CN188884

Overview
NameCN188884
Unique NameCN188884
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length765
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CN188884_ssr99 microsatellite CN188884_ssr99:99..110. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig2689 contig Csv1_Contig2689:1..766. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_ECO24 (50S ribosomal protein L1 OS=Escherichia coli O139:H28 (strain E24377A / ETEC) GN=rplA PE=3 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 2.263e-31
Identity = 68/134 (50.75%), Postives = 89/134 (66.42%), Query Frame = -1
Query:  364 ADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLN 765
            A+LVG +DL +QIK G M FD +IASPD M  V  LG++LGPRGLMPNPK GTVT N+ +A++  K G+V YR DK GI+H   GK DF  D L  N  A + +++  KP  AKGVY K   I ++MG  + ++
Sbjct:   92 AELVGMEDLADQIKKGEMNFDVVIASPDAMRVVGQLGQVLGPRGLMPNPKVGTVTPNVAEAVKNAKAGQVRYRNDKNGIIHTTIGKVDFDADKLKENLEALLVALKKAKPTQAKGVYIKKVSISTTMGAGVAVD 225          
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_DESAH (50S ribosomal protein L1 OS=Desulfobacterium autotrophicum (strain ATCC 43914 / DSM 3382 / HRM2) GN=rplA PE=3 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 2.263e-31
Identity = 60/134 (44.78%), Postives = 91/134 (67.91%), Query Frame = -1
Query:  364 ADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLN 765
            AD +  ++ + +IK G+  FDK IA+PDMM  V  LG++LGPRGLMPN K GTVT ++ +A+EE K GK+++R +K GI+H+P GK  F  + L+ N  A +  I A KP  +KG Y K+  + ++MGP ++++
Sbjct:   92 ADFIADEETVAKIKDGWFGFDKAIATPDMMGTVGKLGRVLGPRGLMPNAKTGTVTFDVAKAVEELKAGKIDFRVEKAGIIHVPVGKVSFGPEKLVENVKAFINMIIALKPASSKGTYLKTITVSTTMGPGVKID 225          
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_BIFLI (50S ribosomal protein L1 OS=Bifidobacterium longum subsp. infantis (strain ATCC 15697 / DSM 20088 / NCTC 11817 / S12) GN=rplA PE=3 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 2.263e-31
Identity = 64/131 (48.85%), Postives = 88/131 (67.18%), Query Frame = -1
Query:  373 ADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSI 765
            AD+VG DDLI +++GGF++FD ++A+PDMM KV  LG++LGPRGLMPNPK GTVT ++ +A+++ K GK+E+R DK G +    GK  F E  L  NF A    ++  KP   KG Y   A I S+M P +
Sbjct:   92 ADIVGDDDLIAKVQGGFLDFDAVVATPDMMGKVGRLGRVLGPRGLMPNPKTGTVTMDVTKAVKDIKGGKIEFRVDKNGNLSFLIGKMSFDESALDENFKAVADEVKRLKPATVKGRYLTKATITSTMNPGV 222          
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_BEII9 (50S ribosomal protein L1 OS=Beijerinckia indica subsp. indica (strain ATCC 9039 / DSM 1715 / NCIB 8712) GN=rplA PE=3 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 2.263e-31
Identity = 64/134 (47.76%), Postives = 91/134 (67.91%), Query Frame = -1
Query:  364 ADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLN 765
            AD+VG +DL+  ++GG + FD+ IA+PDMM  V  LGK+LGPRGLMPNPK GTVT ++  A++  K G VE+R +K GI+    GKA F  + LL N  A V ++   KP+GAKG Y +   + S+MGP ++++
Sbjct:   92 ADIVGAEDLVATVQGGTIAFDRCIATPDMMPLVGRLGKVLGPRGLMPNPKVGTVTMDVAGAVKASKGGAVEFRVEKAGIIQGSVGKASFETEKLLENIAAFVDAVAKAKPQGAKGTYIQRVALSSTMGPGVKID 225          
