CN188884
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_ECO24 (50S ribosomal protein L1 OS=Escherichia coli O139:H28 (strain E24377A / ETEC) GN=rplA PE=3 SV=1) HSP 1 Score: 135.961 bits (341), Expect = 2.263e-31 Identity = 68/134 (50.75%), Postives = 89/134 (66.42%), Query Frame = -1 Query: 364 ADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLN 765 A+LVG +DL +QIK G M FD +IASPD M V LG++LGPRGLMPNPK GTVT N+ +A++ K G+V YR DK GI+H GK DF D L N A + +++ KP AKGVY K I ++MG + ++ Sbjct: 92 AELVGMEDLADQIKKGEMNFDVVIASPDAMRVVGQLGQVLGPRGLMPNPKVGTVTPNVAEAVKNAKAGQVRYRNDKNGIIHTTIGKVDFDADKLKENLEALLVALKKAKPTQAKGVYIKKVSISTTMGAGVAVD 225
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_DESAH (50S ribosomal protein L1 OS=Desulfobacterium autotrophicum (strain ATCC 43914 / DSM 3382 / HRM2) GN=rplA PE=3 SV=1) HSP 1 Score: 135.961 bits (341), Expect = 2.263e-31 Identity = 60/134 (44.78%), Postives = 91/134 (67.91%), Query Frame = -1 Query: 364 ADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLN 765 AD + ++ + +IK G+ FDK IA+PDMM V LG++LGPRGLMPN K GTVT ++ +A+EE K GK+++R +K GI+H+P GK F + L+ N A + I A KP +KG Y K+ + ++MGP ++++ Sbjct: 92 ADFIADEETVAKIKDGWFGFDKAIATPDMMGTVGKLGRVLGPRGLMPNAKTGTVTFDVAKAVEELKAGKIDFRVEKAGIIHVPVGKVSFGPEKLVENVKAFINMIIALKPASSKGTYLKTITVSTTMGPGVKID 225
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_BIFLI (50S ribosomal protein L1 OS=Bifidobacterium longum subsp. infantis (strain ATCC 15697 / DSM 20088 / NCTC 11817 / S12) GN=rplA PE=3 SV=1) HSP 1 Score: 135.961 bits (341), Expect = 2.263e-31 Identity = 64/131 (48.85%), Postives = 88/131 (67.18%), Query Frame = -1 Query: 373 ADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSI 765 AD+VG DDLI +++GGF++FD ++A+PDMM KV LG++LGPRGLMPNPK GTVT ++ +A+++ K GK+E+R DK G + GK F E L NF A ++ KP KG Y A I S+M P + Sbjct: 92 ADIVGDDDLIAKVQGGFLDFDAVVATPDMMGKVGRLGRVLGPRGLMPNPKTGTVTMDVTKAVKDIKGGKIEFRVDKNGNLSFLIGKMSFDESALDENFKAVADEVKRLKPATVKGRYLTKATITSTMNPGV 222
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_BEII9 (50S ribosomal protein L1 OS=Beijerinckia indica subsp. indica (strain ATCC 9039 / DSM 1715 / NCIB 8712) GN=rplA PE=3 SV=1) HSP 1 Score: 135.961 bits (341), Expect = 2.263e-31 Identity = 64/134 (47.76%), Postives = 91/134 (67.91%), Query Frame = -1 Query: 364 ADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLN 765 AD+VG +DL+ ++GG + FD+ IA+PDMM V LGK+LGPRGLMPNPK GTVT ++ A++ K G VE+R +K GI+ GKA F + LL N A V ++ KP+GAKG Y + + S+MGP ++++ Sbjct: 92 ADIVGAEDLVATVQGGTIAFDRCIATPDMMPLVGRLGKVLGPRGLMPNPKVGTVTMDVAGAVKASKGGAVEFRVEKAGIIQGSVGKASFETEKLLENIAAFVDAVAKAKPQGAKGTYIQRVALSSTMGPGVKID 225
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_BACV8 (50S ribosomal protein L1 OS=Bacteroides vulgatus (strain ATCC 8482 / DSM 1447 / NCTC 11154) GN=rplA PE=3 SV=1) HSP 1 Score: 135.961 bits (341), Expect = 2.263e-31 Identity = 63/136 (46.32%), Postives = 94/136 (69.12%), Query Frame = -1 Query: 358 ADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIK 765 AD VG D+ IE+IKGG+ + D +I P +M K+ +LG++LGPRGLMPNPK+GTVT ++ +A++E K+GK++++ DK+GIVH GK F+ D + N + +I KP AKG Y KS Y+ S+M I+++ K Sbjct: 92 ADYVGLDEYIEKIKGGWTDIDVIITMPSIMGKIGALGRVLGPRGLMPNPKSGTVTMDVAKAVKEVKQGKIDFKVDKSGIVHTSIGKVSFTADQIRDNAKEFIATIIKLKPSSAKGTYIKSIYLSSTMSKGIKIDPK 227
