CN188884
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_SHEB2 (50S ribosomal protein L1 OS=Shewanella baltica (strain OS223) GN=rplA PE=3 SV=1) HSP 1 Score: 134.42 bits (337), Expect = 6.583e-31 Identity = 68/134 (50.75%), Postives = 89/134 (66.42%), Query Frame = -1 Query: 364 ADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLN 765 A+LVG DDL E+IK G M FD +IASPD M V LG+ILGPRGLMPNPK GTVT N+ +A++ K G+V YR DK GI+H GK DF+ L N A V +++ KP AKG++ K I ++MG + ++ Sbjct: 92 AELVGMDDLAEKIKAGEMNFDVVIASPDAMRVVGMLGQILGPRGLMPNPKTGTVTPNVAEAVKNAKAGQVRYRNDKNGIIHTTIGKVDFTPVQLKENLEALVSALKKAKPAVAKGIFVKKISISTTMGAGVAVD 225
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_SALTO (50S ribosomal protein L1 OS=Salinispora tropica (strain ATCC BAA-916 / DSM 44818 / CNB-440) GN=rplA PE=3 SV=1) HSP 1 Score: 134.42 bits (337), Expect = 6.583e-31 Identity = 61/134 (45.52%), Postives = 90/134 (67.16%), Query Frame = -1 Query: 364 ADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLN 765 AD VG D+L+ +I+GG+++FD IA+PD M K+ + +ILGPRGLMPNPK GTVT N+ +A+ + K GK+ +R DK +H+ GKA FSE L+ N+ A + I KP AKG Y + + ++MGP + ++ Sbjct: 91 ADEVGTDELVARIQGGWLDFDAAIATPDQMAKIGRIARILGPRGLMPNPKTGTVTMNVTKAVADIKGGKIAFRVDKHSNLHLIIGKASFSESQLVDNYAAVLDEILRAKPSAAKGKYLRKVTLTTTMGPGVPID 224
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_RHOE4 (50S ribosomal protein L1 OS=Rhodococcus erythropolis (strain PR4 / NBRC 100887) GN=rplA PE=3 SV=1) HSP 1 Score: 134.42 bits (337), Expect = 6.583e-31 Identity = 62/131 (47.33%), Postives = 89/131 (67.94%), Query Frame = -1 Query: 373 ADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSI 765 AD+VG +DLIE+I+GG+++FD IA+PD M KV + ++LGPRGLMPNPK GTVT ++ +A+ + K GK+ +R DK +H GKA F ++ L+ N+ AA+ I KP AKG Y K + ++ GP I Sbjct: 92 ADVVGAEDLIERIQGGWVDFDAAIATPDQMAKVGRIARVLGPRGLMPNPKTGTVTADVTKAVNDIKGGKINFRVDKQANLHFVIGKASFDDEKLVENYGAALDEILRAKPSSAKGRYVKKITVSTTTGPGI 222
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_PELLD (50S ribosomal protein L1 OS=Pelodictyon luteolum (strain DSM 273) GN=rplA PE=3 SV=1) HSP 1 Score: 134.42 bits (337), Expect = 6.583e-31 Identity = 63/133 (47.37%), Postives = 91/133 (68.42%), Query Frame = -1 Query: 367 ADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRL 765 ADLVG ++ IE+I+ G+ D +IA+PD+M ++ + KILGPRGLMPNPK+GTVT ++ +A++E K GK+E+R DK G VH P GKA F D L+ N + +K + KP AKG Y + + S+M P +R+ Sbjct: 90 ADLVGFEEYIEKIQNGWTGVDVIIATPDVMGQLGKVAKILGPRGLMPNPKSGTVTMDVAKAVKEVKAGKIEFRVDKAGNVHAPVGKASFPADQLVTNITSFLKEVMRLKPSAAKGQYVQGIAVSSTMSPGVRI 222
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_NITOC (50S ribosomal protein L1 OS=Nitrosococcus oceani (strain ATCC 19707 / NCIMB 11848) GN=rplA PE=3 SV=1) HSP 1 Score: 134.42 bits (337), Expect = 6.583e-31 Identity = 67/134 (50.00%), Postives = 87/134 (64.93%), Query Frame = -1 Query: 364 ADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLN 765 AD+VG +DL E +K G ++FD +IASPD M V LG ILGPRGLMPNPK GTVTT++ A+ + K G+V YR DK GI+H GK F D L N A V+ + KP AKG+Y K + ++MGP I ++ Sbjct: 92 ADVVGLEDLAETVKSGQIDFDVIIASPDAMRVVGQLGPILGPRGLMPNPKVGTVTTDVAGAVTKAKAGQVRYRTDKAGIIHCSIGKTSFEVDALKQNLRALVEDLGKLKPASAKGIYLKKLTLSTTMGPGIAVD 225
