CN188884

Overview
NameCN188884
Unique NameCN188884
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length765
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CN188884_ssr99 microsatellite CN188884_ssr99:99..110. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig2689 contig Csv1_Contig2689:1..766. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_STRT1 (50S ribosomal protein L1 OS=Streptococcus thermophilus (strain CNRZ 1066) GN=rplA PE=3 SV=2)

HSP 1 Score: 135.576 bits (340), Expect = 2.955e-31
Identity = 65/134 (48.51%), Postives = 92/134 (68.66%), Query Frame = -1
Query:  364 ADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLN 765
            AD VG D+L+++I GG+++FD ++A+PDMM  V  LG++LGPR LMPNPK GTVT ++ +A+EE K GK+ YRADK G V    GK  F  + L+ NF A   +I+  KP  AKGVY  +  I ++ GP I+++
Sbjct:   92 ADFVGEDELVDKINGGWLDFDVVVATPDMMAIVGRLGRVLGPRNLMPNPKTGTVTMDVAKAVEESKGGKITYRADKAGNVQAIIGKVSFEAEKLVENFKAFNDAIQKAKPATAKGVYITNLSITTTQGPGIKVD 225          
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_STRCO (50S ribosomal protein L1 OS=Streptomyces coelicolor GN=rplA PE=3 SV=2)

HSP 1 Score: 135.576 bits (340), Expect = 2.955e-31
Identity = 63/134 (47.01%), Postives = 93/134 (69.40%), Query Frame = -1
Query:  364 ADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLN 765
            AD+VG D+LI+++  G ++FD ++A+PD+M KV  LG++LGPRGLMPNPK GTVT ++ +A+ + K GK+E+R DK   +H   GK  F +  L+ N+ AA++ I   KP  AKG Y K A + ++MGP I L+
Sbjct:   92 ADIVGSDELIDEVSKGRLDFDAVVATPDLMGKVGRLGRVLGPRGLMPNPKTGTVTPDVAKAVNDIKGGKIEFRVDKHSNLHFIIGKTSFDDTKLVENYGAALEEILRLKPSAAKGRYIKKAALSTTMGPGIPLD 225          
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_SPHAL (50S ribosomal protein L1 OS=Sphingopyxis alaskensis GN=rplA PE=3 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 2.955e-31
Identity = 65/138 (47.10%), Postives = 93/138 (67.39%), Query Frame = -1
Query:  352 ADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEM 765
            AD VG +DL+E +  G +++ ++IA+PDMM  V  LGK LGP+GLMPNPK GTVT N+ +A++  K G++E+R +K GI+H   GK  F E+ L  NF A V +I   KP GAKG Y +   + SSMGP ++++  E+
Sbjct:   92 ADKVGAEDLMEDMLAGNLDYGRVIATPDMMGIVGRLGKTLGPKGLMPNPKLGTVTPNVAEAVKAAKGGQIEFRVEKVGIIHAGLGKLSFGEEKLRQNFDAFVDAIVKAKPAGAKGKYVRKVALSSSMGPGVKVDTAEL 229          
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_SALG2 (50S ribosomal protein L1 OS=Salmonella gallinarum (strain 287/91 / NCTC 13346) GN=rplA PE=3 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 2.955e-31
Identity = 68/134 (50.75%), Postives = 89/134 (66.42%), Query Frame = -1
Query:  364 ADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLN 765
            A+LVG +DL +QIK G M FD +IASPD M  V  LG++LGPRGLMPNPK GTVT N+ +A++  K G+V YR DK GI+H   GK DF  D L  N  A + +++  KP  AKGVY K   I ++MG  + ++
Sbjct:   92 AELVGMEDLADQIKKGEMNFDVVIASPDAMRVVGLLGQVLGPRGLMPNPKVGTVTPNVAEAVKNAKAGQVRYRNDKNGIIHTTIGKVDFDADKLKENLEALLVALKKAKPSQAKGVYIKKVSISTTMGAGVAVD 225          
