CN188884

Overview
NameCN188884
Unique NameCN188884
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length765
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CN188884_ssr99 microsatellite CN188884_ssr99:99..110. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig2689 contig Csv1_Contig2689:1..766. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_SHISS (50S ribosomal protein L1 OS=Shigella sonnei (strain Ss046) GN=rplA PE=3 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 2.263e-31
Identity = 68/134 (50.75%), Postives = 89/134 (66.42%), Query Frame = -1
Query:  364 ADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLN 765
            A+LVG +DL +QIK G M FD +IASPD M  V  LG++LGPRGLMPNPK GTVT N+ +A++  K G+V YR DK GI+H   GK DF  D L  N  A + +++  KP  AKGVY K   I ++MG  + ++
Sbjct:   92 AELVGMEDLADQIKKGEMNFDVVIASPDAMRVVGQLGQVLGPRGLMPNPKVGTVTPNVAEAVKNAKAGQVRYRNDKNGIIHTTIGKVDFDADKLKENLEALLVALKKAKPTQAKGVYIKKVSISTTMGAGVAVD 225          
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_SHIFL (50S ribosomal protein L1 OS=Shigella flexneri GN=rplA PE=3 SV=2)

HSP 1 Score: 135.961 bits (341), Expect = 2.263e-31
Identity = 68/134 (50.75%), Postives = 89/134 (66.42%), Query Frame = -1
Query:  364 ADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLN 765
            A+LVG +DL +QIK G M FD +IASPD M  V  LG++LGPRGLMPNPK GTVT N+ +A++  K G+V YR DK GI+H   GK DF  D L  N  A + +++  KP  AKGVY K   I ++MG  + ++
Sbjct:   92 AELVGMEDLADQIKKGEMNFDVVIASPDAMRVVGQLGQVLGPRGLMPNPKVGTVTPNVAEAVKNAKAGQVRYRNDKNGIIHTTIGKVDFDADKLKENLEALLVALKKAKPTQAKGVYIKKVSISTTMGAGVAVD 225          
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_SHIF8 (50S ribosomal protein L1 OS=Shigella flexneri serotype 5b (strain 8401) GN=rplA PE=3 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 2.263e-31
Identity = 68/134 (50.75%), Postives = 89/134 (66.42%), Query Frame = -1
Query:  364 ADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLN 765
            A+LVG +DL +QIK G M FD +IASPD M  V  LG++LGPRGLMPNPK GTVT N+ +A++  K G+V YR DK GI+H   GK DF  D L  N  A + +++  KP  AKGVY K   I ++MG  + ++
Sbjct:   92 AELVGMEDLADQIKKGEMNFDVVIASPDAMRVVGQLGQVLGPRGLMPNPKVGTVTPNVAEAVKNAKAGQVRYRNDKNGIIHTTIGKVDFDADKLKENLEALLVALKKAKPTQAKGVYIKKVSISTTMGAGVAVD 225          
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_SHIDS (50S ribosomal protein L1 OS=Shigella dysenteriae serotype 1 (strain Sd197) GN=rplA PE=3 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 2.263e-31
Identity = 68/134 (50.75%), Postives = 89/134 (66.42%), Query Frame = -1
Query:  364 ADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLN 765
            A+LVG +DL +QIK G M FD +IASPD M  V  LG++LGPRGLMPNPK GTVT N+ +A++  K G+V YR DK GI+H   GK DF  D L  N  A + +++  KP  AKGVY K   I ++MG  + ++
Sbjct:   92 AELVGMEDLADQIKKGEMNFDVVIASPDAMRVVGQLGQVLGPRGLMPNPKVGTVTPNVAEAVKNAKAGQVRYRNDKNGIIHTTIGKVDFDADKLKENLEALLVALKKAKPTQAKGVYIKKVSISTTMGAGVAVD 225          
