CN188884

Overview
NameCN188884
Unique NameCN188884
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length765
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CN188884_ssr99 microsatellite CN188884_ssr99:99..110. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig2689 contig Csv1_Contig2689:1..766. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_CHLT2 (50S ribosomal protein L1 OS=Chlamydia trachomatis (strain L2/434/Bu / ATCC VR-902B) GN=rplA PE=3 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 2.955e-31
Identity = 63/139 (45.32%), Postives = 94/139 (67.63%), Query Frame = -1
Query:  349 ADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEML 765
            AD VG DDL+E+IKGG+++FD  +A+PDMM +V  LGK+LGPR LMP PKAGTVTT++ + I E +KGK+E++AD+ G+ ++   K  F    +  N  A   ++   KP  AKG Y  +  I S+MGP + ++ +E++
Sbjct:   92 ADFVGSDDLVEKIKGGWVDFDVAVATPDMMREVGKLGKVLGPRNLMPTPKAGTVTTDVVKTIAELRKGKIEFKADRAGVCNVGVAKLSFDSAQIKENVEALCAALVKAKPATAKGQYLVNFTISSTMGPGVTVDTRELI 230          
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_STRAU (50S ribosomal protein L1 OS=Streptomyces aureofaciens GN=rplA PE=3 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 3.859e-31
Identity = 67/136 (49.26%), Postives = 93/136 (68.38%), Query Frame = -1
Query:  364 ADLVGGDDLIEQIKGG--FMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLN 765
            AD+VG D+LI +I  G    EFD ++A+PD+M KV  LG++LGPRGLMPNPK GTVT ++ +A+ E K GK+E+R DK   +H   GK  FS++ L+ N+ AA+  I   KP  AKG Y K A + ++MGP I+L+
Sbjct:   91 ADIVGDDELINEIAKGNRLNEFDAVVATPDLMGKVGRLGRVLGPRGLMPNPKTGTVTMDVAKAVTEIKGGKIEFRVDKHSNLHFIIGKVSFSDEKLVENYAAALDEIIRLKPSAAKGRYIKKAALSTTMGPGIQLD 226          
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_SHEDO (50S ribosomal protein L1 OS=Shewanella denitrificans (strain OS217 / ATCC BAA-1090 / DSM 15013) GN=rplA PE=3 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 3.859e-31
Identity = 68/134 (50.75%), Postives = 90/134 (67.16%), Query Frame = -1
Query:  364 ADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLN 765
            A+LVG ++L EQIK G M FD +IASPD M  V  LG+ILGPRGLMPNPK GTVT N+ +A++  K G+V YR DK GI+H   GK DF+ + L  N  A V +++  KP  AKGV+ K   I ++MG  + ++
Sbjct:   92 AELVGMEELAEQIKAGEMNFDVVIASPDAMRVVGMLGQILGPRGLMPNPKTGTVTPNVAEAVKNAKAGQVRYRNDKNGIIHTTIGKVDFTTEQLKENLEALVSALKKAKPAVAKGVFVKKISISTTMGAGVAVD 225          
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_RHISN (50S ribosomal protein L1 OS=Rhizobium sp. (strain NGR234) GN=rplA PE=3 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 3.859e-31
Identity = 66/134 (49.25%), Postives = 90/134 (67.16%), Query Frame = -1
Query:  364 ADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLN 765
            AD+VG +DL+E ++GG ++FD+ IA+PDMM  V  LGK+LGPRG+MPNPK GTVT ++  A++  K G VE+R +K GIVH   GKA F    L  N  A   ++   KP GAKG Y K   I S+MGP ++++
Sbjct:   92 ADVVGAEDLVEIVQGGKIDFDRCIATPDMMPLVGRLGKVLGPRGMMPNPKVGTVTMDVTAAVKSSKGGAVEFRVEKAGIVHAGVGKASFDAKALEENIRAFADAVIKAKPTGAKGNYVKRVAISSTMGPGLKID 225          