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_SALAI (50S ribosomal protein L1 OS=Salinispora arenicola (strain CNS-205) GN=rplA PE=3 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 2.955e-31
Identity = 62/131 (47.33%), Postives = 88/131 (67.18%), Query Frame = -1
Query:  373 ADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSI 765
            AD VG D+L+ +I+GG++EFD  IA+PD M K+  + +ILGPRGLMPNPK GTVT N+ +A+ + K GK+ +R DK   +H+  GKA FSE  L+ N+ A +  +   KP  AKG Y K   + ++MGP +
Sbjct:   91 ADEVGTDELVARIQGGWLEFDAAIATPDQMAKIGRIARILGPRGLMPNPKTGTVTMNVAKAVSDIKGGKIAFRVDKHSNLHLIIGKASFSEAQLVDNYAAVLDEVLRAKPSAAKGKYLKKVTLTTTMGPGV 221          
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_RHOPT (50S ribosomal protein L1 OS=Rhodopseudomonas palustris (strain TIE-1) GN=rplA PE=3 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 2.955e-31
Identity = 63/133 (47.37%), Postives = 89/133 (66.92%), Query Frame = -1
Query:  367 ADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRL 765
            AD+VG +DL+EQ++ G + FD+ IA+PDMM  V  LGK+LGPRG+MPNPK GTVT ++  A++  K G VE+R +K GI+    GKA F  D L+ N  A   ++   KP GAKG Y +   + S+MGP +++
Sbjct:   91 ADVVGAEDLVEQVQAGNINFDRCIATPDMMPLVGRLGKVLGPRGMMPNPKIGTVTMDVAGAVKGAKGGSVEFRVEKAGIIQAGVGKASFDADKLVENIKALADAVNKAKPTGAKGTYIQRVAVSSTMGPGVKV 223          
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_MYCMS (50S ribosomal protein L1 OS=Mycoplasma mycoides subsp. mycoides SC GN=rplA PE=3 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 2.955e-31
Identity = 64/134 (47.76%), Postives = 95/134 (70.90%), Query Frame = -1
Query:  367 ADLVGGDDLIEQIKG-GFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRL 765
            AD+VGG++LI +IK   + +FD ++A+P+MM K+ ++GKILGP+GLMPNPK GTVT ++ +A+++ KK KVEYRADK G +H+  GK  F  + L  NF A +  I   KP+  KG Y K+  + ++MGP I++
Sbjct:   91 ADIVGGEELINRIKNENWFDFDIIVATPEMMAKLGAIGKILGPKGLMPNPKTGTVTIDVAKAVDDIKKRKVEYRADKEGNIHLIIGKVSFEIEKLEENFKAVIDEIRRVKPQTVKGDYIKNITLSTTMGPGIKV 224          
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_LARHH (50S ribosomal protein L1 OS=Laribacter hongkongensis (strain HLHK9) GN=rplA PE=3 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 2.955e-31
Identity = 65/134 (48.51%), Postives = 92/134 (68.66%), Query Frame = -1
Query:  364 ADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLN 765
            AD+VG +DL +++K G + FD +IASPD M  V  LG+ILGPRGLMPNPK GTVT N+ +A++  K G+V+YR DK+GI+H   G+A F  + L  N  A V +++  KP  +KGVY K   + S+MG  +R++
Sbjct:   92 ADIVGFEDLADEVKKGNLNFDVVIASPDAMRIVGQLGQILGPRGLMPNPKVGTVTPNVAEAVKNAKAGQVQYRTDKSGIIHATIGRASFDVEALRENLGALVDALQKAKPAASKGVYLKKIAVSSTMGVGVRVD 225          
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_ECO27 (50S ribosomal protein L1 OS=Escherichia coli O127:H6 (strain E2348/69 / EPEC) GN=rplA PE=3 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 2.955e-31
Identity = 67/134 (50.00%), Postives = 89/134 (66.42%), Query Frame = -1
Query:  364 ADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLN 765
