CN188884

Overview
NameCN188884
Unique NameCN188884
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length765
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CN188884_ssr99 microsatellite CN188884_ssr99:99..110. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig2689 contig Csv1_Contig2689:1..766. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_CHLTR (50S ribosomal protein L1 OS=Chlamydia trachomatis GN=rplA PE=3 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 3.859e-31
Identity = 62/139 (44.60%), Postives = 94/139 (67.63%), Query Frame = -1
Query:  349 ADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEML 765
            AD VG DDL+E+IKGG+++FD  +A+PDMM +V  LGK+LGPR LMP PKAGTVTT++ + + E +KGK+E++AD+ G+ ++   K  F    +  N  A   ++   KP  AKG Y  +  I S+MGP + ++ +E++
Sbjct:   92 ADFVGSDDLVEKIKGGWVDFDVAVATPDMMREVGKLGKVLGPRNLMPTPKAGTVTTDVVKTVAELRKGKIEFKADRAGVCNVGVAKLSFDSAQIKENVEALCAALVKAKPATAKGQYLVNFTISSTMGPGVTVDTRELI 230          
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_CHLTA (50S ribosomal protein L1 OS=Chlamydia trachomatis (strain A/HAR-13 / ATCC VR-571B) GN=rplA PE=3 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 3.859e-31
Identity = 62/139 (44.60%), Postives = 94/139 (67.63%), Query Frame = -1
Query:  349 ADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEML 765
            AD VG DDL+E+IKGG+++FD  +A+PDMM +V  LGK+LGPR LMP PKAGTVTT++ + + E +KGK+E++AD+ G+ ++   K  F    +  N  A   ++   KP  AKG Y  +  I S+MGP + ++ +E++
Sbjct:   92 ADFVGSDDLVEKIKGGWVDFDVAVATPDMMREVGKLGKVLGPRNLMPTPKAGTVTTDVVKTVAELRKGKIEFKADRAGVCNVGVAKLSFDSAQIKENVEALCAALVKAKPATAKGQYLVNFTISSTMGPGVTVDTRELI 230          
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_BARHE (50S ribosomal protein L1 OS=Bartonella henselae GN=rplA PE=3 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 3.859e-31
Identity = 66/134 (49.25%), Postives = 89/134 (66.42%), Query Frame = -1
Query:  364 ADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLN 765
            AD+VG +DL E I GG ++FD+ IA+PDMM  V  LGKILGPR LMPNPK GTVT ++  A++  K G VE+R +K GIVH   GKA F  + ++ N  A   ++   KP+GAKG Y K   + S+MG  I+++
Sbjct:   92 ADIVGAEDLFESINGGAIDFDRCIATPDMMPLVGRLGKILGPRNLMPNPKVGTVTLDVANAVKASKGGAVEFRVEKAGIVHAGIGKASFGVEKIVENIKAFASAVIKAKPQGAKGEYIKRVAVSSTMGVGIKVD 225          
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_STRSF (50S ribosomal protein L1 OS=Streptomyces sp. (strain FRI-5) GN=rplA PE=3 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 5.041e-31
Identity = 66/136 (48.53%), Postives = 93/136 (68.38%), Query Frame = -1
Query:  364 ADLVGGDDLIEQIKGG--FMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLN 765
            AD+VG D+LI +I  G    EFD ++A+PD+M KV  LG++LGPRGLMPNPK GTVT ++ +A+ + K GK+E+R DK   +H   GK  FS++ L+ N+ AA+  I   KP  AKG Y K A + ++MGP I+L+
Sbjct:   91 ADIVGDDELINEIAKGNRLNEFDAVVATPDLMGKVGRLGRVLGPRGLMPNPKTGTVTMDVAKAVTDIKGGKIEFRVDKHSNLHFIIGKVSFSDEQLVENYAAALDEIVRLKPSAAKGRYIKKAALSTTMGPGIQLD 226          