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_NOCFA (50S ribosomal protein L1 OS=Nocardia farcinica GN=rplA PE=3 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 3.859e-31
Identity = 64/131 (48.85%), Postives = 88/131 (67.18%), Query Frame = -1
Query:  373 ADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSI 765
            AD VG +DLIE+I+GG+++FD  IA+PD M KV  + ++LGPRGLMPNPK GTVTT++ +A+ + K GK+ +R DK   +H   GKA F E  L+ N+ AA+  I   KP  AKG Y K   + ++ GP I
Sbjct:   92 ADAVGAEDLIERIQGGWLDFDAAIATPDQMAKVGRIARVLGPRGLMPNPKTGTVTTDVAKAVSDIKGGKINFRVDKQANLHFVIGKASFDEAKLVENYGAALDEILRAKPSTAKGRYVKKVTVSTNTGPGI 222          
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_NITWN (50S ribosomal protein L1 OS=Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391) GN=rplA PE=3 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 3.859e-31
Identity = 64/133 (48.12%), Postives = 90/133 (67.67%), Query Frame = -1
Query:  367 ADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRL 765
            AD+VG +DL+E ++GG + FD+ IA+PDMM  V  LGK+LGPRG+MPNPK GTVT ++  A++  K G VE+R +K GIV    GKA FS + L+ N  A   ++   KP GAKG Y +   + S+MGP +++
Sbjct:   91 ADVVGAEDLVETVQGGTIAFDRCIATPDMMPLVGRLGKVLGPRGMMPNPKIGTVTMDVAGAVKGAKGGSVEFRVEKAGIVQAGIGKASFSAEKLVENVKALADAVAKAKPAGAKGTYVQRIAVSSTMGPGVKV 223          
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_MYCPA (50S ribosomal protein L1 OS=Mycobacterium paratuberculosis GN=rplA PE=3 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 3.859e-31
Identity = 63/131 (48.09%), Postives = 87/131 (66.41%), Query Frame = -1
Query:  373 ADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSI 765
            AD+VG DDLIE+I+GGF++FD  IA+PD M KV  + ++LGPRGLMPNPK GTVT ++ +A+ + K GK+ +R DK   +H   GKA F E  L  N+ AA+  +   KP  +KG Y K   + ++ GP I
Sbjct:   92 ADIVGSDDLIEKIQGGFLDFDAAIATPDQMAKVGRIARVLGPRGLMPNPKTGTVTPDVAKAVADIKGGKINFRVDKQANLHFVIGKASFDEKALAENYGAALDEVLRLKPSASKGRYLKKITVSTTTGPGI 222          
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_MYCA1 (50S ribosomal protein L1 OS=Mycobacterium avium (strain 104) GN=rplA PE=3 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 3.859e-31
Identity = 63/131 (48.09%), Postives = 87/131 (66.41%), Query Frame = -1
Query:  373 ADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSI 765
            AD+VG DDLIE+I+GGF++FD  IA+PD M KV  + ++LGPRGLMPNPK GTVT ++ +A+ + K GK+ +R DK   +H   GKA F E  L  N+ AA+  +   KP  +KG Y K   + ++ GP I
Sbjct:   92 ADIVGSDDLIEKIQGGFLDFDAAIATPDQMAKVGRIARVLGPRGLMPNPKTGTVTPDVAKAVADIKGGKINFRVDKQANLHFVIGKASFDEKALAENYGAALDEVLRLKPSASKGRYLKKITVSTTTGPGI 222          
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_MANSM (50S ribosomal protein L1 OS=Mannheimia succiniciproducens (strain MBEL55E) GN=rplA PE=3 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 3.859e-31
Identity = 68/134 (50.75%), Postives = 88/134 (65.67%), Query Frame = -1
Query:  364 ADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLN 765
