CN188884
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_SALA4 (50S ribosomal protein L1 OS=Salmonella agona (strain SL483) GN=rplA PE=3 SV=1) HSP 1 Score: 136.346 bits (342), Expect = 1.732e-31 Identity = 68/134 (50.75%), Postives = 89/134 (66.42%), Query Frame = -1 Query: 364 ADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLN 765 A+LVG +DL +QIK G M FD +IASPD M V LG++LGPRGLMPNPK GTVT N+ +A++ K G+V YR DK GI+H GK DF D L N A + +++ KP AKGVY K I ++MG + ++ Sbjct: 92 AELVGMEDLADQIKKGEMNFDVVIASPDAMRVVGQLGQVLGPRGLMPNPKVGTVTPNVAEAVKNAKAGQVRYRNDKNGIIHTTIGKVDFDADKLKENLEALLVALKKAKPSQAKGVYIKKVSISTTMGAGVAVD 225
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_RHIL3 (50S ribosomal protein L1 OS=Rhizobium leguminosarum bv. viciae (strain 3841) GN=rplA PE=3 SV=1) HSP 1 Score: 136.346 bits (342), Expect = 1.732e-31 Identity = 67/133 (50.38%), Postives = 89/133 (66.92%), Query Frame = -1 Query: 367 ADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRL 765 AD+VG +DL+E ++GG +EFD+ IA+PDMM V LGK+LGPRG+MPNPK GTVT ++ A++ K G VE+R +K GIVH GKA F L N A ++ KP GAKG Y K I S+MGP +++ Sbjct: 90 ADIVGAEDLVEIVQGGKIEFDRCIATPDMMPLVGRLGKVLGPRGMMPNPKVGTVTMDVAGAVKASKGGAVEFRVEKAGIVHAGIGKASFDAKALEENIRAFADAVIKAKPAGAKGNYVKRVAISSTMGPGVKI 222
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_METNO (50S ribosomal protein L1 OS=Methylobacterium nodulans (strain ORS2060 / LMG 21967) GN=rplA PE=3 SV=1) HSP 1 Score: 136.346 bits (342), Expect = 1.732e-31 Identity = 66/139 (47.48%), Postives = 91/139 (65.47%), Query Frame = -1 Query: 349 ADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEML 765 AD+VG +DL+E I+GG + FD+ IA+PDMM V LGK+LGPRGLMPNPK GTVT ++ A+ K G VE+R +K GIVH GK F + ++ N A ++ KP GAKG Y + + S+MGP I+++ +L Sbjct: 92 ADIVGAEDLLETIQGGTINFDRCIATPDMMPLVGRLGKVLGPRGLMPNPKVGTVTMDVKGAVGAAKGGAVEFRVEKAGIVHAGIGKVSFDDQKIVENARAFADAVARAKPSGAKGTYIQRIAVSSTMGPGIKVDPASVL 230
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_MESFL (50S ribosomal protein L1 OS=Mesoplasma florum GN=rplA PE=3 SV=1) HSP 1 Score: 136.346 bits (342), Expect = 1.732e-31 Identity = 65/136 (47.79%), Postives = 96/136 (70.59%), Query Frame = -1 Query: 361 ADLVGGDDLIEQI-KGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNI 765 AD VGG++LI +I K + EFD ++A+P+MM K+ ++GK+LGP+GLMPNPK GTVT ++ +AI+E KKGK+E+RADK G +H GKA F+ + L NF + ++ KP+ KG Y + I ++MGP I++ I Sbjct: 91 ADFVGGEELITKIQKENWFEFDVIVATPEMMAKLGAIGKVLGPKGLMPNPKTGTVTMDVAKAIDEIKKGKIEFRADKEGNIHTIIGKASFTAEQLKENFTTILNEMKRVKPQTVKGDYIINITISTTMGPGIKVEI 226
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_CLAMS (50S ribosomal protein L1 OS=Clavibacter michiganensis subsp. sepedonicus (strain ATCC 33113 / JCM 9667) GN=rplA PE=3 SV=1) HSP 1 Score: 136.346 bits (342), Expect = 1.732e-31 Identity = 64/138 (46.38%), Postives = 93/138 (67.39%), Query Frame = -1 Query: 352 ADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEM 765 AD VGGD+LIE++ GG+ FD +++P++M KV LGK+LGPRGLMPNPK GTVT ++ +A+ + K GK+E+R DK VH GKA FS + L N AA++ I KP +KG Y + A + ++ GP I +++ + Sbjct: 91 ADEVGGDELIEKVAGGYTSFDSAVSTPELMGKVGRLGKVLGPRGLMPNPKTGTVTPDVARAVSDIKGGKIEFRVDKHANVHFVVGKASFSPEQLSENVGAALEEIVRLKPSSSKGRYVQKATVSTTFGPGIPVDVNSI 228
