CN188884

Overview
NameCN188884
Unique NameCN188884
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length765
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CN188884_ssr99 microsatellite CN188884_ssr99:99..110. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig2689 contig Csv1_Contig2689:1..766. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_SHEB2 (50S ribosomal protein L1 OS=Shewanella baltica (strain OS223) GN=rplA PE=3 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 6.583e-31
Identity = 68/134 (50.75%), Postives = 89/134 (66.42%), Query Frame = -1
Query:  364 ADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLN 765
            A+LVG DDL E+IK G M FD +IASPD M  V  LG+ILGPRGLMPNPK GTVT N+ +A++  K G+V YR DK GI+H   GK DF+   L  N  A V +++  KP  AKG++ K   I ++MG  + ++
Sbjct:   92 AELVGMDDLAEKIKAGEMNFDVVIASPDAMRVVGMLGQILGPRGLMPNPKTGTVTPNVAEAVKNAKAGQVRYRNDKNGIIHTTIGKVDFTPVQLKENLEALVSALKKAKPAVAKGIFVKKISISTTMGAGVAVD 225          
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_SALTO (50S ribosomal protein L1 OS=Salinispora tropica (strain ATCC BAA-916 / DSM 44818 / CNB-440) GN=rplA PE=3 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 6.583e-31
Identity = 61/134 (45.52%), Postives = 90/134 (67.16%), Query Frame = -1
Query:  364 ADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLN 765
            AD VG D+L+ +I+GG+++FD  IA+PD M K+  + +ILGPRGLMPNPK GTVT N+ +A+ + K GK+ +R DK   +H+  GKA FSE  L+ N+ A +  I   KP  AKG Y +   + ++MGP + ++
Sbjct:   91 ADEVGTDELVARIQGGWLDFDAAIATPDQMAKIGRIARILGPRGLMPNPKTGTVTMNVTKAVADIKGGKIAFRVDKHSNLHLIIGKASFSESQLVDNYAAVLDEILRAKPSAAKGKYLRKVTLTTTMGPGVPID 224          
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_RHOE4 (50S ribosomal protein L1 OS=Rhodococcus erythropolis (strain PR4 / NBRC 100887) GN=rplA PE=3 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 6.583e-31
Identity = 62/131 (47.33%), Postives = 89/131 (67.94%), Query Frame = -1
Query:  373 ADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSI 765
            AD+VG +DLIE+I+GG+++FD  IA+PD M KV  + ++LGPRGLMPNPK GTVT ++ +A+ + K GK+ +R DK   +H   GKA F ++ L+ N+ AA+  I   KP  AKG Y K   + ++ GP I
Sbjct:   92 ADVVGAEDLIERIQGGWVDFDAAIATPDQMAKVGRIARVLGPRGLMPNPKTGTVTADVTKAVNDIKGGKINFRVDKQANLHFVIGKASFDDEKLVENYGAALDEILRAKPSSAKGRYVKKITVSTTTGPGI 222          
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_PELLD (50S ribosomal protein L1 OS=Pelodictyon luteolum (strain DSM 273) GN=rplA PE=3 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 6.583e-31
Identity = 63/133 (47.37%), Postives = 91/133 (68.42%), Query Frame = -1
Query:  367 ADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRL 765
            ADLVG ++ IE+I+ G+   D +IA+PD+M ++  + KILGPRGLMPNPK+GTVT ++ +A++E K GK+E+R DK G VH P GKA F  D L+ N  + +K +   KP  AKG Y +   + S+M P +R+
Sbjct:   90 ADLVGFEEYIEKIQNGWTGVDVIIATPDVMGQLGKVAKILGPRGLMPNPKSGTVTMDVAKAVKEVKAGKIEFRVDKAGNVHAPVGKASFPADQLVTNITSFLKEVMRLKPSAAKGQYVQGIAVSSTMSPGVRI 222          
