CN188884
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_THESQ (50S ribosomal protein L1 OS=Thermotoga sp. (strain RQ2) GN=rplA PE=3 SV=1) HSP 1 Score: 158.303 bits (399), Expect = 4.257e-38 Identity = 76/140 (54.29%), Postives = 102/140 (72.86%), Query Frame = -1 Query: 349 ADLVGGDDLIEQI-KGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEML 765 AD VG +DL+E+I K GF++FD IA+PDMM + LGKILGPRGLMP+PK+GTVT + +A++EFKKG++E R DKTG +HIP GK F + L N +AA+K I KP G KG + K A + S+MGP I+LN++ +L Sbjct: 92 ADYVGAEDLVEKIEKEGFLDFDVAIATPDMMRIIGRLGKILGPRGLMPSPKSGTVTQEVAEAVKEFKKGRIEVRTDKTGNIHIPVGKRSFDNEKLKENIIAAIKQIMQMKPAGVKGQFIKKAVLSSTMGPGIKLNLQSLL 231
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_DICTD (50S ribosomal protein L1 OS=Dictyoglomus turgidum (strain Z-1310 / DSM 6724) GN=rplA PE=3 SV=1) HSP 1 Score: 157.532 bits (397), Expect = 7.262e-38 Identity = 77/143 (53.85%), Postives = 107/143 (74.83%), Query Frame = -1 Query: 346 ADLVGGDDLIEQIKGGFMEFDKLIASPDMM--VKVAS-LGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEMLD 765 AD VGG+DL++QI+ G+++FD IA+PD+M +K+ S LGKILGPRGLMPNPK GTVT +I +A++E+K G+VE+R D+ GIVH+P GKA FSE+ L N + + ++ KP AKG Y+KS YI SMGPS+ ++ K + D Sbjct: 92 ADYVGGEDLVKQIESGWLDFDVAIATPDIMGTLKIPSRLGKILGPRGLMPNPKTGTVTNDIAKAVKEYKAGRVEFRTDRYGIVHVPIGKASFSEEALYKNLMTVLGTLLRLKPAAAKGQYFKSIYISPSMGPSVPIDTKNIAD 234
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_DICT6 (50S ribosomal protein L1 OS=Dictyoglomus thermophilum (strain ATCC 35947 / DSM 3960 / H-6-12) GN=rplA PE=3 SV=1) HSP 1 Score: 157.532 bits (397), Expect = 7.262e-38 Identity = 77/143 (53.85%), Postives = 107/143 (74.83%), Query Frame = -1 Query: 346 ADLVGGDDLIEQIKGGFMEFDKLIASPDMM--VKVAS-LGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEMLD 765 AD VGG+DL++QI+ G+++FD IA+PD+M +K+ S LGKILGPRGLMPNPK GTVT +I +A++E+K G+VE+R D+ GIVH+P GKA FSE+ L N + + ++ KP AKG Y+KS YI SMGPS+ ++ K + D Sbjct: 92 ADYVGGEDLVKQIESGWLDFDVAIATPDIMGTLKIPSRLGKILGPRGLMPNPKTGTVTNDIAKAVKEYKAGRVEFRTDRYGIVHVPIGKASFSEEALYKNLMTVLGTLLRLKPAAAKGQYFKSIYISPSMGPSVPIDTKNIAD 234
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_THENN (50S ribosomal protein L1 OS=Thermotoga neapolitana (strain ATCC 49049 / DSM 4359 / NS-E) GN=rplA PE=3 SV=1) HSP 1 Score: 157.147 bits (396), Expect = 9.484e-38 Identity = 74/141 (52.48%), Postives = 103/141 (73.05%), Query Frame = -1 Query: 346 ADLVGGDDLIEQI-KGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEMLD 765 AD VG +DL+E+I K GF++FD IA+PDMM + LGKILGPRGLMP+PK+GTVT + +A++EFKKG++E R DKTG +HIP GK F + + N ++A+K I KP G KG + K A + S+MGP I+LN++ +L+ Sbjct: 92 ADYVGAEDLVEKIEKEGFLDFDVAIATPDMMRVIGRLGKILGPRGLMPSPKSGTVTNEVAEAVKEFKKGRIEVRTDKTGNIHIPVGKKSFDNEKIKENVISAIKQIMQMKPAGVKGQFIKKAVLASTMGPGIKLNLQSILN 232
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_THEMA (50S ribosomal protein L1 OS=Thermotoga maritima GN=rplA PE=3 SV=1) HSP 1 Score: 157.147 bits (396), Expect = 9.484e-38 Identity = 75/140 (53.57%), Postives = 101/140 (72.14%), Query Frame = -1 Query: 349 ADLVGGDDLIEQI-KGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEML 765 AD VG +DL+E+I K GF++FD IA+PDMM + LGKILGPRGLMP+PK+GTVT + +A++EFKKG++E R DKTG +HIP GK F + L N +AA+K I KP G KG + K + S+MGP I+LN++ +L Sbjct: 92 ADYVGAEDLVEKIEKEGFLDFDVAIATPDMMRIIGRLGKILGPRGLMPSPKSGTVTQEVAEAVKEFKKGRIEVRTDKTGNIHIPVGKRSFDNEKLKENIIAAIKQIMQMKPAGVKGQFIKKVVLASTMGPGIKLNLQSLL 231