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_AGRRK (50S ribosomal protein L1 OS=Agrobacterium radiobacter (strain K84 / ATCC BAA-868) GN=rplA PE=3 SV=1) HSP 1 Score: 135.961 bits (341), Expect = 2.263e-31 Identity = 66/135 (48.89%), Postives = 90/135 (66.67%), Query Frame = -1 Query: 361 ADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNI 765 AD+VG ++L+E ++GG ++FD+ IA+PDMM V LGK+LGPRG+MPNPK GTVT ++ A+E K G VE+R +K GIVH GKA F L N A ++ KP GAKG Y K I S+MGP +++ + Sbjct: 90 ADIVGAEELVEIVQGGKIDFDRCIATPDMMPLVGRLGKVLGPRGMMPNPKVGTVTMDVKGAVEASKGGAVEFRVEKAGIVHAGIGKASFDAKALEENIRAFADAVIKAKPAGAKGNYVKRVAISSTMGPGVKIEL 224
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_VIBVY (50S ribosomal protein L1 OS=Vibrio vulnificus (strain YJ016) GN=rplA PE=3 SV=1) HSP 1 Score: 135.576 bits (340), Expect = 2.955e-31 Identity = 66/134 (49.25%), Postives = 88/134 (65.67%), Query Frame = -1 Query: 364 ADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLN 765 AD+VG +DL EQ+K G M FD ++ASPD M V LG ILGPRGLMPNPK GTVT N+ +A++ K G+V YR DK GI+H GK DFS + + N A + +++ KP AKG Y K I ++MG + ++ Sbjct: 92 ADIVGMEDLAEQVKKGEMNFDVVVASPDAMRVVGQLGTILGPRGLMPNPKVGTVTPNVAEAVKNAKAGQVRYRNDKNGIIHTTIGKVDFSAEQIKENLEALLVALKKAKPSSAKGSYLKKVSISTTMGAGVAVD 225
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_VIBVU (50S ribosomal protein L1 OS=Vibrio vulnificus GN=rplA PE=3 SV=1) HSP 1 Score: 135.576 bits (340), Expect = 2.955e-31 Identity = 66/134 (49.25%), Postives = 88/134 (65.67%), Query Frame = -1 Query: 364 ADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLN 765 AD+VG +DL EQ+K G M FD ++ASPD M V LG ILGPRGLMPNPK GTVT N+ +A++ K G+V YR DK GI+H GK DFS + + N A + +++ KP AKG Y K I ++MG + ++ Sbjct: 92 ADIVGMEDLAEQVKKGEMNFDVVVASPDAMRVVGQLGTILGPRGLMPNPKVGTVTPNVAEAVKNAKAGQVRYRNDKNGIIHTTIGKVDFSAEQIKENLEALLVALKKAKPSSAKGSYLKKVSISTTMGAGVAVD 225
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_STRTD (50S ribosomal protein L1 OS=Streptococcus thermophilus (strain ATCC BAA-491 / LMD-9) GN=rplA PE=3 SV=1) HSP 1 Score: 135.576 bits (340), Expect = 2.955e-31 Identity = 65/134 (48.51%), Postives = 92/134 (68.66%), Query Frame = -1 Query: 364 ADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLN 765 AD VG D+L+++I GG+++FD ++A+PDMM V LG++LGPR LMPNPK GTVT ++ +A+EE K GK+ YRADK G V GK F + L+ NF A +I+ KP AKGVY + I ++ GP I+++ Sbjct: 92 ADFVGEDELVDKINGGWLDFDVVVATPDMMAIVGRLGRVLGPRNLMPNPKTGTVTMDVAKAVEESKGGKITYRADKAGNVQAIIGKVSFEAEKLVENFKAFNDAIQKAKPATAKGVYITNLSITTTQGPGIKVD 225
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_STRT2 (50S ribosomal protein L1 OS=Streptococcus thermophilus (strain ATCC BAA-250 / LMG 18311) GN=rplA PE=3 SV=2) HSP 1 Score: 135.576 bits (340), Expect = 2.955e-31 Identity = 65/134 (48.51%), Postives = 92/134 (68.66%), Query Frame = -1 Query: 364 ADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLN 765 AD VG D+L+++I GG+++FD ++A+PDMM V LG++LGPR LMPNPK GTVT ++ +A+EE K GK+ YRADK G V GK F + L+ NF A +I+ KP AKGVY + I ++ GP I+++ Sbjct: 92 ADFVGEDELVDKINGGWLDFDVVVATPDMMAIVGRLGRVLGPRNLMPNPKTGTVTMDVAKAVEESKGGKITYRADKAGNVQAIIGKVSFEAEKLVENFKAFNDAIQKAKPATAKGVYITNLSITTTQGPGIKVD 225 The following BLAST results are available for this feature:
BLAST of CN188884 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >CN188884 ID=CN188884; Name=CN188884; organism=Citrus sinensis; type=EST; length=765bpback to top |