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_CLAM3 (50S ribosomal protein L1 OS=Clavibacter michiganensis subsp. michiganensis (strain NCPPB 382) GN=rplA PE=3 SV=1) HSP 1 Score: 136.346 bits (342), Expect = 1.732e-31 Identity = 64/138 (46.38%), Postives = 93/138 (67.39%), Query Frame = -1 Query: 352 ADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEM 765 AD VGGD+LIE++ GG+ FD +++P++M KV LGK+LGPRGLMPNPK GTVT ++ +A+ + K GK+E+R DK VH GKA FS + L N AA++ I KP +KG Y + A + ++ GP I +++ + Sbjct: 91 ADEVGGDELIEKVAGGYTSFDSAVSTPELMGKVGRLGKVLGPRGLMPNPKTGTVTPDVARAVSDIKGGKIEFRVDKHANVHFVVGKASFSPEQLSENVGAALEEIVRLKPSSSKGRYVQKATVSTTFGPGIPVDVNSI 228
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_CHLMU (50S ribosomal protein L1 OS=Chlamydia muridarum GN=rplA PE=3 SV=1) HSP 1 Score: 136.346 bits (342), Expect = 1.732e-31 Identity = 63/139 (45.32%), Postives = 95/139 (68.35%), Query Frame = -1 Query: 349 ADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEML 765 AD VG DDL+E+IKGG+++FD +A+PDMM +V LGK+LGPR LMP PK+GTVTT++ +AI E +KGK+E++AD+ G+ ++ K F + N A ++ KP AKG Y + I S+MGP + ++ +E++ Sbjct: 92 ADFVGSDDLVEKIKGGWVDFDVAVATPDMMREVGKLGKVLGPRNLMPTPKSGTVTTDVVKAIAELRKGKIEFKADRAGVCNVGVAKLSFDSAQIKENIEALCAALVKAKPATAKGQYLVNFTISSTMGPGVTVDTRELI 230
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_BRAJA (50S ribosomal protein L1 OS=Bradyrhizobium japonicum GN=rplA PE=3 SV=1) HSP 1 Score: 136.346 bits (342), Expect = 1.732e-31 Identity = 63/133 (47.37%), Postives = 92/133 (69.17%), Query Frame = -1 Query: 367 ADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRL 765 AD+VG +DL+E+++ G ++FD+ IA+PDMM V LGK+LGPRGLMPNPK GTVT ++ A++ K G VE+R +K GI+ GKA FSE+ L+ N A ++ KP G+KG Y + + S+MGP +++ Sbjct: 91 ADVVGAEDLVEKVQNGSIDFDRCIATPDMMPLVGRLGKVLGPRGLMPNPKIGTVTMDVTGAVKGAKGGSVEFRVEKAGILQAGVGKASFSEEKLVENIKALADAVSKAKPAGSKGTYIQRVAVSSTMGPGVKV 223
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_BIFLO (50S ribosomal protein L1 OS=Bifidobacterium longum GN=rplA PE=3 SV=1) HSP 1 Score: 136.346 bits (342), Expect = 1.732e-31 Identity = 64/131 (48.85%), Postives = 88/131 (67.18%), Query Frame = -1 Query: 373 ADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSI 765 AD+VG DDLI +++GGF++FD ++A+PDMM KV LG++LGPRGLMPNPK GTVT ++ +A+++ K GK+E+R DK G + GK F E L NF A ++ KP KG Y A I S+M P + Sbjct: 92 ADIVGDDDLIAKVQGGFLDFDAVVATPDMMGKVGRLGRVLGPRGLMPNPKTGTVTMDVTKAVKDIKGGKIEFRVDKNGNLSFLIGKMSFDESALDENFKAVADEVKRLKPSTVKGRYLTKATITSTMNPGV 222
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_BIFLD (50S ribosomal protein L1 OS=Bifidobacterium longum (strain DJO10A) GN=rplA PE=3 SV=1) HSP 1 Score: 136.346 bits (342), Expect = 1.732e-31 Identity = 64/131 (48.85%), Postives = 88/131 (67.18%), Query Frame = -1 Query: 373 ADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSI 765 AD+VG DDLI +++GGF++FD ++A+PDMM KV LG++LGPRGLMPNPK GTVT ++ +A+++ K GK+E+R DK G + GK F E L NF A ++ KP KG Y A I S+M P + Sbjct: 92 ADIVGDDDLIAKVQGGFLDFDAVVATPDMMGKVGRLGRVLGPRGLMPNPKTGTVTMDVTKAVKDIKGGKIEFRVDKNGNLSFLIGKMSFDESALDENFKAVADEVKRLKPSTVKGRYLTKATITSTMNPGV 222 The following BLAST results are available for this feature:
BLAST of CN188884 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >CN188884 ID=CN188884; Name=CN188884; organism=Citrus sinensis; type=EST; length=765bpback to top |