CN188884
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_AQUAE (50S ribosomal protein L1 OS=Aquifex aeolicus GN=rplA PE=3 SV=1) HSP 1 Score: 150.984 bits (380), Expect = 6.797e-36 Identity = 74/140 (52.86%), Postives = 103/140 (73.57%), Query Frame = -1 Query: 349 ADLVGGDDLIEQI-KGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEML 765 AD VGGD+LI +I K + +FD IA+P+MM KVA LG+ILGPRGLMP+PK GTVTTN+ QAI++ K+G+VE++ DK G VH+P GK F ++ L+ N AA+ ++ KP GAKG Y K+ + +M PS++L+I E+L Sbjct: 95 ADYVGGDELINKILKEEWTDFDVAIATPEMMPKVAKLGRILGPRGLMPSPKTGTVTTNVEQAIKDAKRGRVEFKVDKAGNVHMPVGKISFEKEKLIDNLYAAIDAVVRAKPPGAKGQYIKNMAVSLTMSPSVKLDINEVL 234
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_ALKMQ (50S ribosomal protein L1 OS=Alkaliphilus metalliredigens (strain QYMF) GN=rplA PE=3 SV=1) HSP 1 Score: 150.984 bits (380), Expect = 6.797e-36 Identity = 71/135 (52.59%), Postives = 98/135 (72.59%), Query Frame = -1 Query: 364 ADLVGGDDLIEQIKG-GFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLN 765 AD VG DDL+ +I+G + +FD ++A+PDMM V LG++LGP+GLMPNPK+GTVT ++ +A++E K GKVEYR DKT I+H+P GKA F E L NF ++++ KP AKG Y+KS + S+MGP IR+N Sbjct: 92 ADYVGSDDLVAKIQGENWFDFDVVVATPDMMGVVGRLGRVLGPKGLMPNPKSGTVTFDLERAVKEIKAGKVEYRLDKTNIIHVPIGKASFEEAQLAENFKTLLEAVAKAKPAAAKGQYFKSVSVTSTMGPGIRVN 226
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_SPHWW (50S ribosomal protein L1 OS=Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273) GN=rplA PE=3 SV=1) HSP 1 Score: 150.599 bits (379), Expect = 8.877e-36 Identity = 71/138 (51.45%), Postives = 100/138 (72.46%), Query Frame = -1 Query: 352 ADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEM 765 A++VG +DL+E I+GG ++FD+ IA+PDMM V LGKILGP+GLMPNPK GTVT N+ +A++ K G+VE+R +K GI+H GKA F +DL NF A V +I KP GAKG Y K A + S+MGP +++++ ++ Sbjct: 92 AEVVGAEDLLETIQGGTVDFDRCIATPDMMGLVGRLGKILGPKGLMPNPKLGTVTMNVAEAVKAAKGGQVEFRVEKAGIIHSGIGKASFPAEDLRANFDAFVDAIVKAKPTGAKGKYLKKAAVSSTMGPGVKIDVADV 229
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_GRABC (50S ribosomal protein L1 OS=Granulibacter bethesdensis (strain ATCC BAA-1260 / CGDNIH1) GN=rplA PE=3 SV=1) HSP 1 Score: 150.599 bits (379), Expect = 8.877e-36 Identity = 72/138 (52.17%), Postives = 96/138 (69.57%), Query Frame = -1 Query: 352 ADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEM 765 AD+VG +DL E ++ G +EFD+ IA+PDMM V LGKILGPRGLMPNPK GTVT ++ A+ K G++E+RA+K GI+H GKA F D L+ N A V +I+ KP GAKG Y + A + SSMGP +RL++ + Sbjct: 91 ADVVGAEDLAELVQNGTIEFDRCIATPDMMALVGRLGKILGPRGLMPNPKLGTVTMDVKGAVTAAKSGQIEFRAEKAGIIHAGIGKASFDADKLVENIRALVDAIQKAKPTGAKGTYLQKAALSSSMGPGMRLDVSSL 228
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_BREBN (50S ribosomal protein L1 OS=Brevibacillus brevis (strain 47 / JCM 6285 / NBRC 100599) GN=rplA PE=3 SV=1) HSP 1 Score: 150.599 bits (379), Expect = 8.877e-36 Identity = 67/136 (49.26%), Postives = 96/136 (70.59%), Query Frame = -1 Query: 358 ADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIK 765 AD VG D+I +I+GG+ +FD ++A+PDMM +V LG++LGP+GLMPNPK GTVT ++ +A+ E K GK+EYR DK G +H P GKA F D L+ N A +++ KP AKGVY ++ + S+MGP +R+ +K Sbjct: 92 ADFVGDADMIAKIQGGWFDFDVVVATPDMMGEVGKLGRVLGPKGLMPNPKTGTVTFDVTKAVNEIKAGKIEYRVDKAGNIHAPIGKASFDADKLVENLAALTEALNRAKPAAAKGVYMRNVTLSSTMGPGVRVAVK 227
