CN188884
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_THET8 (50S ribosomal protein L1 OS=Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) GN=rplA PE=1 SV=3) HSP 1 Score: 154.451 bits (389), Expect = 6.147e-37 Identity = 71/135 (52.59%), Postives = 103/135 (76.30%), Query Frame = -1 Query: 364 ADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVAS-LGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLN 765 AD VGG+++I++I G+M+FD ++A+PD+M V S LG+ILGPRGL+PNPKAGTV NI + I E K G++E+R DKTG +H P GKA F + L N A ++++EA+KP+GAKG + +S Y+ ++MGPS+R+N Sbjct: 92 ADYVGGEEIIQKILDGWMDFDAVVATPDVMGAVGSKLGRILGPRGLLPNPKAGTVGFNIGEIIREIKAGRIEFRNDKTGAIHAPVGKASFPPEKLADNIRAFIRALEAHKPEGAKGTFLRSVYVTTTMGPSVRIN 226
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_THET2 (50S ribosomal protein L1 OS=Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) GN=rplA PE=1 SV=3) HSP 1 Score: 154.451 bits (389), Expect = 6.147e-37 Identity = 71/135 (52.59%), Postives = 103/135 (76.30%), Query Frame = -1 Query: 364 ADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVAS-LGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLN 765 AD VGG+++I++I G+M+FD ++A+PD+M V S LG+ILGPRGL+PNPKAGTV NI + I E K G++E+R DKTG +H P GKA F + L N A ++++EA+KP+GAKG + +S Y+ ++MGPS+R+N Sbjct: 92 ADYVGGEEIIQKILDGWMDFDAVVATPDVMGAVGSKLGRILGPRGLLPNPKAGTVGFNIGEIIREIKAGRIEFRNDKTGAIHAPVGKASFPPEKLADNIRAFIRALEAHKPEGAKGTFLRSVYVTTTMGPSVRIN 226
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_MOOTA (50S ribosomal protein L1 OS=Moorella thermoacetica (strain ATCC 39073) GN=rplA PE=3 SV=1) HSP 1 Score: 154.066 bits (388), Expect = 8.029e-37 Identity = 74/134 (55.22%), Postives = 97/134 (72.39%), Query Frame = -1 Query: 364 ADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLN 765 AD VG +DL+E+I+GG+++FD IA+PDMM V LG+ILGPRGLMPNPKAGTVT +I +A++E K GK+E+R DKT I+H P GKA F L NF A + ++ KP AKG Y KS + ++MGP IR+N Sbjct: 92 ADFVGAEDLVEKIQGGWLDFDVAIATPDMMGLVGRLGRILGPRGLMPNPKAGTVTMDIARAVKEVKAGKIEFRVDKTAIIHAPIGKASFEASKLKENFQALMDALLRAKPATAKGQYLKSVSLATTMGPGIRVN 225
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_DESMR (50S ribosomal protein L1 OS=Desulfovibrio magneticus (strain ATCC 700980 / DSM 13731 / RS-1) GN=rplA PE=3 SV=1) HSP 1 Score: 154.066 bits (388), Expect = 8.029e-37 Identity = 68/138 (49.28%), Postives = 98/138 (71.01%), Query Frame = -1 Query: 352 ADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEM 765 AD VGGDDLIE++K GF++FD +A+PDMM V +GKILGPRGLMPN K GTV+ +I +A+ E K GKVE++ DK G++H+P GK F + LL NF A + ++ KP AKG Y ++ + ++MGP I+++ + + Sbjct: 92 ADFVGGDDLIEKVKNGFLDFDSAVATPDMMASVGKIGKILGPRGLMPNAKTGTVSFDIGKAVSELKAGKVEFKVDKAGVLHVPLGKRSFGPEKLLDNFRAVIDAVMRLKPSAAKGTYLQAMALATTMGPGIKVDTQSV 229
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_HALOH (50S ribosomal protein L1 OS=Halothermothrix orenii (strain H 168 / OCM 544 / DSM 9562) GN=rplA PE=3 SV=1) HSP 1 Score: 153.295 bits (386), Expect = 1.369e-36 Identity = 70/140 (50.00%), Postives = 98/140 (70.00%), Query Frame = -1 Query: 346 ADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEMLD 765 AD+VG DDL E+IKGG+++FD IA+PDMM V LG+ILGP+GLMPNPK GTVT + +A+++ K GK+EYR DK G +H+P GK F DDL+ NF + + +P AKG Y +S + S+MGP I+++ + +D Sbjct: 92 ADVVGADDLAEKIKGGWLDFDVAIATPDMMSVVGKLGRILGPKGLMPNPKVGTVTFELEKAVKDAKAGKIEYRVDKNGNIHLPIGKVSFPVDDLMENFKTIIDVLLRERPASAKGRYMRSVTVSSTMGPGIKVDPNQAID 231