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_PHEZH (50S ribosomal protein L1 OS=Phenylobacterium zucineum (strain HLK1) GN=rplA PE=3 SV=1) HSP 1 Score: 157.147 bits (396), Expect = 9.484e-38 Identity = 70/138 (50.72%), Postives = 100/138 (72.46%), Query Frame = -1 Query: 352 ADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEM 765 A++VG +DL+E+I+GGFM+FD++IA+PDMM V LGK+LGPRGLMPNP+ GTVT N+ QA+++ K G +E+R +K GIVH GKA F+E+ L N A V ++ KP GAKG Y K + S+MGP ++++ + Sbjct: 90 AEVVGAEDLVERIQGGFMDFDRVIATPDMMALVGRLGKVLGPRGLMPNPRVGTVTPNVGQAVKDAKGGSIEFRVEKAGIVHAGIGKASFTEEQLTANVKAMVDALNKAKPSGAKGTYVKKVSLSSTMGPGFKIDVASL 227
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_CAUCR (50S ribosomal protein L1 OS=Caulobacter crescentus GN=rplA PE=3 SV=1) HSP 1 Score: 157.147 bits (396), Expect = 9.484e-38 Identity = 73/138 (52.90%), Postives = 101/138 (73.19%), Query Frame = -1 Query: 352 ADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEM 765 A+ VG DDL E+I GGFM+FD++IA+PDMM V LGK+LGPRGLMPNPK GTVT N+ QA+++ K G VE+R +K GIVH GKA F+++ L IN A ++++ +KP GAKGV+ K + S+MGP +++I + Sbjct: 90 AEHVGADDLYEKIAGGFMDFDRVIATPDMMALVGRLGKVLGPRGLMPNPKVGTVTPNVAQAVKDAKGGAVEFRVEKAGIVHAGIGKASFTDEALAINVKALIEALNRSKPSGAKGVFIKRVGLSSTMGPGFKVDISSI 227
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_CAUCN (50S ribosomal protein L1 OS=Caulobacter crescentus (strain NA1000 / CB15N) GN=rplA PE=3 SV=1) HSP 1 Score: 157.147 bits (396), Expect = 9.484e-38 Identity = 73/138 (52.90%), Postives = 101/138 (73.19%), Query Frame = -1 Query: 352 ADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEM 765 A+ VG DDL E+I GGFM+FD++IA+PDMM V LGK+LGPRGLMPNPK GTVT N+ QA+++ K G VE+R +K GIVH GKA F+++ L IN A ++++ +KP GAKGV+ K + S+MGP +++I + Sbjct: 90 AEHVGADDLYEKIAGGFMDFDRVIATPDMMALVGRLGKVLGPRGLMPNPKVGTVTPNVAQAVKDAKGGAVEFRVEKAGIVHAGIGKASFTDEALAINVKALIEALNRSKPSGAKGVFIKRVGLSSTMGPGFKVDISSI 227
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_THEP1 (50S ribosomal protein L1 OS=Thermotoga petrophila (strain RKU-1 / ATCC BAA-488 / DSM 13995) GN=rplA PE=3 SV=1) HSP 1 Score: 156.762 bits (395), Expect = 1.239e-37 Identity = 75/140 (53.57%), Postives = 102/140 (72.86%), Query Frame = -1 Query: 349 ADLVGGDDLIEQI-KGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEML 765 AD VG +DL+E+I K GF++FD IA+PDMM + LGKILGPRGLMP+PK+GTVT + +A++EFKKG++E R DKTG +HIP GK F + L N ++AV+ I KP G KG + K A + S+MGP I+LN++ +L Sbjct: 92 ADYVGAEDLVEKIEKEGFLDFDVAIATPDMMRVIGRLGKILGPRGLMPSPKSGTVTQEVAEAVKEFKKGRIEVRTDKTGNIHIPVGKRSFDNEKLKENIISAVRQIMQMKPAGVKGQFIKKAVLSSTMGPGIKLNLQSLL 231
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_THETH (50S ribosomal protein L1 OS=Thermus thermophilus GN=rplA PE=1 SV=3) HSP 1 Score: 154.451 bits (389), Expect = 6.147e-37 Identity = 71/135 (52.59%), Postives = 103/135 (76.30%), Query Frame = -1 Query: 364 ADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVAS-LGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLN 765 AD VGG+++I++I G+M+FD ++A+PD+M V S LG+ILGPRGL+PNPKAGTV NI + I E K G++E+R DKTG +H P GKA F + L N A ++++EA+KP+GAKG + +S Y+ ++MGPS+R+N Sbjct: 92 ADYVGGEEIIQKILDGWMDFDAVVATPDVMGAVGSKLGRILGPRGLLPNPKAGTVGFNIGEIIREIKAGRIEFRNDKTGAIHAPVGKASFPPEKLADNIRAFIRALEAHKPEGAKGTFLRSVYVTTTMGPSVRIN 226 The following BLAST results are available for this feature:
BLAST of CN188884 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >CN188884 ID=CN188884; Name=CN188884; organism=Citrus sinensis; type=EST; length=765bpback to top |