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_SHIBS (50S ribosomal protein L1 OS=Shigella boydii serotype 4 (strain Sb227) GN=rplA PE=3 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 2.263e-31
Identity = 68/134 (50.75%), Postives = 89/134 (66.42%), Query Frame = -1
Query:  364 ADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLN 765
            A+LVG +DL +QIK G M FD +IASPD M  V  LG++LGPRGLMPNPK GTVT N+ +A++  K G+V YR DK GI+H   GK DF  D L  N  A + +++  KP  AKGVY K   I ++MG  + ++
Sbjct:   92 AELVGMEDLADQIKKGEMNFDVVIASPDAMRVVGQLGQVLGPRGLMPNPKVGTVTPNVAEAVKNAKAGQVRYRNDKNGIIHTTIGKVDFDADKLKENLEALLVALKKAKPTQAKGVYIKKVSISTTMGAGVAVD 225          
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_SHIB3 (50S ribosomal protein L1 OS=Shigella boydii serotype 18 (strain CDC 3083-94 / BS512) GN=rplA PE=3 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 2.263e-31
Identity = 68/134 (50.75%), Postives = 89/134 (66.42%), Query Frame = -1
Query:  364 ADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLN 765
            A+LVG +DL +QIK G M FD +IASPD M  V  LG++LGPRGLMPNPK GTVT N+ +A++  K G+V YR DK GI+H   GK DF  D L  N  A + +++  KP  AKGVY K   I ++MG  + ++
Sbjct:   92 AELVGMEDLADQIKKGEMNFDVVIASPDAMRVVGQLGQVLGPRGLMPNPKVGTVTPNVAEAVKNAKAGQVRYRNDKNGIIHTTIGKVDFDADKLKENLEALLVALKKAKPTQAKGVYIKKVSISTTMGAGVAVD 225          
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_RUBXD (50S ribosomal protein L1 OS=Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129) GN=rplA PE=3 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 2.263e-31
Identity = 66/135 (48.89%), Postives = 92/135 (68.15%), Query Frame = -1
Query:  364 ADLVGGDDLIEQIKG-GFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLN 765
            AD+VG ++L  +I+  GFM+FD  +A+PD M  V  LG ILGPRGLMPNPK+GTVT ++ +A+EE K+GKVEYR D+ GI+H   GK  F  D LL N+ A  + +   +P   KG Y KS    ++MGPS++++
Sbjct:   90 ADIVGSEELAARIQNEGFMDFDVAVATPDQMSIVGRLGPILGPRGLMPNPKSGTVTMDVGRAVEEIKRGKVEYRVDRYGIIHTVLGKKSFDVDSLLENYFALREELVRARPAAVKGRYIKSVAFTTTMGPSVKVD 224          
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_RHOPA (50S ribosomal protein L1 OS=Rhodopseudomonas palustris GN=rplA PE=1 SV=3)

HSP 1 Score: 135.961 bits (341), Expect = 2.263e-31
Identity = 63/133 (47.37%), Postives = 89/133 (66.92%), Query Frame = -1
Query:  367 ADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRL 765
            AD+VG +DL+EQ++ G + FD+ IA+PDMM  V  LGK+LGPRG+MPNPK GTVT ++  A++  K G VE+R +K GI+    GKA F  D L+ N  A   ++   KP GAKG Y +   + S+MGP +++
Sbjct:   91 ADVVGAEDLVEQVQAGNINFDRCIATPDMMPLVGRLGKVLGPRGMMPNPKIGTVTMDVAGAVKGAKGGSVEFRVEKAGIIQAGVGKASFDADKLVENIKALADAVNKAKPSGAKGTYIQRVAVSSTMGPGVKV 223          
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_NITEC (50S ribosomal protein L1 OS=Nitrosomonas eutropha (strain C91) GN=rplA PE=3 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 2.263e-31
Identity = 67/134 (50.00%), Postives = 91/134 (67.91%), Query Frame = -1
Query:  364 ADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLN 765