            ADLVG +DL EQIK G M FD +IASPD M  V  LG++LGPRGLMPNPK GTVT N+  A++  K G+V YR DK GI+H   GKA FS + L  N  A + ++   KP  AKG++ K   I ++MG  + ++
Sbjct:   92 ADLVGMEDLAEQIKKGEMNFDVVIASPDAMRVVGQLGQVLGPRGLMPNPKVGTVTPNVADAVKNAKSGQVRYRNDKNGIIHTTIGKASFSAEALTQNLQALLAALVKAKPTTAKGIFIKKVSISTTMGAGVAVD 225          
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_LACBA (50S ribosomal protein L1 OS=Lactobacillus brevis (strain ATCC 367 / JCM 1170) GN=rplA PE=3 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 3.859e-31
Identity = 62/139 (44.60%), Postives = 93/139 (66.91%), Query Frame = -1
Query:  349 ADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEML 765
            AD+VG  DL+E+I+ G+++FD  IA+PDMM +V  LG++LGP+GLMPNPK GTVT N+ +A+ + K G+V YR D+ G V +PFGK  F  D L  N  +  ++I   +P   +G Y +   I S+ GPS+ +++  +L
Sbjct:   93 ADVVGEQDLVERIQDGWLDFDVAIATPDMMAQVGRLGRVLGPKGLMPNPKTGTVTMNVEKAVSDAKNGQVTYRTDRDGNVAVPFGKVSFDADKLAGNLKSIAETIVRIRPAAVRGTYVQHVSISSTFGPSVDVDLASLL 231          
The following BLAST results are available for this feature:
BLAST of CN188884 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL1_CHLT22.955e-3145.3250S ribosomal protein L1 OS=Chlamydia trachomatis ... [more]
RL1_STRAU3.859e-3149.2650S ribosomal protein L1 OS=Streptomyces aureofaci... [more]
RL1_SHEDO3.859e-3150.7550S ribosomal protein L1 OS=Shewanella denitrifica... [more]
RL1_RHISN3.859e-3149.2550S ribosomal protein L1 OS=Rhizobium sp. (strain ... [more]
RL1_NOCFA3.859e-3148.8550S ribosomal protein L1 OS=Nocardia farcinica GN=... [more]
RL1_NITWN3.859e-3148.1250S ribosomal protein L1 OS=Nitrobacter winogradsk... [more]
RL1_MYCPA3.859e-3148.0950S ribosomal protein L1 OS=Mycobacterium paratube... [more]
RL1_MYCA13.859e-3148.0950S ribosomal protein L1 OS=Mycobacterium avium (s... [more]
RL1_MANSM3.859e-3150.7550S ribosomal protein L1 OS=Mannheimia succinicipr... [more]
RL1_LACBA3.859e-3144.6050S ribosomal protein L1 OS=Lactobacillus brevis (... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS05_0006P10_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0006P10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188884 ID=CN188884; Name=CN188884; organism=Citrus sinensis; type=EST; length=765bp
TTTTTTTTTTTTTTTTTACAAGAATGGAAAAATATTCAGTAGCCATTCAA
GTAATTTTACAGAAAAAAAAATTGCGGTAATGAACCTGAGAGTGGGCGAT
AATAATAATATCTTTTTCAGTACGGAAAAAAGCCATGCTGTATGCATTTT
TCCTTTTTTTTATTTGCTACAATCTCATCCACATTGATAATCAAGATCTC
CTCACCTCACCATAATTCACTCTCCTACAACTTTTGCCAAGCAGTGGCAA
GCCCTGGCATGGGTATCAAAGAGGCTGACTGAACAGTTAAAGCTATCATT
TACAAAATTTAGTTATGTCATTTAGAAATTTGATGGAAGCTTGTAATCGA
GCATTTCTTTTATGTTTAATCGAATGGAAGGTCCCATTGATGAGCAAATG
TAAGCACTTTTCCAGTACACTCCTTTGGCCCCTTTTGGCTTGTTTGCTTC
AATTGATTTAACAGCAGCAAGGAAGTTTATGAGGAGGTCATCTTCAGAAA
AATCAGCTTTCCCAAAAGGTATGTGGACAATCCCAGTTTTATCTGCTCTA
TATTCAACTTTTCCCTTCTTGAATTCTTCTATGGCCTGAGGTATGTTAGT
TGTAACAGTACCAGCTTTAGGATTTGGCATGAGTCCCCGTGGTCCAAGAA
TTTTTCCTAGGCTGGCAACCTTAACCATCATATCTGGTGAAGCAATTAGC
TTGTCGAACTCCATGAATCCTCCTTTTATTTGTTCAATCAAGTCATCACC
ACCAACCAAATCTGC
back to top