPSGVKGKYFKSVSICTTMGPSVKLDLE 227 The following BLAST results are available for this feature:
BLAST of CN188884 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >CN188884 ID=CN188884; Name=CN188884; organism=Citrus sinensis; type=EST; length=765bpback to top |