            AD+VG +DL EQ+K   + FD  IASPD M  V  LG+ILGPRGLMPNPK GTVT ++  A++  K G++++RADK GIVH   G+A FS D L  N +A V ++  +KP  +KGVY +   I S+MG  +R++
Sbjct:   92 ADIVGLEDLAEQVKANEINFDLAIASPDSMRIVGQLGQILGPRGLMPNPKVGTVTLDVASAVKNAKAGQIQFRADKAGIVHCTVGRASFSVDALRENIIALVDALNKSKPATSKGVYLRKMAISSTMGAGVRVD 225          
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_KLEP3 (50S ribosomal protein L1 OS=Klebsiella pneumoniae (strain 342) GN=rplA PE=3 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 2.263e-31
Identity = 68/134 (50.75%), Postives = 89/134 (66.42%), Query Frame = -1
Query:  364 ADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLN 765
            A+LVG +DL +QIK G M FD +IASPD M  V  LG++LGPRGLMPNPK GTVT N+ +A++  K G+V YR DK GI+H   GK DF  D L  N  A + +++  KP  AKGVY K   I ++MG  + ++
Sbjct:   92 AELVGMEDLADQIKKGEMNFDVVIASPDAMRVVGQLGQVLGPRGLMPNPKVGTVTPNVAEAVKNAKAGQVRYRNDKNGIIHTTIGKVDFDADKLKENLEALLVALKKAKPTQAKGVYIKKVSISTTMGAGVAVD 225          
The following BLAST results are available for this feature:
BLAST of CN188884 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL1_SHISS2.263e-3150.7550S ribosomal protein L1 OS=Shigella sonnei (strai... [more]
RL1_SHIFL2.263e-3150.7550S ribosomal protein L1 OS=Shigella flexneri GN=r... [more]
RL1_SHIF82.263e-3150.7550S ribosomal protein L1 OS=Shigella flexneri sero... [more]
RL1_SHIDS2.263e-3150.7550S ribosomal protein L1 OS=Shigella dysenteriae s... [more]
RL1_SHIBS2.263e-3150.7550S ribosomal protein L1 OS=Shigella boydii seroty... [more]
RL1_SHIB32.263e-3150.7550S ribosomal protein L1 OS=Shigella boydii seroty... [more]
RL1_RUBXD2.263e-3148.8950S ribosomal protein L1 OS=Rubrobacter xylanophil... [more]
RL1_RHOPA2.263e-3147.3750S ribosomal protein L1 OS=Rhodopseudomonas palus... [more]
RL1_NITEC2.263e-3150.0050S ribosomal protein L1 OS=Nitrosomonas eutropha ... [more]
RL1_KLEP32.263e-3150.7550S ribosomal protein L1 OS=Klebsiella pneumoniae ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0006P10_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0006P10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188884 ID=CN188884; Name=CN188884; organism=Citrus sinensis; type=EST; length=765bp
TTTTTTTTTTTTTTTTTACAAGAATGGAAAAATATTCAGTAGCCATTCAA
GTAATTTTACAGAAAAAAAAATTGCGGTAATGAACCTGAGAGTGGGCGAT
AATAATAATATCTTTTTCAGTACGGAAAAAAGCCATGCTGTATGCATTTT
TCCTTTTTTTTATTTGCTACAATCTCATCCACATTGATAATCAAGATCTC
CTCACCTCACCATAATTCACTCTCCTACAACTTTTGCCAAGCAGTGGCAA
GCCCTGGCATGGGTATCAAAGAGGCTGACTGAACAGTTAAAGCTATCATT
TACAAAATTTAGTTATGTCATTTAGAAATTTGATGGAAGCTTGTAATCGA
GCATTTCTTTTATGTTTAATCGAATGGAAGGTCCCATTGATGAGCAAATG
TAAGCACTTTTCCAGTACACTCCTTTGGCCCCTTTTGGCTTGTTTGCTTC
AATTGATTTAACAGCAGCAAGGAAGTTTATGAGGAGGTCATCTTCAGAAA
AATCAGCTTTCCCAAAAGGTATGTGGACAATCCCAGTTTTATCTGCTCTA
TATTCAACTTTTCCCTTCTTGAATTCTTCTATGGCCTGAGGTATGTTAGT
TGTAACAGTACCAGCTTTAGGATTTGGCATGAGTCCCCGTGGTCCAAGAA
TTTTTCCTAGGCTGGCAACCTTAACCATCATATCTGGTGAAGCAATTAGC
TTGTCGAACTCCATGAATCCTCCTTTTATTTGTTCAATCAAGTCATCACC
ACCAACCAAATCTGC
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