            A+LVG +DL +QIK G M FD +IASPD M  V  LG++LGPRGLMPNPK GTVT N+ +A++  K G++ YR DK GI+H   GK DF  D L  N  A + +++  KP  AKGVY K   I ++MG  + ++
Sbjct:   92 AELVGMEDLADQIKKGEMNFDVVIASPDAMRVVGQLGQVLGPRGLMPNPKVGTVTPNVAEAVKNAKAGQIRYRNDKNGIIHTTIGKVDFDADKLKENLEALLVALKKAKPTQAKGVYIKKVSISTTMGAGVAVD 225          
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_CHLTB (50S ribosomal protein L1 OS=Chlamydia trachomatis (strain L2b/UCH-1/proctitis) GN=rplA PE=3 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 2.955e-31
Identity = 63/139 (45.32%), Postives = 94/139 (67.63%), Query Frame = -1
Query:  349 ADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEML 765
            AD VG DDL+E+IKGG+++FD  +A+PDMM +V  LGK+LGPR LMP PKAGTVTT++ + I E +KGK+E++AD+ G+ ++   K  F    +  N  A   ++   KP  AKG Y  +  I S+MGP + ++ +E++
Sbjct:   92 ADFVGSDDLVEKIKGGWVDFDVAVATPDMMREVGKLGKVLGPRNLMPTPKAGTVTTDVVKTIAELRKGKIEFKADRAGVCNVGVAKLSFDSAQIKENVEALCAALVKAKPATAKGQYLVNFTISSTMGPGVTVDTRELI 230          
The following BLAST results are available for this feature:
BLAST of CN188884 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL1_STRT12.955e-3148.5150S ribosomal protein L1 OS=Streptococcus thermoph... [more]
RL1_STRCO2.955e-3147.0150S ribosomal protein L1 OS=Streptomyces coelicolo... [more]
RL1_SPHAL2.955e-3147.1050S ribosomal protein L1 OS=Sphingopyxis alaskensi... [more]
RL1_SALG22.955e-3150.7550S ribosomal protein L1 OS=Salmonella gallinarum ... [more]
RL1_SALAI2.955e-3147.3350S ribosomal protein L1 OS=Salinispora arenicola ... [more]
RL1_RHOPT2.955e-3147.3750S ribosomal protein L1 OS=Rhodopseudomonas palus... [more]
RL1_MYCMS2.955e-3147.7650S ribosomal protein L1 OS=Mycoplasma mycoides su... [more]
RL1_LARHH2.955e-3148.5150S ribosomal protein L1 OS=Laribacter hongkongens... [more]
RL1_ECO272.955e-3150.0050S ribosomal protein L1 OS=Escherichia coli O127:... [more]
RL1_CHLTB2.955e-3145.3250S ribosomal protein L1 OS=Chlamydia trachomatis ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0006P10_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0006P10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188884 ID=CN188884; Name=CN188884; organism=Citrus sinensis; type=EST; length=765bp
TTTTTTTTTTTTTTTTTACAAGAATGGAAAAATATTCAGTAGCCATTCAA
GTAATTTTACAGAAAAAAAAATTGCGGTAATGAACCTGAGAGTGGGCGAT
AATAATAATATCTTTTTCAGTACGGAAAAAAGCCATGCTGTATGCATTTT
TCCTTTTTTTTATTTGCTACAATCTCATCCACATTGATAATCAAGATCTC
CTCACCTCACCATAATTCACTCTCCTACAACTTTTGCCAAGCAGTGGCAA
GCCCTGGCATGGGTATCAAAGAGGCTGACTGAACAGTTAAAGCTATCATT
TACAAAATTTAGTTATGTCATTTAGAAATTTGATGGAAGCTTGTAATCGA
GCATTTCTTTTATGTTTAATCGAATGGAAGGTCCCATTGATGAGCAAATG
TAAGCACTTTTCCAGTACACTCCTTTGGCCCCTTTTGGCTTGTTTGCTTC
AATTGATTTAACAGCAGCAAGGAAGTTTATGAGGAGGTCATCTTCAGAAA
AATCAGCTTTCCCAAAAGGTATGTGGACAATCCCAGTTTTATCTGCTCTA
TATTCAACTTTTCCCTTCTTGAATTCTTCTATGGCCTGAGGTATGTTAGT
TGTAACAGTACCAGCTTTAGGATTTGGCATGAGTCCCCGTGGTCCAAGAA
TTTTTCCTAGGCTGGCAACCTTAACCATCATATCTGGTGAAGCAATTAGC
TTGTCGAACTCCATGAATCCTCCTTTTATTTGTTCAATCAAGTCATCACC
ACCAACCAAATCTGC
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