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_NITOC (50S ribosomal protein L1 OS=Nitrosococcus oceani (strain ATCC 19707 / NCIMB 11848) GN=rplA PE=3 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 6.583e-31
Identity = 67/134 (50.00%), Postives = 87/134 (64.93%), Query Frame = -1
Query:  364 ADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLN 765
            AD+VG +DL E +K G ++FD +IASPD M  V  LG ILGPRGLMPNPK GTVTT++  A+ + K G+V YR DK GI+H   GK  F  D L  N  A V+ +   KP  AKG+Y K   + ++MGP I ++
Sbjct:   92 ADVVGLEDLAETVKSGQIDFDVIIASPDAMRVVGQLGPILGPRGLMPNPKVGTVTTDVAGAVTKAKAGQVRYRTDKAGIIHCSIGKTSFEVDALKQNLRALVEDLGKLKPASAKGIYLKKLTLSTTMGPGIAVD 225          
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_MYCTU (50S ribosomal protein L1 OS=Mycobacterium tuberculosis GN=rplA PE=3 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 6.583e-31
Identity = 63/131 (48.09%), Postives = 87/131 (66.41%), Query Frame = -1
Query:  373 ADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSI 765
            AD+VG DDLIE+I+GG++EFD  IA+PD M KV  + ++LGPRGLMPNPK GTVT ++ +A+ + K GK+ +R DK   +H   GKA F E  L  N+ AA+  +   KP  +KG Y K   + ++ GP I
Sbjct:   92 ADVVGSDDLIERIQGGWLEFDAAIATPDQMAKVGRIARVLGPRGLMPNPKTGTVTADVAKAVADIKGGKINFRVDKQANLHFVIGKASFDEKLLAENYGAAIDEVLRLKPSSSKGRYLKKITVSTTTGPGI 222          
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_MYCTA (50S ribosomal protein L1 OS=Mycobacterium tuberculosis (strain ATCC 25177 / H37Ra) GN=rplA PE=3 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 6.583e-31
Identity = 63/131 (48.09%), Postives = 87/131 (66.41%), Query Frame = -1
Query:  373 ADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSI 765
            AD+VG DDLIE+I+GG++EFD  IA+PD M KV  + ++LGPRGLMPNPK GTVT ++ +A+ + K GK+ +R DK   +H   GKA F E  L  N+ AA+  +   KP  +KG Y K   + ++ GP I
Sbjct:   92 ADVVGSDDLIERIQGGWLEFDAAIATPDQMAKVGRIARVLGPRGLMPNPKTGTVTADVAKAVADIKGGKINFRVDKQANLHFVIGKASFDEKLLAENYGAAIDEVLRLKPSSSKGRYLKKITVSTTTGPGI 222          
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_MYCBT (50S ribosomal protein L1 OS=Mycobacterium bovis (strain BCG / Tokyo 172 / ATCC 35737 / TMC 1019) GN=rplA PE=3 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 6.583e-31
Identity = 63/131 (48.09%), Postives = 87/131 (66.41%), Query Frame = -1
Query:  373 ADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSI 765
            AD+VG DDLIE+I+GG++EFD  IA+PD M KV  + ++LGPRGLMPNPK GTVT ++ +A+ + K GK+ +R DK   +H   GKA F E  L  N+ AA+  +   KP  +KG Y K   + ++ GP I
Sbjct:   92 ADVVGSDDLIERIQGGWLEFDAAIAAPDQMAKVGRIARVLGPRGLMPNPKTGTVTADVAKAVADIKGGKINFRVDKQANLHFVIGKASFDEKLLAENYGAAIDEVLRLKPSSSKGRYLKKITVSTTTGPGI 222          
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_MYCBP (50S ribosomal protein L1 OS=Mycobacterium bovis (strain BCG / Pasteur 1173P2) GN=rplA PE=3 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 6.583e-31
Identity = 63/131 (48.09%), Postives = 87/131 (66.41%), Query Frame = -1
Query:  373 ADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSI 765