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_STRS2 (50S ribosomal protein L1 OS=Streptococcus suis (strain 98HAH33) GN=rplA PE=3 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 5.041e-31
Identity = 67/134 (50.00%), Postives = 88/134 (65.67%), Query Frame = -1
Query:  364 ADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLN 765
            AD VG DDL+ +I GG+++FD +IA+PDMM  V  LG++LGPR LMPNPK GTVT ++ +A+EE K GK+ YRADK GIV    GK  F  D L+ NF A    +   KP  AKG Y  S  I ++ G  I+++
Sbjct:   92 ADFVGEDDLVAKINGGWLDFDVVIATPDMMAVVGRLGRVLGPRNLMPNPKTGTVTMDVAKAVEESKGGKITYRADKAGIVQALIGKVSFDADKLVENFKAFHDVMAKAKPATAKGTYMTSVSITTTQGVGIKVD 225          
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_STRMU (50S ribosomal protein L1 OS=Streptococcus mutans GN=rplA PE=3 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 5.041e-31
Identity = 66/134 (49.25%), Postives = 89/134 (66.42%), Query Frame = -1
Query:  364 ADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLN 765
            AD VG DDL+++I GG+++FD +IA+PDMM  V  LG++LGPR LMPNPK GTVT ++ +A+EE K GK+ YRADK G V    GK  F  D L+ NF A    I   KP  AKG Y  +  + ++ GP I+++
Sbjct:   92 ADFVGEDDLVQKINGGWLDFDVVIATPDMMAIVGRLGRVLGPRNLMPNPKTGTVTMDVAKAVEESKGGKITYRADKAGNVQTIIGKVSFDADKLVENFKAFNDVIAKAKPATAKGTYITNLVLTTTQGPGIKVD 225          
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_SHEPW (50S ribosomal protein L1 OS=Shewanella piezotolerans (strain WP3 / JCM 13877) GN=rplA PE=3 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 5.041e-31
Identity = 68/142 (47.89%), Postives = 90/142 (63.38%), Query Frame = -1
Query:  340 ADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEMLDYK 765
            A+LVG D+L  Q+K G M FD +IASPD M  V  LG+ILGPRGLMPNPK GTVT N+ +A++  K G+V YR DK GI+H   GK DF    L  N  A + +++  KP  AKGV+ K   I ++MG  + ++   + D K
Sbjct:   92 AELVGMDELAAQVKAGEMNFDVVIASPDAMRVVGQLGQILGPRGLMPNPKTGTVTPNVAEAVKNAKAGQVRYRNDKNGIIHTTIGKVDFETAQLKENLEALLAALKKAKPAAAKGVFLKKVSISTTMGAGVAVDQSTLEDVK 233          
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_RHILO (50S ribosomal protein L1 OS=Rhizobium loti GN=rplA PE=3 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 5.041e-31
Identity = 64/138 (46.38%), Postives = 91/138 (65.94%), Query Frame = -1
Query:  352 ADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEM 765
            AD+VG +DL++ ++ G ++FD+ IA+PDMM  V  LGK+LGPRG+MPNPK GTVTT++  A++  K G VE+R +K GIVH   GK  F    L  N  A   ++   KP GAKG Y K   + S+MGP ++L++  +
Sbjct:   92 ADIVGAEDLVDIVQKGTIDFDRCIATPDMMPLVGRLGKVLGPRGMMPNPKVGTVTTDVAAAVKASKGGAVEFRVEKAGIVHAGVGKVSFDVKALEENIRAFADAVTKAKPAGAKGNYVKKVSVTSTMGPGLKLDVSTL 229          
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_POLSQ (50S ribosomal protein L1 OS=Polynucleobacter sp. (strain QLW-P1DMWA-1) GN=rplA PE=3 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 5.041e-31
Identity = 64/134 (47.76%), Postives = 92/134 (68.66%), Query Frame = -1
Query:  364 ADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLN 765