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_MYCTU (50S ribosomal protein L1 OS=Mycobacterium tuberculosis GN=rplA PE=3 SV=1) HSP 1 Score: 134.42 bits (337), Expect = 6.583e-31 Identity = 63/131 (48.09%), Postives = 87/131 (66.41%), Query Frame = -1 Query: 373 ADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSI 765 AD+VG DDLIE+I+GG++EFD IA+PD M KV + ++LGPRGLMPNPK GTVT ++ +A+ + K GK+ +R DK +H GKA F E L N+ AA+ + KP +KG Y K + ++ GP I Sbjct: 92 ADVVGSDDLIERIQGGWLEFDAAIATPDQMAKVGRIARVLGPRGLMPNPKTGTVTADVAKAVADIKGGKINFRVDKQANLHFVIGKASFDEKLLAENYGAAIDEVLRLKPSSSKGRYLKKITVSTTTGPGI 222
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_MYCTA (50S ribosomal protein L1 OS=Mycobacterium tuberculosis (strain ATCC 25177 / H37Ra) GN=rplA PE=3 SV=1) HSP 1 Score: 134.42 bits (337), Expect = 6.583e-31 Identity = 63/131 (48.09%), Postives = 87/131 (66.41%), Query Frame = -1 Query: 373 ADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSI 765 AD+VG DDLIE+I+GG++EFD IA+PD M KV + ++LGPRGLMPNPK GTVT ++ +A+ + K GK+ +R DK +H GKA F E L N+ AA+ + KP +KG Y K + ++ GP I Sbjct: 92 ADVVGSDDLIERIQGGWLEFDAAIATPDQMAKVGRIARVLGPRGLMPNPKTGTVTADVAKAVADIKGGKINFRVDKQANLHFVIGKASFDEKLLAENYGAAIDEVLRLKPSSSKGRYLKKITVSTTTGPGI 222
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_MYCBT (50S ribosomal protein L1 OS=Mycobacterium bovis (strain BCG / Tokyo 172 / ATCC 35737 / TMC 1019) GN=rplA PE=3 SV=1) HSP 1 Score: 134.42 bits (337), Expect = 6.583e-31 Identity = 63/131 (48.09%), Postives = 87/131 (66.41%), Query Frame = -1 Query: 373 ADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSI 765 AD+VG DDLIE+I+GG++EFD IA+PD M KV + ++LGPRGLMPNPK GTVT ++ +A+ + K GK+ +R DK +H GKA F E L N+ AA+ + KP +KG Y K + ++ GP I Sbjct: 92 ADVVGSDDLIERIQGGWLEFDAAIAAPDQMAKVGRIARVLGPRGLMPNPKTGTVTADVAKAVADIKGGKINFRVDKQANLHFVIGKASFDEKLLAENYGAAIDEVLRLKPSSSKGRYLKKITVSTTTGPGI 222
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_MYCBP (50S ribosomal protein L1 OS=Mycobacterium bovis (strain BCG / Pasteur 1173P2) GN=rplA PE=3 SV=1) HSP 1 Score: 134.42 bits (337), Expect = 6.583e-31 Identity = 63/131 (48.09%), Postives = 87/131 (66.41%), Query Frame = -1 Query: 373 ADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSI 765 AD+VG DDLIE+I+GG++EFD IA+PD M KV + ++LGPRGLMPNPK GTVT ++ +A+ + K GK+ +R DK +H GKA F E L N+ AA+ + KP +KG Y K + ++ GP I Sbjct: 92 ADVVGSDDLIERIQGGWLEFDAAIAAPDQMAKVGRIARVLGPRGLMPNPKTGTVTADVAKAVADIKGGKINFRVDKQANLHFVIGKASFDEKLLAENYGAAIDEVLRLKPSSSKGRYLKKITVSTTTGPGI 222
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_MYCBO (50S ribosomal protein L1 OS=Mycobacterium bovis GN=rplA PE=3 SV=1) HSP 1 Score: 134.42 bits (337), Expect = 6.583e-31 Identity = 63/131 (48.09%), Postives = 87/131 (66.41%), Query Frame = -1 Query: 373 ADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSI 765 AD+VG DDLIE+I+GG++EFD IA+PD M KV + ++LGPRGLMPNPK GTVT ++ +A+ + K GK+ +R DK +H GKA F E L N+ AA+ + KP +KG Y K + ++ GP I Sbjct: 92 ADVVGSDDLIERIQGGWLEFDAAIAAPDQMAKVGRIARVLGPRGLMPNPKTGTVTADVAKAVADIKGGKINFRVDKQANLHFVIGKASFDEKLLAENYGAAIDEVLRLKPSSSKGRYLKKITVSTTTGPGI 222 The following BLAST results are available for this feature:
BLAST of CN188884 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >CN188884 ID=CN188884; Name=CN188884; organism=Citrus sinensis; type=EST; length=765bpback to top |