CN188884
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_STRT1 (50S ribosomal protein L1 OS=Streptococcus thermophilus (strain CNRZ 1066) GN=rplA PE=3 SV=2) HSP 1 Score: 135.576 bits (340), Expect = 2.955e-31 Identity = 65/134 (48.51%), Postives = 92/134 (68.66%), Query Frame = -1 Query: 364 ADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLN 765 AD VG D+L+++I GG+++FD ++A+PDMM V LG++LGPR LMPNPK GTVT ++ +A+EE K GK+ YRADK G V GK F + L+ NF A +I+ KP AKGVY + I ++ GP I+++ Sbjct: 92 ADFVGEDELVDKINGGWLDFDVVVATPDMMAIVGRLGRVLGPRNLMPNPKTGTVTMDVAKAVEESKGGKITYRADKAGNVQAIIGKVSFEAEKLVENFKAFNDAIQKAKPATAKGVYITNLSITTTQGPGIKVD 225
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_STRCO (50S ribosomal protein L1 OS=Streptomyces coelicolor GN=rplA PE=3 SV=2) HSP 1 Score: 135.576 bits (340), Expect = 2.955e-31 Identity = 63/134 (47.01%), Postives = 93/134 (69.40%), Query Frame = -1 Query: 364 ADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLN 765 AD+VG D+LI+++ G ++FD ++A+PD+M KV LG++LGPRGLMPNPK GTVT ++ +A+ + K GK+E+R DK +H GK F + L+ N+ AA++ I KP AKG Y K A + ++MGP I L+ Sbjct: 92 ADIVGSDELIDEVSKGRLDFDAVVATPDLMGKVGRLGRVLGPRGLMPNPKTGTVTPDVAKAVNDIKGGKIEFRVDKHSNLHFIIGKTSFDDTKLVENYGAALEEILRLKPSAAKGRYIKKAALSTTMGPGIPLD 225
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_SPHAL (50S ribosomal protein L1 OS=Sphingopyxis alaskensis GN=rplA PE=3 SV=1) HSP 1 Score: 135.576 bits (340), Expect = 2.955e-31 Identity = 65/138 (47.10%), Postives = 93/138 (67.39%), Query Frame = -1 Query: 352 ADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEM 765 AD VG +DL+E + G +++ ++IA+PDMM V LGK LGP+GLMPNPK GTVT N+ +A++ K G++E+R +K GI+H GK F E+ L NF A V +I KP GAKG Y + + SSMGP ++++ E+ Sbjct: 92 ADKVGAEDLMEDMLAGNLDYGRVIATPDMMGIVGRLGKTLGPKGLMPNPKLGTVTPNVAEAVKAAKGGQIEFRVEKVGIIHAGLGKLSFGEEKLRQNFDAFVDAIVKAKPAGAKGKYVRKVALSSSMGPGVKVDTAEL 229
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_SALG2 (50S ribosomal protein L1 OS=Salmonella gallinarum (strain 287/91 / NCTC 13346) GN=rplA PE=3 SV=1) HSP 1 Score: 135.576 bits (340), Expect = 2.955e-31 Identity = 68/134 (50.75%), Postives = 89/134 (66.42%), Query Frame = -1 Query: 364 ADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLN 765 A+LVG +DL +QIK G M FD +IASPD M V LG++LGPRGLMPNPK GTVT N+ +A++ K G+V YR DK GI+H GK DF D L N A + +++ KP AKGVY K I ++MG + ++ Sbjct: 92 AELVGMEDLADQIKKGEMNFDVVIASPDAMRVVGLLGQVLGPRGLMPNPKVGTVTPNVAEAVKNAKAGQVRYRNDKNGIIHTTIGKVDFDADKLKENLEALLVALKKAKPSQAKGVYIKKVSISTTMGAGVAVD 225
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_SALAI (50S ribosomal protein L1 OS=Salinispora arenicola (strain CNS-205) GN=rplA PE=3 SV=1) HSP 1 Score: 135.576 bits (340), Expect = 2.955e-31 Identity = 62/131 (47.33%), Postives = 88/131 (67.18%), Query Frame = -1 Query: 373 ADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSI 765 AD VG D+L+ +I+GG++EFD IA+PD M K+ + +ILGPRGLMPNPK GTVT N+ +A+ + K GK+ +R DK +H+ GKA FSE L+ N+ A + + KP AKG Y K + ++MGP + Sbjct: 91 ADEVGTDELVARIQGGWLEFDAAIATPDQMAKIGRIARILGPRGLMPNPKTGTVTMNVAKAVSDIKGGKIAFRVDKHSNLHLIIGKASFSEAQLVDNYAAVLDEVLRAKPSAAKGKYLKKVTLTTTMGPGV 221
