CN182104

Overview
NameCN182104
Unique NameCN182104
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length288
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CN182104 vs. ExPASy Swiss-Prot
Match: VATL_MAIZE (V-type proton ATPase 16 kDa proteolipid subunit (Fragment) OS=Zea mays PE=2 SV=2)

HSP 1 Score: 73.9442 bits (180), Expect = 2.800e-13
Identity = 40/52 (76.92%), Postives = 41/52 (78.85%), Query Frame = -1 
Query:  133 GIVGDAGVRANAQQPKLFVGMXXXXXXXXXXXLYGLIVGIILSSRAGQSRAE 288
            GIVGDAGVRANAQQPKLFVGM           LYGLIVGIILSSRAGQSRA+
Sbjct:   58 GIVGDAGVRANAQQPKLFVGMILILIFAEALALYGLIVGIILSSRAGQSRAD 109
[Close]
BLAST of CN182104 vs. ExPASy Swiss-Prot
Match: VATL_KALDA (V-type proton ATPase 16 kDa proteolipid subunit OS=Kalanchoe daigremontiana PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 2.800e-13
Identity = 40/52 (76.92%), Postives = 41/52 (78.85%), Query Frame = -1 
Query:  133 GIVGDAGVRANAQQPKLFVGMXXXXXXXXXXXLYGLIVGIILSSRAGQSRAE 288
            GIVGDAGVRANAQQPKLFVGM           LYGLIVGIILSSRAGQSRA+
Sbjct:  114 GIVGDAGVRANAQQPKLFVGMILILIFAEALALYGLIVGIILSSRAGQSRAD 165
[Close]
BLAST of CN182104 vs. ExPASy Swiss-Prot
Match: VATL_BETVU (V-type proton ATPase 16 kDa proteolipid subunit OS=Beta vulgaris GN=VMAC1 PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 2.800e-13
Identity = 40/52 (76.92%), Postives = 41/52 (78.85%), Query Frame = -1 
Query:  133 GIVGDAGVRANAQQPKLFVGMXXXXXXXXXXXLYGLIVGIILSSRAGQSRAE 288
            GIVGDAGVRANAQQPKLFVGM           LYGLIVGIILSSRAGQSRA+
Sbjct:  114 GIVGDAGVRANAQQPKLFVGMILILIFAEALALYGLIVGIILSSRAGQSRAD 165
[Close]
BLAST of CN182104 vs. ExPASy Swiss-Prot
Match: VATL_AVESA (V-type proton ATPase 16 kDa proteolipid subunit OS=Avena sativa GN=VATP-P1 PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 2.800e-13
Identity = 40/52 (76.92%), Postives = 41/52 (78.85%), Query Frame = -1 
Query:  133 GIVGDAGVRANAQQPKLFVGMXXXXXXXXXXXLYGLIVGIILSSRAGQSRAE 288
            GIVGDAGVRANAQQPKLFVGM           LYGLIVGIILSSRAGQSRA+
Sbjct:  114 GIVGDAGVRANAQQPKLFVGMILILIFAEALALYGLIVGIILSSRAGQSRAD 165
The following BLAST results are available for this feature:
BLAST of CN182104 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 14
Match NameE-valueIdentityDescription
VATL_MAIZE2.800e-1376.92V-type proton ATPase 16 kDa proteolipid subunit (F... [more]
VATL_KALDA2.800e-1376.92V-type proton ATPase 16 kDa proteolipid subunit OS... [more]
VATL_BETVU2.800e-1376.92V-type proton ATPase 16 kDa proteolipid subunit OS... [more]
VATL_AVESA2.800e-1376.92V-type proton ATPase 16 kDa proteolipid subunit OS... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS04_0001P09_f Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001P09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN182104 ID=CN182104; Name=CN182104; organism=Citrus sinensis; type=EST; length=288bp
ATTATGGAATCCATCATGTACACGAGTTTATCAACTAAACTAAACAAATC
CAAAAAAAATCAACTCATACAGCTTCAATTTTCCTCAGACTGGATAAACG
TTACAAGATAACTGTTTTGACCTTTTCTTTTATTCTGCCCGAGATTGGCC
TGCTCGAGATGAGAGGATGATTCCCACGATGAGACCATAAAGAGCGAGAG
CTTCGGCAAAGATGAGAATAAGAATCATTCCCACAAACAACTTAGGCTGC
TGTGCGTTAGCCCTAACTCCCGCATCACCAACAATTCC
back to top