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_CAUSK (50S ribosomal protein L1 OS=Caulobacter sp. (strain K31) GN=rplA PE=3 SV=1) HSP 1 Score: 153.295 bits (386), Expect = 1.369e-36 Identity = 73/135 (54.07%), Postives = 98/135 (72.59%), Query Frame = -1 Query: 361 ADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNI 765 A+ VG +DL E+I GGFM+FD++IA+PDMM V LGK+LGPRGLMPNPK GTVT N+ QA+++ K G VE+R +K GIVH GK F+++ LLIN A V ++ KP GAKG+Y K + S+MGP +++I Sbjct: 90 AEHVGAEDLYEKIVGGFMDFDRVIATPDMMALVGRLGKVLGPRGLMPNPKVGTVTPNVGQAVKDAKGGAVEFRVEKAGIVHAGIGKVSFTDEALLINVKAMVDALVKAKPAGAKGIYVKRIGLSSTMGPGFKIDI 224
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_HELPS (50S ribosomal protein L1 OS=Helicobacter pylori (strain Shi470) GN=rplA PE=3 SV=1) HSP 1 Score: 152.525 bits (384), Expect = 2.336e-36 Identity = 73/142 (51.41%), Postives = 99/142 (69.72%), Query Frame = -1 Query: 340 ADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEMLDYK 765 AD+VGGDDL E+IK G ++FD +IA+PDMM V +G+ILGP+GLMPNPK GTVT +I +A+ K G+V +R DK G VH P GKA F E+ + N L VK+I KP AKG Y ++A + +M PS+ L+ +E++D K Sbjct: 93 ADVVGGDDLAEEIKNGRIDFDMVIATPDMMAVVGKVGRILGPKGLMPNPKTGTVTMDIAKAVSNAKSGQVNFRVDKKGNVHAPIGKASFPEEKIKENMLELVKTINRLKPSSAKGKYIRNATLSLTMSPSVNLDAQELMDIK 234
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_DEIGD (50S ribosomal protein L1 OS=Deinococcus geothermalis (strain DSM 11300) GN=rplA PE=3 SV=1) HSP 1 Score: 152.525 bits (384), Expect = 2.336e-36 Identity = 70/136 (51.47%), Postives = 100/136 (73.53%), Query Frame = -1 Query: 361 ADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVAS-LGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNI 765 AD+VGG+DLI++I GFM+FD ++A+PDMM ++ L ++LGPRGL+PNPK+GTV ++ + K G++E+R DKTG+VH P GKA F +L N+ A + ++EA KP AKGVY +SAY+ S+MGPSI L + Sbjct: 92 ADVVGGEDLIDRIANGFMDFDAVVATPDMMAQIGQKLARLLGPRGLLPNPKSGTVGPDVAGMVRGLKAGRIEFRNDKTGVVHAPIGKASFDPSNLSANYRALLSALEAAKPAAAKGVYLRSAYLTSTMGPSIPLTL 227
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_HELPY (50S ribosomal protein L1 OS=Helicobacter pylori GN=rplA PE=1 SV=1) HSP 1 Score: 152.14 bits (383), Expect = 3.051e-36 Identity = 73/142 (51.41%), Postives = 99/142 (69.72%), Query Frame = -1 Query: 340 ADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEMLDYK 765 AD+VGGDDL E+IK G ++FD +IA+PDMM V +G+ILGP+GLMPNPK GTVT +I +A+ K G+V +R DK G VH P GKA F E+ + N L VK+I KP AKG Y ++A + +M PS+ L+ +E++D K Sbjct: 93 ADVVGGDDLAEEIKNGRIDFDMVIATPDMMAVVGKVGRILGPKGLMPNPKTGTVTMDIAKAVSNAKSGQVNFRVDKKGNVHAPIGKASFPEEKIKENMLELVKTINRLKPSSAKGKYIRNAALSLTMSPSVSLDAQELMDIK 234
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_HELPJ (50S ribosomal protein L1 OS=Helicobacter pylori J99 GN=rplA PE=3 SV=1) HSP 1 Score: 152.14 bits (383), Expect = 3.051e-36 Identity = 73/142 (51.41%), Postives = 99/142 (69.72%), Query Frame = -1 Query: 340 ADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEMLDYK 765 AD+VGGDDL E+IK G ++FD +IA+PDMM V +G+ILGP+GLMPNPK GTVT +I +A+ K G+V +R DK G VH P GKA F E+ + N L VK+I KP AKG Y ++A + +M PS+ L+ +E++D K Sbjct: 93 ADVVGGDDLAEEIKNGRIDFDMVIATPDMMAVVGKVGRILGPKGLMPNPKTGTVTMDIAKAVTNAKSGQVNFRVDKKGNVHAPIGKASFPEEKIKENMLELVKTINRLKPSSAKGKYIRNAALSLTMSPSVNLDAQELMDIK 234 The following BLAST results are available for this feature:
BLAST of CN188884 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >CN188884 ID=CN188884; Name=CN188884; organism=Citrus sinensis; type=EST; length=765bpback to top |