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_RHOPT (50S ribosomal protein L1 OS=Rhodopseudomonas palustris (strain TIE-1) GN=rplA PE=3 SV=1) HSP 1 Score: 135.576 bits (340), Expect = 2.955e-31 Identity = 63/133 (47.37%), Postives = 89/133 (66.92%), Query Frame = -1 Query: 367 ADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRL 765 AD+VG +DL+EQ++ G + FD+ IA+PDMM V LGK+LGPRG+MPNPK GTVT ++ A++ K G VE+R +K GI+ GKA F D L+ N A ++ KP GAKG Y + + S+MGP +++ Sbjct: 91 ADVVGAEDLVEQVQAGNINFDRCIATPDMMPLVGRLGKVLGPRGMMPNPKIGTVTMDVAGAVKGAKGGSVEFRVEKAGIIQAGVGKASFDADKLVENIKALADAVNKAKPTGAKGTYIQRVAVSSTMGPGVKV 223
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_MYCMS (50S ribosomal protein L1 OS=Mycoplasma mycoides subsp. mycoides SC GN=rplA PE=3 SV=1) HSP 1 Score: 135.576 bits (340), Expect = 2.955e-31 Identity = 64/134 (47.76%), Postives = 95/134 (70.90%), Query Frame = -1 Query: 367 ADLVGGDDLIEQIKG-GFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRL 765 AD+VGG++LI +IK + +FD ++A+P+MM K+ ++GKILGP+GLMPNPK GTVT ++ +A+++ KK KVEYRADK G +H+ GK F + L NF A + I KP+ KG Y K+ + ++MGP I++ Sbjct: 91 ADIVGGEELINRIKNENWFDFDIIVATPEMMAKLGAIGKILGPKGLMPNPKTGTVTIDVAKAVDDIKKRKVEYRADKEGNIHLIIGKVSFEIEKLEENFKAVIDEIRRVKPQTVKGDYIKNITLSTTMGPGIKV 224
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_LARHH (50S ribosomal protein L1 OS=Laribacter hongkongensis (strain HLHK9) GN=rplA PE=3 SV=1) HSP 1 Score: 135.576 bits (340), Expect = 2.955e-31 Identity = 65/134 (48.51%), Postives = 92/134 (68.66%), Query Frame = -1 Query: 364 ADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLN 765 AD+VG +DL +++K G + FD +IASPD M V LG+ILGPRGLMPNPK GTVT N+ +A++ K G+V+YR DK+GI+H G+A F + L N A V +++ KP +KGVY K + S+MG +R++ Sbjct: 92 ADIVGFEDLADEVKKGNLNFDVVIASPDAMRIVGQLGQILGPRGLMPNPKVGTVTPNVAEAVKNAKAGQVQYRTDKSGIIHATIGRASFDVEALRENLGALVDALQKAKPAASKGVYLKKIAVSSTMGVGVRVD 225
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_ECO27 (50S ribosomal protein L1 OS=Escherichia coli O127:H6 (strain E2348/69 / EPEC) GN=rplA PE=3 SV=1) HSP 1 Score: 135.576 bits (340), Expect = 2.955e-31 Identity = 67/134 (50.00%), Postives = 89/134 (66.42%), Query Frame = -1 Query: 364 ADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLN 765 A+LVG +DL +QIK G M FD +IASPD M V LG++LGPRGLMPNPK GTVT N+ +A++ K G++ YR DK GI+H GK DF D L N A + +++ KP AKGVY K I ++MG + ++ Sbjct: 92 AELVGMEDLADQIKKGEMNFDVVIASPDAMRVVGQLGQVLGPRGLMPNPKVGTVTPNVAEAVKNAKAGQIRYRNDKNGIIHTTIGKVDFDADKLKENLEALLVALKKAKPTQAKGVYIKKVSISTTMGAGVAVD 225
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_CHLTB (50S ribosomal protein L1 OS=Chlamydia trachomatis (strain L2b/UCH-1/proctitis) GN=rplA PE=3 SV=1) HSP 1 Score: 135.576 bits (340), Expect = 2.955e-31 Identity = 63/139 (45.32%), Postives = 94/139 (67.63%), Query Frame = -1 Query: 349 ADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEML 765 AD VG DDL+E+IKGG+++FD +A+PDMM +V LGK+LGPR LMP PKAGTVTT++ + I E +KGK+E++AD+ G+ ++ K F + N A ++ KP AKG Y + I S+MGP + ++ +E++ Sbjct: 92 ADFVGSDDLVEKIKGGWVDFDVAVATPDMMREVGKLGKVLGPRNLMPTPKAGTVTTDVVKTIAELRKGKIEFKADRAGVCNVGVAKLSFDSAQIKENVEALCAALVKAKPATAKGQYLVNFTISSTMGPGVTVDTRELI 230 The following BLAST results are available for this feature:
BLAST of CN188884 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >CN188884 ID=CN188884; Name=CN188884; organism=Citrus sinensis; type=EST; length=765bpback to top |