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_BACV8 (50S ribosomal protein L1 OS=Bacteroides vulgatus (strain ATCC 8482 / DSM 1447 / NCTC 11154) GN=rplA PE=3 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 2.263e-31
Identity = 63/136 (46.32%), Postives = 94/136 (69.12%), Query Frame = -1
Query:  358 ADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIK 765
            AD VG D+ IE+IKGG+ + D +I  P +M K+ +LG++LGPRGLMPNPK+GTVT ++ +A++E K+GK++++ DK+GIVH   GK  F+ D +  N    + +I   KP  AKG Y KS Y+ S+M   I+++ K
Sbjct:   92 ADYVGLDEYIEKIKGGWTDIDVIITMPSIMGKIGALGRVLGPRGLMPNPKSGTVTMDVAKAVKEVKQGKIDFKVDKSGIVHTSIGKVSFTADQIRDNAKEFIATIIKLKPSSAKGTYIKSIYLSSTMSKGIKIDPK 227          
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_AGRRK (50S ribosomal protein L1 OS=Agrobacterium radiobacter (strain K84 / ATCC BAA-868) GN=rplA PE=3 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 2.263e-31
Identity = 66/135 (48.89%), Postives = 90/135 (66.67%), Query Frame = -1
Query:  361 ADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNI 765
            AD+VG ++L+E ++GG ++FD+ IA+PDMM  V  LGK+LGPRG+MPNPK GTVT ++  A+E  K G VE+R +K GIVH   GKA F    L  N  A   ++   KP GAKG Y K   I S+MGP +++ +
Sbjct:   90 ADIVGAEELVEIVQGGKIDFDRCIATPDMMPLVGRLGKVLGPRGMMPNPKVGTVTMDVKGAVEASKGGAVEFRVEKAGIVHAGIGKASFDAKALEENIRAFADAVIKAKPAGAKGNYVKRVAISSTMGPGVKIEL 224          
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_VIBVY (50S ribosomal protein L1 OS=Vibrio vulnificus (strain YJ016) GN=rplA PE=3 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 2.955e-31
Identity = 66/134 (49.25%), Postives = 88/134 (65.67%), Query Frame = -1
Query:  364 ADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLN 765
            AD+VG +DL EQ+K G M FD ++ASPD M  V  LG ILGPRGLMPNPK GTVT N+ +A++  K G+V YR DK GI+H   GK DFS + +  N  A + +++  KP  AKG Y K   I ++MG  + ++
Sbjct:   92 ADIVGMEDLAEQVKKGEMNFDVVVASPDAMRVVGQLGTILGPRGLMPNPKVGTVTPNVAEAVKNAKAGQVRYRNDKNGIIHTTIGKVDFSAEQIKENLEALLVALKKAKPSSAKGSYLKKVSISTTMGAGVAVD 225          
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_VIBVU (50S ribosomal protein L1 OS=Vibrio vulnificus GN=rplA PE=3 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 2.955e-31
Identity = 66/134 (49.25%), Postives = 88/134 (65.67%), Query Frame = -1
Query:  364 ADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLN 765
            AD+VG +DL EQ+K G M FD ++ASPD M  V  LG ILGPRGLMPNPK GTVT N+ +A++  K G+V YR DK GI+H   GK DFS + +  N  A + +++  KP  AKG Y K   I ++MG  + ++
Sbjct:   92 ADIVGMEDLAEQVKKGEMNFDVVVASPDAMRVVGQLGTILGPRGLMPNPKVGTVTPNVAEAVKNAKAGQVRYRNDKNGIIHTTIGKVDFSAEQIKENLEALLVALKKAKPSSAKGSYLKKVSISTTMGAGVAVD 225          
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_STRTD (50S ribosomal protein L1 OS=Streptococcus thermophilus (strain ATCC BAA-491 / LMD-9) GN=rplA PE=3 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 2.955e-31
Identity = 65/134 (48.51%), Postives = 92/134 (68.66%), Query Frame = -1
Query:  364 ADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLN 765
