CN188884
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_CHLT2 (50S ribosomal protein L1 OS=Chlamydia trachomatis (strain L2/434/Bu / ATCC VR-902B) GN=rplA PE=3 SV=1) HSP 1 Score: 135.576 bits (340), Expect = 2.955e-31 Identity = 63/139 (45.32%), Postives = 94/139 (67.63%), Query Frame = -1 Query: 349 ADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEML 765 AD VG DDL+E+IKGG+++FD +A+PDMM +V LGK+LGPR LMP PKAGTVTT++ + I E +KGK+E++AD+ G+ ++ K F + N A ++ KP AKG Y + I S+MGP + ++ +E++ Sbjct: 92 ADFVGSDDLVEKIKGGWVDFDVAVATPDMMREVGKLGKVLGPRNLMPTPKAGTVTTDVVKTIAELRKGKIEFKADRAGVCNVGVAKLSFDSAQIKENVEALCAALVKAKPATAKGQYLVNFTISSTMGPGVTVDTRELI 230
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_STRAU (50S ribosomal protein L1 OS=Streptomyces aureofaciens GN=rplA PE=3 SV=1) HSP 1 Score: 135.191 bits (339), Expect = 3.859e-31 Identity = 67/136 (49.26%), Postives = 93/136 (68.38%), Query Frame = -1 Query: 364 ADLVGGDDLIEQIKGG--FMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLN 765 AD+VG D+LI +I G EFD ++A+PD+M KV LG++LGPRGLMPNPK GTVT ++ +A+ E K GK+E+R DK +H GK FS++ L+ N+ AA+ I KP AKG Y K A + ++MGP I+L+ Sbjct: 91 ADIVGDDELINEIAKGNRLNEFDAVVATPDLMGKVGRLGRVLGPRGLMPNPKTGTVTMDVAKAVTEIKGGKIEFRVDKHSNLHFIIGKVSFSDEKLVENYAAALDEIIRLKPSAAKGRYIKKAALSTTMGPGIQLD 226
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_SHEDO (50S ribosomal protein L1 OS=Shewanella denitrificans (strain OS217 / ATCC BAA-1090 / DSM 15013) GN=rplA PE=3 SV=1) HSP 1 Score: 135.191 bits (339), Expect = 3.859e-31 Identity = 68/134 (50.75%), Postives = 90/134 (67.16%), Query Frame = -1 Query: 364 ADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLN 765 A+LVG ++L EQIK G M FD +IASPD M V LG+ILGPRGLMPNPK GTVT N+ +A++ K G+V YR DK GI+H GK DF+ + L N A V +++ KP AKGV+ K I ++MG + ++ Sbjct: 92 AELVGMEELAEQIKAGEMNFDVVIASPDAMRVVGMLGQILGPRGLMPNPKTGTVTPNVAEAVKNAKAGQVRYRNDKNGIIHTTIGKVDFTTEQLKENLEALVSALKKAKPAVAKGVFVKKISISTTMGAGVAVD 225
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_RHISN (50S ribosomal protein L1 OS=Rhizobium sp. (strain NGR234) GN=rplA PE=3 SV=1) HSP 1 Score: 135.191 bits (339), Expect = 3.859e-31 Identity = 66/134 (49.25%), Postives = 90/134 (67.16%), Query Frame = -1 Query: 364 ADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLN 765 AD+VG +DL+E ++GG ++FD+ IA+PDMM V LGK+LGPRG+MPNPK GTVT ++ A++ K G VE+R +K GIVH GKA F L N A ++ KP GAKG Y K I S+MGP ++++ Sbjct: 92 ADVVGAEDLVEIVQGGKIDFDRCIATPDMMPLVGRLGKVLGPRGMMPNPKVGTVTMDVTAAVKSSKGGAVEFRVEKAGIVHAGVGKASFDAKALEENIRAFADAVIKAKPTGAKGNYVKRVAISSTMGPGLKID 225
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_NOCFA (50S ribosomal protein L1 OS=Nocardia farcinica GN=rplA PE=3 SV=1) HSP 1 Score: 135.191 bits (339), Expect = 3.859e-31 Identity = 64/131 (48.85%), Postives = 88/131 (67.18%), Query Frame = -1 Query: 373 ADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSI 765 AD VG +DLIE+I+GG+++FD IA+PD M KV + ++LGPRGLMPNPK GTVTT++ +A+ + K GK+ +R DK +H GKA F E L+ N+ AA+ I KP AKG Y K + ++ GP I Sbjct: 92 ADAVGAEDLIERIQGGWLDFDAAIATPDQMAKVGRIARVLGPRGLMPNPKTGTVTTDVAKAVSDIKGGKINFRVDKQANLHFVIGKASFDEAKLVENYGAALDEILRAKPSTAKGRYVKKVTVSTNTGPGI 222
