CN188884

Overview
NameCN188884
Unique NameCN188884
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length765
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CN188884_ssr99 microsatellite CN188884_ssr99:99..110. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig2689 contig Csv1_Contig2689:1..766. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_SALA4 (50S ribosomal protein L1 OS=Salmonella agona (strain SL483) GN=rplA PE=3 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 1.732e-31
Identity = 68/134 (50.75%), Postives = 89/134 (66.42%), Query Frame = -1
Query:  364 ADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLN 765
            A+LVG +DL +QIK G M FD +IASPD M  V  LG++LGPRGLMPNPK GTVT N+ +A++  K G+V YR DK GI+H   GK DF  D L  N  A + +++  KP  AKGVY K   I ++MG  + ++
Sbjct:   92 AELVGMEDLADQIKKGEMNFDVVIASPDAMRVVGQLGQVLGPRGLMPNPKVGTVTPNVAEAVKNAKAGQVRYRNDKNGIIHTTIGKVDFDADKLKENLEALLVALKKAKPSQAKGVYIKKVSISTTMGAGVAVD 225          
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_RHIL3 (50S ribosomal protein L1 OS=Rhizobium leguminosarum bv. viciae (strain 3841) GN=rplA PE=3 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 1.732e-31
Identity = 67/133 (50.38%), Postives = 89/133 (66.92%), Query Frame = -1
Query:  367 ADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRL 765
            AD+VG +DL+E ++GG +EFD+ IA+PDMM  V  LGK+LGPRG+MPNPK GTVT ++  A++  K G VE+R +K GIVH   GKA F    L  N  A   ++   KP GAKG Y K   I S+MGP +++
Sbjct:   90 ADIVGAEDLVEIVQGGKIEFDRCIATPDMMPLVGRLGKVLGPRGMMPNPKVGTVTMDVAGAVKASKGGAVEFRVEKAGIVHAGIGKASFDAKALEENIRAFADAVIKAKPAGAKGNYVKRVAISSTMGPGVKI 222          
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_METNO (50S ribosomal protein L1 OS=Methylobacterium nodulans (strain ORS2060 / LMG 21967) GN=rplA PE=3 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 1.732e-31
Identity = 66/139 (47.48%), Postives = 91/139 (65.47%), Query Frame = -1
Query:  349 ADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEML 765
            AD+VG +DL+E I+GG + FD+ IA+PDMM  V  LGK+LGPRGLMPNPK GTVT ++  A+   K G VE+R +K GIVH   GK  F +  ++ N  A   ++   KP GAKG Y +   + S+MGP I+++   +L
Sbjct:   92 ADIVGAEDLLETIQGGTINFDRCIATPDMMPLVGRLGKVLGPRGLMPNPKVGTVTMDVKGAVGAAKGGAVEFRVEKAGIVHAGIGKVSFDDQKIVENARAFADAVARAKPSGAKGTYIQRIAVSSTMGPGIKVDPASVL 230          
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_MESFL (50S ribosomal protein L1 OS=Mesoplasma florum GN=rplA PE=3 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 1.732e-31
Identity = 65/136 (47.79%), Postives = 96/136 (70.59%), Query Frame = -1
Query:  361 ADLVGGDDLIEQI-KGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNI 765
            AD VGG++LI +I K  + EFD ++A+P+MM K+ ++GK+LGP+GLMPNPK GTVT ++ +AI+E KKGK+E+RADK G +H   GKA F+ + L  NF   +  ++  KP+  KG Y  +  I ++MGP I++ I
Sbjct:   91 ADFVGGEELITKIQKENWFEFDVIVATPEMMAKLGAIGKVLGPKGLMPNPKTGTVTMDVAKAIDEIKKGKIEFRADKEGNIHTIIGKASFTAEQLKENFTTILNEMKRVKPQTVKGDYIINITISTTMGPGIKVEI 226          