            AD+VG DDLIE+I+GG++EFD  IA+PD M KV  + ++LGPRGLMPNPK GTVT ++ +A+ + K GK+ +R DK   +H   GKA F E  L  N+ AA+  +   KP  +KG Y K   + ++ GP I
Sbjct:   92 ADVVGSDDLIERIQGGWLEFDAAIAAPDQMAKVGRIARVLGPRGLMPNPKTGTVTADVAKAVADIKGGKINFRVDKQANLHFVIGKASFDEKLLAENYGAAIDEVLRLKPSSSKGRYLKKITVSTTTGPGI 222          
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_MYCBO (50S ribosomal protein L1 OS=Mycobacterium bovis GN=rplA PE=3 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 6.583e-31
Identity = 63/131 (48.09%), Postives = 87/131 (66.41%), Query Frame = -1
Query:  373 ADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSI 765
            AD+VG DDLIE+I+GG++EFD  IA+PD M KV  + ++LGPRGLMPNPK GTVT ++ +A+ + K GK+ +R DK   +H   GKA F E  L  N+ AA+  +   KP  +KG Y K   + ++ GP I
Sbjct:   92 ADVVGSDDLIERIQGGWLEFDAAIAAPDQMAKVGRIARVLGPRGLMPNPKTGTVTADVAKAVADIKGGKINFRVDKQANLHFVIGKASFDEKLLAENYGAAIDEVLRLKPSSSKGRYLKKITVSTTTGPGI 222          
The following BLAST results are available for this feature:
BLAST of CN188884 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL1_SHEB26.583e-3150.7550S ribosomal protein L1 OS=Shewanella baltica (st... [more]
RL1_SALTO6.583e-3145.5250S ribosomal protein L1 OS=Salinispora tropica (s... [more]
RL1_RHOE46.583e-3147.3350S ribosomal protein L1 OS=Rhodococcus erythropol... [more]
RL1_PELLD6.583e-3147.3750S ribosomal protein L1 OS=Pelodictyon luteolum (... [more]
RL1_NITOC6.583e-3150.0050S ribosomal protein L1 OS=Nitrosococcus oceani (... [more]
RL1_MYCTU6.583e-3148.0950S ribosomal protein L1 OS=Mycobacterium tubercul... [more]
RL1_MYCTA6.583e-3148.0950S ribosomal protein L1 OS=Mycobacterium tubercul... [more]
RL1_MYCBT6.583e-3148.0950S ribosomal protein L1 OS=Mycobacterium bovis (s... [more]
RL1_MYCBP6.583e-3148.0950S ribosomal protein L1 OS=Mycobacterium bovis (s... [more]
RL1_MYCBO6.583e-3148.0950S ribosomal protein L1 OS=Mycobacterium bovis GN... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0006P10_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0006P10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188884 ID=CN188884; Name=CN188884; organism=Citrus sinensis; type=EST; length=765bp
TTTTTTTTTTTTTTTTTACAAGAATGGAAAAATATTCAGTAGCCATTCAA
GTAATTTTACAGAAAAAAAAATTGCGGTAATGAACCTGAGAGTGGGCGAT
AATAATAATATCTTTTTCAGTACGGAAAAAAGCCATGCTGTATGCATTTT
TCCTTTTTTTTATTTGCTACAATCTCATCCACATTGATAATCAAGATCTC
CTCACCTCACCATAATTCACTCTCCTACAACTTTTGCCAAGCAGTGGCAA
GCCCTGGCATGGGTATCAAAGAGGCTGACTGAACAGTTAAAGCTATCATT
TACAAAATTTAGTTATGTCATTTAGAAATTTGATGGAAGCTTGTAATCGA
GCATTTCTTTTATGTTTAATCGAATGGAAGGTCCCATTGATGAGCAAATG
TAAGCACTTTTCCAGTACACTCCTTTGGCCCCTTTTGGCTTGTTTGCTTC
AATTGATTTAACAGCAGCAAGGAAGTTTATGAGGAGGTCATCTTCAGAAA
AATCAGCTTTCCCAAAAGGTATGTGGACAATCCCAGTTTTATCTGCTCTA
TATTCAACTTTTCCCTTCTTGAATTCTTCTATGGCCTGAGGTATGTTAGT
TGTAACAGTACCAGCTTTAGGATTTGGCATGAGTCCCCGTGGTCCAAGAA
TTTTTCCTAGGCTGGCAACCTTAACCATCATATCTGGTGAAGCAATTAGC
TTGTCGAACTCCATGAATCCTCCTTTTATTTGTTCAATCAAGTCATCACC
ACCAACCAAATCTGC
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