            A++VG ++L EQIKGG ++FD LIASPD M  V +LG++LGPRGLMPNPK GTVT ++  A++  K G+V++R DK GIVH   G+  F    L  N LA ++++   KP  +KG+Y K   + S+MG  +R++
Sbjct:   92 AEIVGMEELAEQIKGGKIDFDILIASPDTMKIVGTLGQVLGPRGLMPNPKVGTVTPDVATAVKNAKAGQVQFRVDKAGIVHASIGRRSFEPAALKSNLLALLEALNKAKPPASKGIYLKKVAVSSTMGAGVRVD 225          
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_NITEU (50S ribosomal protein L1 OS=Nitrosomonas europaea GN=rplA PE=3 SV=2)

HSP 1 Score: 134.806 bits (338), Expect = 5.041e-31
Identity = 67/134 (50.00%), Postives = 90/134 (67.16%), Query Frame = -1
Query:  364 ADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLN 765
            AD+VG +DL E++K G + FD  IASPD M  V  LG+ILGPRGLMPNPK GTVT ++  AI   K G+V++RADK GIVH   G+A F  + L  N +A V ++  +KP  +KGVY +   I S+MG  +R++
Sbjct:   92 ADIVGFEDLAERVKAGEINFDLAIASPDAMRVVGQLGQILGPRGLMPNPKVGTVTVDVINAIRNAKAGQVQFRADKAGIVHCTVGRASFDVEALRANIMALVDALNKSKPTTSKGVYLRKMAISSTMGVGVRVD 225          
The following BLAST results are available for this feature:
BLAST of CN188884 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL1_CHLTR3.859e-3144.6050S ribosomal protein L1 OS=Chlamydia trachomatis ... [more]
RL1_CHLTA3.859e-3144.6050S ribosomal protein L1 OS=Chlamydia trachomatis ... [more]
RL1_BARHE3.859e-3149.2550S ribosomal protein L1 OS=Bartonella henselae GN... [more]
RL1_STRSF5.041e-3148.5350S ribosomal protein L1 OS=Streptomyces sp. (stra... [more]
RL1_STRS25.041e-3150.0050S ribosomal protein L1 OS=Streptococcus suis (st... [more]
RL1_STRMU5.041e-3149.2550S ribosomal protein L1 OS=Streptococcus mutans G... [more]
RL1_SHEPW5.041e-3147.8950S ribosomal protein L1 OS=Shewanella piezotolera... [more]
RL1_RHILO5.041e-3146.3850S ribosomal protein L1 OS=Rhizobium loti GN=rplA... [more]
RL1_POLSQ5.041e-3147.7650S ribosomal protein L1 OS=Polynucleobacter sp. (... [more]
RL1_NITEU5.041e-3150.0050S ribosomal protein L1 OS=Nitrosomonas europaea ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0006P10_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0006P10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188884 ID=CN188884; Name=CN188884; organism=Citrus sinensis; type=EST; length=765bp
TTTTTTTTTTTTTTTTTACAAGAATGGAAAAATATTCAGTAGCCATTCAA
GTAATTTTACAGAAAAAAAAATTGCGGTAATGAACCTGAGAGTGGGCGAT
AATAATAATATCTTTTTCAGTACGGAAAAAAGCCATGCTGTATGCATTTT
TCCTTTTTTTTATTTGCTACAATCTCATCCACATTGATAATCAAGATCTC
CTCACCTCACCATAATTCACTCTCCTACAACTTTTGCCAAGCAGTGGCAA
GCCCTGGCATGGGTATCAAAGAGGCTGACTGAACAGTTAAAGCTATCATT
TACAAAATTTAGTTATGTCATTTAGAAATTTGATGGAAGCTTGTAATCGA
GCATTTCTTTTATGTTTAATCGAATGGAAGGTCCCATTGATGAGCAAATG
TAAGCACTTTTCCAGTACACTCCTTTGGCCCCTTTTGGCTTGTTTGCTTC
AATTGATTTAACAGCAGCAAGGAAGTTTATGAGGAGGTCATCTTCAGAAA
AATCAGCTTTCCCAAAAGGTATGTGGACAATCCCAGTTTTATCTGCTCTA
TATTCAACTTTTCCCTTCTTGAATTCTTCTATGGCCTGAGGTATGTTAGT
TGTAACAGTACCAGCTTTAGGATTTGGCATGAGTCCCCGTGGTCCAAGAA
TTTTTCCTAGGCTGGCAACCTTAACCATCATATCTGGTGAAGCAATTAGC
TTGTCGAACTCCATGAATCCTCCTTTTATTTGTTCAATCAAGTCATCACC
ACCAACCAAATCTGC
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