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_CLAMS (50S ribosomal protein L1 OS=Clavibacter michiganensis subsp. sepedonicus (strain ATCC 33113 / JCM 9667) GN=rplA PE=3 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 1.732e-31
Identity = 64/138 (46.38%), Postives = 93/138 (67.39%), Query Frame = -1
Query:  352 ADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEM 765
            AD VGGD+LIE++ GG+  FD  +++P++M KV  LGK+LGPRGLMPNPK GTVT ++ +A+ + K GK+E+R DK   VH   GKA FS + L  N  AA++ I   KP  +KG Y + A + ++ GP I +++  +
Sbjct:   91 ADEVGGDELIEKVAGGYTSFDSAVSTPELMGKVGRLGKVLGPRGLMPNPKTGTVTPDVARAVSDIKGGKIEFRVDKHANVHFVVGKASFSPEQLSENVGAALEEIVRLKPSSSKGRYVQKATVSTTFGPGIPVDVNSI 228          
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_CLAM3 (50S ribosomal protein L1 OS=Clavibacter michiganensis subsp. michiganensis (strain NCPPB 382) GN=rplA PE=3 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 1.732e-31
Identity = 64/138 (46.38%), Postives = 93/138 (67.39%), Query Frame = -1
Query:  352 ADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEM 765
            AD VGGD+LIE++ GG+  FD  +++P++M KV  LGK+LGPRGLMPNPK GTVT ++ +A+ + K GK+E+R DK   VH   GKA FS + L  N  AA++ I   KP  +KG Y + A + ++ GP I +++  +
Sbjct:   91 ADEVGGDELIEKVAGGYTSFDSAVSTPELMGKVGRLGKVLGPRGLMPNPKTGTVTPDVARAVSDIKGGKIEFRVDKHANVHFVVGKASFSPEQLSENVGAALEEIVRLKPSSSKGRYVQKATVSTTFGPGIPVDVNSI 228          
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_CHLMU (50S ribosomal protein L1 OS=Chlamydia muridarum GN=rplA PE=3 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 1.732e-31
Identity = 63/139 (45.32%), Postives = 95/139 (68.35%), Query Frame = -1
Query:  349 ADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEML 765
            AD VG DDL+E+IKGG+++FD  +A+PDMM +V  LGK+LGPR LMP PK+GTVTT++ +AI E +KGK+E++AD+ G+ ++   K  F    +  N  A   ++   KP  AKG Y  +  I S+MGP + ++ +E++
Sbjct:   92 ADFVGSDDLVEKIKGGWVDFDVAVATPDMMREVGKLGKVLGPRNLMPTPKSGTVTTDVVKAIAELRKGKIEFKADRAGVCNVGVAKLSFDSAQIKENIEALCAALVKAKPATAKGQYLVNFTISSTMGPGVTVDTRELI 230          
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_BRAJA (50S ribosomal protein L1 OS=Bradyrhizobium japonicum GN=rplA PE=3 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 1.732e-31
Identity = 63/133 (47.37%), Postives = 92/133 (69.17%), Query Frame = -1
Query:  367 ADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRL 765
            AD+VG +DL+E+++ G ++FD+ IA+PDMM  V  LGK+LGPRGLMPNPK GTVT ++  A++  K G VE+R +K GI+    GKA FSE+ L+ N  A   ++   KP G+KG Y +   + S+MGP +++
Sbjct:   91 ADVVGAEDLVEKVQNGSIDFDRCIATPDMMPLVGRLGKVLGPRGLMPNPKIGTVTMDVTGAVKGAKGGSVEFRVEKAGILQAGVGKASFSEEKLVENIKALADAVSKAKPAGSKGTYIQRVAVSSTMGPGVKV 223          
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_BIFLO (50S ribosomal protein L1 OS=Bifidobacterium longum GN=rplA PE=3 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 1.732e-31
Identity = 64/131 (48.85%), Postives = 88/131 (67.18%), Query Frame = -1
Query:  373 ADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSI 765
