CN182100

Overview
NameCN182100
Unique NameCN182100
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length784
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CN182100 vs. ExPASy Swiss-Prot
Match: ERG1_SCHPO (Probable squalene monooxygenase OS=Schizosaccharomyces pombe GN=SPBC713.12 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.502e-11
Identity = 41/120 (34.17%), Postives = 62/120 (51.67%), Query Frame = -1 
Query:  416 NYLESFYTLRKPVASTINTLAGALYQVFSASPDEARKEMRQACFDYLSLGGIFSSGPVSLLSGLNPRPLILVFHFFAVAIYGVGRILLPFPS---PYRFWIGARIITSASGIIFPIMKAE 766
            N +  F+  RK  +  IN L+ ALY++F+   +   K +   C DY   GG    GP+ LL GL+  P  L+ HF+AV +YG+ + +L  P+   P R      I   AS +I P + +E
Sbjct:  336 NQMNKFHWKRKGYSFVINVLSIALYKLFTPK-NRYMKALESGCIDYFKRGGNCVEGPIRLLGGLDHSPSHLIGHFYAVCLYGIYQYVLSGPALLMPVRIIESLLIFLQASLVIIPYILSE 454
The following BLAST results are available for this feature:
BLAST of CN182100 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 11
Match NameE-valueIdentityDescription
ERG1_SCHPO3.502e-1134.17Probable squalene monooxygenase OS=Schizosaccharom... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0001P07_f Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001P07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN182100 ID=CN182100; Name=CN182100; organism=Citrus sinensis; type=EST; length=784bp
CTTTTAAAGGGTCCGCGGTCTTACATGACGCGAGATATTGAGCTTTCTTT
TCACATAAATCAAAACATTTGTAAGCCTTTTCTTGATTACAATAGCCTAA
GAATAATGTTTCAGAGAAAAAAAAATTATATACCATAATTTCAGGCTACT
GTTTATTAACATCCTAAAGAAACAAAAATCCATAAATACAAAACAAAACA
ACAAAAAAAATGTAGTACCGCACATCAATTCTTCTAGGCATTGGCCTCCC
TCAAGAATTGAACAAAGGGAGGCAGATACCAGTGCAGCCTAGCTTGTCTC
GACGGATGTTAATTCGTACTACTTCAATTTTCTGCAAACTCAGATTTCAG
TTACTAGGTGGAGCTTGGTAATAATATGCAGGAACAGTTGCAGGGAAGAA
CATTTGTCGCAACCCTTCTGCCTTCATAATAGGGAAGATGATTCCCGATG
CACTCGTAATTATTCTAGCTCCAATCCAGAAGCGATAAGGTGAAGGAAAT
GGCAGTAAAATTCGACCAACACCATATATTGCAACGGCAAAGAAATGGAA
AACCAAGATTAATGGACGGGGATTTAAGCCTGAGAGCAGAGAGACTGGTC
CTGACGAGAAGATACCTCCAAGACTTAGATAATCAAAGCAAGCCTGGCGC
ATTTCCTTCCTTGCTTCATCAGGAGATGCAGAAAATACCTGGTACAAGGC
ACCGGCCAAGGTATTGATGGTGGATGCCACTGGCTTACGCAAGGTGTAAA
AGGATTCAAGGTAATTGCCGAGAGCTGGTGCATC
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