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_ALKOO (50S ribosomal protein L1 OS=Alkaliphilus oremlandii (strain OhILAs) GN=rplA PE=3 SV=1) HSP 1 Score: 150.599 bits (379), Expect = 8.877e-36 Identity = 71/141 (50.35%), Postives = 101/141 (71.63%), Query Frame = -1 Query: 346 ADLVGGDDLIEQIKG-GFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEMLD 765 AD VGGD+L+ +I+G + EFD ++A+PDMM V LG++LGP+GLMPNPK+GTVT ++ +A+ E K GKVEYR DKT I+H+P GKA F E L+ NF + ++ KP AKG Y KS + S+MGP I++N ++++ Sbjct: 92 ADYVGGDELVAKIQGENWFEFDVVVATPDMMGVVGRLGRVLGPKGLMPNPKSGTVTFDLTKAVNEIKAGKVEYRLDKTNIIHVPLGKASFEETQLVENFRTLLDAVVKAKPAAAKGQYLKSITVTSTMGPGIKINPLKVME 232
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_ZYMMO (50S ribosomal protein L1 OS=Zymomonas mobilis GN=rplA PE=3 SV=1) HSP 1 Score: 150.214 bits (378), Expect = 1.159e-35 Identity = 71/138 (51.45%), Postives = 99/138 (71.74%), Query Frame = -1 Query: 352 ADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEM 765 A++VG +DL+E I+GG ++FD+ IA+PDMM V LGKILGP+G+MPNPK GTVT N+ A++ K G+VEYR D+TGI+H GKA FS +D+ NF A + ++ KP GAKG Y K I S+MGP + ++I ++ Sbjct: 92 AEVVGAEDLMEAIQGGSIDFDRCIATPDMMGVVGRLGKILGPKGMMPNPKLGTVTMNVADAVKAAKGGQVEYRVDRTGIIHSGIGKASFSAEDIRANFDALIDALLKAKPAGAKGRYVKKVAISSTMGPGVSIDIADL 229
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_HELMI (50S ribosomal protein L1 OS=Heliobacterium modesticaldum (strain ATCC 51547 / Ice1) GN=rplA PE=3 SV=1) HSP 1 Score: 150.214 bits (378), Expect = 1.159e-35 Identity = 69/134 (51.49%), Postives = 96/134 (71.64%), Query Frame = -1 Query: 364 ADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLN 765 AD VG +DL+E+I+GG+++FD +A+PD+M V LG++LGP+GLMPNPK GTVT ++ +AI+E K GK+EYR DKTGI+H P GKA F LL N+ + ++ KP AKG Y KS + S+M P +R+N Sbjct: 92 ADAVGAEDLVEKIQGGWLDFDVAVATPDVMGLVGKLGRLLGPKGLMPNPKTGTVTFDVARAIQEIKAGKIEYRVDKTGIIHAPIGKASFDVQKLLENYQTLLDTLIKAKPAAAKGQYIKSITLSSTMSPGVRVN 225
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_DEIDV (50S ribosomal protein L1 OS=Deinococcus deserti (strain VCD115 / DSM 17065 / LMG 22923) GN=rplA PE=3 SV=1) HSP 1 Score: 150.214 bits (378), Expect = 1.159e-35 Identity = 71/136 (52.21%), Postives = 99/136 (72.79%), Query Frame = -1 Query: 361 ADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVAS-LGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNI 765 AD+VG D+LIE+I GGFMEFD ++A+PDMM V L ++LGPRGL+PNPK+GTV ++ + K G++E+R DKTG+VH P GKA F +L N+ A + ++EA KP AKGV+ +SAY+ ++MGPSI L + Sbjct: 92 ADVVGSDELIERIAGGFMEFDAVVATPDMMAAVGQKLARLLGPRGLLPNPKSGTVGPDVTGMVRGLKAGRIEFRNDKTGVVHAPIGKASFDPSNLSANYGALISALEAAKPGTAKGVFLRSAYMTTTMGPSIPLTL 227
BLAST of CN188884 vs. ExPASy Swiss-Prot
Match: RL1_SYNWW (50S ribosomal protein L1 OS=Syntrophomonas wolfei subsp. wolfei (strain Goettingen) GN=rplA PE=3 SV=1) HSP 1 Score: 149.828 bits (377), Expect = 1.514e-35 Identity = 69/134 (51.49%), Postives = 94/134 (70.15%), Query Frame = -1 Query: 364 ADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIEANKPKGAKGVYWKSAYICSSMGPSIRLN 765 AD VGG+DL E+I+GG+ +FD +A+PDMM V +GKILGPRGLMPNPKAGTVT +I + I+E K G++EYR DK+ IVH P G+ F D L N A +++ +P AKG Y +S +CS+M P +++N Sbjct: 91 ADYVGGEDLAEKIQGGWFDFDVAVATPDMMAVVGKMGKILGPRGLMPNPKAGTVTFDIERTIKELKAGRIEYRVDKSAIVHAPIGRISFEVDKLQENLNAFAEALLKARPAAAKGQYMRSVTVCSTMSPGVKIN 224 The following BLAST results are available for this feature:
BLAST of CN188884 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >CN188884 ID=CN188884; Name=CN188884; organism=Citrus sinensis; type=EST; length=765bpback to top |