            AD+VG DDLI +++GGF++FD ++A+PDMM KV  LG++LGPRGLMPNPK GTVT ++ +A+++ K GK+E+R DK G +    GK  F E  L  NF A    ++  KP   KG Y   A I S+M P +
Sbjct:   92 ADIVGDDDLIAKVQGGFLDFDAVVATPDMMGKVGRLGRVLGPRGLMPNPKTGTVTMDVTKAVKDIKGGKIEFRVDKNGNLSFLIGKMSFDESALDENFKAVADEVKRLKPSTVKGRYLTKATITSTMNPGV 222          
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_BIFLD (50S ribosomal protein L1 OS=Bifidobacterium longum (strain DJO10A) GN=rplA PE=3 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 1.732e-31
Identity = 64/131 (48.85%), Postives = 88/131 (67.18%), Query Frame = -1
Query:  373 ADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSI 765
            AD+VG DDLI +++GGF++FD ++A+PDMM KV  LG++LGPRGLMPNPK GTVT ++ +A+++ K GK+E+R DK G +    GK  F E  L  NF A    ++  KP   KG Y   A I S+M P +
Sbjct:   92 ADIVGDDDLIAKVQGGFLDFDAVVATPDMMGKVGRLGRVLGPRGLMPNPKTGTVTMDVTKAVKDIKGGKIEFRVDKNGNLSFLIGKMSFDESALDENFKAVADEVKRLKPSTVKGRYLTKATITSTMNPGV 222          
The following BLAST results are available for this feature:
BLAST of CN188884 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL1_SALA41.732e-3150.7550S ribosomal protein L1 OS=Salmonella agona (stra... [more]
RL1_RHIL31.732e-3150.3850S ribosomal protein L1 OS=Rhizobium leguminosaru... [more]
RL1_METNO1.732e-3147.4850S ribosomal protein L1 OS=Methylobacterium nodul... [more]
RL1_MESFL1.732e-3147.7950S ribosomal protein L1 OS=Mesoplasma florum GN=r... [more]
RL1_CLAMS1.732e-3146.3850S ribosomal protein L1 OS=Clavibacter michiganen... [more]
RL1_CLAM31.732e-3146.3850S ribosomal protein L1 OS=Clavibacter michiganen... [more]
RL1_CHLMU1.732e-3145.3250S ribosomal protein L1 OS=Chlamydia muridarum GN... [more]
RL1_BRAJA1.732e-3147.3750S ribosomal protein L1 OS=Bradyrhizobium japonic... [more]
RL1_BIFLO1.732e-3148.8550S ribosomal protein L1 OS=Bifidobacterium longum... [more]
RL1_BIFLD1.732e-3148.8550S ribosomal protein L1 OS=Bifidobacterium longum... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0006P10_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0006P10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188884 ID=CN188884; Name=CN188884; organism=Citrus sinensis; type=EST; length=765bp
TTTTTTTTTTTTTTTTTACAAGAATGGAAAAATATTCAGTAGCCATTCAA
GTAATTTTACAGAAAAAAAAATTGCGGTAATGAACCTGAGAGTGGGCGAT
AATAATAATATCTTTTTCAGTACGGAAAAAAGCCATGCTGTATGCATTTT
TCCTTTTTTTTATTTGCTACAATCTCATCCACATTGATAATCAAGATCTC
CTCACCTCACCATAATTCACTCTCCTACAACTTTTGCCAAGCAGTGGCAA
GCCCTGGCATGGGTATCAAAGAGGCTGACTGAACAGTTAAAGCTATCATT
TACAAAATTTAGTTATGTCATTTAGAAATTTGATGGAAGCTTGTAATCGA
GCATTTCTTTTATGTTTAATCGAATGGAAGGTCCCATTGATGAGCAAATG
TAAGCACTTTTCCAGTACACTCCTTTGGCCCCTTTTGGCTTGTTTGCTTC
AATTGATTTAACAGCAGCAAGGAAGTTTATGAGGAGGTCATCTTCAGAAA
AATCAGCTTTCCCAAAAGGTATGTGGACAATCCCAGTTTTATCTGCTCTA
TATTCAACTTTTCCCTTCTTGAATTCTTCTATGGCCTGAGGTATGTTAGT
TGTAACAGTACCAGCTTTAGGATTTGGCATGAGTCCCCGTGGTCCAAGAA
TTTTTCCTAGGCTGGCAACCTTAACCATCATATCTGGTGAAGCAATTAGC
TTGTCGAACTCCATGAATCCTCCTTTTATTTGTTCAATCAAGTCATCACC
ACCAACCAAATCTGC
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