            AD VG D+L+++I GG+++FD ++A+PDMM  V  LG++LGPR LMPNPK GTVT ++ +A+EE K GK+ YRADK G V    GK  F  + L+ NF A   +I+  KP  AKGVY  +  I ++ GP I+++
Sbjct:   92 ADFVGEDELVDKINGGWLDFDVVVATPDMMAIVGRLGRVLGPRNLMPNPKTGTVTMDVAKAVEESKGGKITYRADKAGNVQAIIGKVSFEAEKLVENFKAFNDAIQKAKPATAKGVYITNLSITTTQGPGIKVD 225          
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_STRT2 (50S ribosomal protein L1 OS=Streptococcus thermophilus (strain ATCC BAA-250 / LMG 18311) GN=rplA PE=3 SV=2)

HSP 1 Score: 135.576 bits (340), Expect = 2.955e-31
Identity = 65/134 (48.51%), Postives = 92/134 (68.66%), Query Frame = -1
Query:  364 ADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLN 765
            AD VG D+L+++I GG+++FD ++A+PDMM  V  LG++LGPR LMPNPK GTVT ++ +A+EE K GK+ YRADK G V    GK  F  + L+ NF A   +I+  KP  AKGVY  +  I ++ GP I+++
Sbjct:   92 ADFVGEDELVDKINGGWLDFDVVVATPDMMAIVGRLGRVLGPRNLMPNPKTGTVTMDVAKAVEESKGGKITYRADKAGNVQAIIGKVSFEAEKLVENFKAFNDAIQKAKPATAKGVYITNLSITTTQGPGIKVD 225          
The following BLAST results are available for this feature:
BLAST of CN188884 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL1_ECO242.263e-3150.7550S ribosomal protein L1 OS=Escherichia coli O139:... [more]
RL1_DESAH2.263e-3144.7850S ribosomal protein L1 OS=Desulfobacterium autot... [more]
RL1_BIFLI2.263e-3148.8550S ribosomal protein L1 OS=Bifidobacterium longum... [more]
RL1_BEII92.263e-3147.7650S ribosomal protein L1 OS=Beijerinckia indica su... [more]
RL1_BACV82.263e-3146.3250S ribosomal protein L1 OS=Bacteroides vulgatus (... [more]
RL1_AGRRK2.263e-3148.8950S ribosomal protein L1 OS=Agrobacterium radiobac... [more]
RL1_VIBVY2.955e-3149.2550S ribosomal protein L1 OS=Vibrio vulnificus (str... [more]
RL1_VIBVU2.955e-3149.2550S ribosomal protein L1 OS=Vibrio vulnificus GN=r... [more]
RL1_STRTD2.955e-3148.5150S ribosomal protein L1 OS=Streptococcus thermoph... [more]
RL1_STRT22.955e-3148.5150S ribosomal protein L1 OS=Streptococcus thermoph... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS05_0006P10_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0006P10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188884 ID=CN188884; Name=CN188884; organism=Citrus sinensis; type=EST; length=765bp
TTTTTTTTTTTTTTTTTACAAGAATGGAAAAATATTCAGTAGCCATTCAA
GTAATTTTACAGAAAAAAAAATTGCGGTAATGAACCTGAGAGTGGGCGAT
AATAATAATATCTTTTTCAGTACGGAAAAAAGCCATGCTGTATGCATTTT
TCCTTTTTTTTATTTGCTACAATCTCATCCACATTGATAATCAAGATCTC
CTCACCTCACCATAATTCACTCTCCTACAACTTTTGCCAAGCAGTGGCAA
GCCCTGGCATGGGTATCAAAGAGGCTGACTGAACAGTTAAAGCTATCATT
TACAAAATTTAGTTATGTCATTTAGAAATTTGATGGAAGCTTGTAATCGA
GCATTTCTTTTATGTTTAATCGAATGGAAGGTCCCATTGATGAGCAAATG
TAAGCACTTTTCCAGTACACTCCTTTGGCCCCTTTTGGCTTGTTTGCTTC
AATTGATTTAACAGCAGCAAGGAAGTTTATGAGGAGGTCATCTTCAGAAA
AATCAGCTTTCCCAAAAGGTATGTGGACAATCCCAGTTTTATCTGCTCTA
TATTCAACTTTTCCCTTCTTGAATTCTTCTATGGCCTGAGGTATGTTAGT
TGTAACAGTACCAGCTTTAGGATTTGGCATGAGTCCCCGTGGTCCAAGAA
TTTTTCCTAGGCTGGCAACCTTAACCATCATATCTGGTGAAGCAATTAGC
TTGTCGAACTCCATGAATCCTCCTTTTATTTGTTCAATCAAGTCATCACC
ACCAACCAAATCTGC
back to top