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_NITWN (50S ribosomal protein L1 OS=Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391) GN=rplA PE=3 SV=1) HSP 1 Score: 135.191 bits (339), Expect = 3.859e-31 Identity = 64/133 (48.12%), Postives = 90/133 (67.67%), Query Frame = -1 Query: 367 ADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRL 765 AD+VG +DL+E ++GG + FD+ IA+PDMM V LGK+LGPRG+MPNPK GTVT ++ A++ K G VE+R +K GIV GKA FS + L+ N A ++ KP GAKG Y + + S+MGP +++ Sbjct: 91 ADVVGAEDLVETVQGGTIAFDRCIATPDMMPLVGRLGKVLGPRGMMPNPKIGTVTMDVAGAVKGAKGGSVEFRVEKAGIVQAGIGKASFSAEKLVENVKALADAVAKAKPAGAKGTYVQRIAVSSTMGPGVKV 223
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_MYCPA (50S ribosomal protein L1 OS=Mycobacterium paratuberculosis GN=rplA PE=3 SV=1) HSP 1 Score: 135.191 bits (339), Expect = 3.859e-31 Identity = 63/131 (48.09%), Postives = 87/131 (66.41%), Query Frame = -1 Query: 373 ADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSI 765 AD+VG DDLIE+I+GGF++FD IA+PD M KV + ++LGPRGLMPNPK GTVT ++ +A+ + K GK+ +R DK +H GKA F E L N+ AA+ + KP +KG Y K + ++ GP I Sbjct: 92 ADIVGSDDLIEKIQGGFLDFDAAIATPDQMAKVGRIARVLGPRGLMPNPKTGTVTPDVAKAVADIKGGKINFRVDKQANLHFVIGKASFDEKALAENYGAALDEVLRLKPSASKGRYLKKITVSTTTGPGI 222
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_MYCA1 (50S ribosomal protein L1 OS=Mycobacterium avium (strain 104) GN=rplA PE=3 SV=1) HSP 1 Score: 135.191 bits (339), Expect = 3.859e-31 Identity = 63/131 (48.09%), Postives = 87/131 (66.41%), Query Frame = -1 Query: 373 ADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSI 765 AD+VG DDLIE+I+GGF++FD IA+PD M KV + ++LGPRGLMPNPK GTVT ++ +A+ + K GK+ +R DK +H GKA F E L N+ AA+ + KP +KG Y K + ++ GP I Sbjct: 92 ADIVGSDDLIEKIQGGFLDFDAAIATPDQMAKVGRIARVLGPRGLMPNPKTGTVTPDVAKAVADIKGGKINFRVDKQANLHFVIGKASFDEKALAENYGAALDEVLRLKPSASKGRYLKKITVSTTTGPGI 222
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_MANSM (50S ribosomal protein L1 OS=Mannheimia succiniciproducens (strain MBEL55E) GN=rplA PE=3 SV=1) HSP 1 Score: 135.191 bits (339), Expect = 3.859e-31 Identity = 68/134 (50.75%), Postives = 88/134 (65.67%), Query Frame = -1 Query: 364 ADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLN 765 ADLVG +DL EQIK G M FD +IASPD M V LG++LGPRGLMPNPK GTVT N+ A++ K G+V YR DK GI+H GKA FS + L N A + ++ KP AKG++ K I ++MG + ++ Sbjct: 92 ADLVGMEDLAEQIKKGEMNFDVVIASPDAMRVVGQLGQVLGPRGLMPNPKVGTVTPNVADAVKNAKSGQVRYRNDKNGIIHTTIGKASFSAEALTQNLQALLAALVKAKPTTAKGIFIKKVSISTTMGAGVAVD 225
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_LACBA (50S ribosomal protein L1 OS=Lactobacillus brevis (strain ATCC 367 / JCM 1170) GN=rplA PE=3 SV=1) HSP 1 Score: 135.191 bits (339), Expect = 3.859e-31 Identity = 62/139 (44.60%), Postives = 93/139 (66.91%), Query Frame = -1 Query: 349 ADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEML 765 AD+VG DL+E+I+ G+++FD IA+PDMM +V LG++LGP+GLMPNPK GTVT N+ +A+ + K G+V YR D+ G V +PFGK F D L N + ++I +P +G Y + I S+ GPS+ +++ +L Sbjct: 93 ADVVGEQDLVERIQDGWLDFDVAIATPDMMAQVGRLGRVLGPKGLMPNPKTGTVTMNVEKAVSDAKNGQVTYRTDRDGNVAVPFGKVSFDADKLAGNLKSIAETIVRIRPAAVRGTYVQHVSISSTFGPSVDVDLASLL 231 The following BLAST results are available for this feature:
BLAST of CN188884 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >CN188884 ID=CN188884; Name=CN188884; organism=Citrus sinensis; type=EST; length=765bpback to top |