CN188882

Overview
NameCN188882
Unique NameCN188882
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length725
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig654 contig Csv1_Contig654:448..1163. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN188882 vs. ExPASy Swiss-Prot
Match: RIPK4_MOUSE (Receptor-interacting serine/threonine-protein kinase 4 OS=Mus musculus GN=Ripk4 PE=1 SV=2)

HSP 1 Score: 72.0182 bits (175), Expect = 3.614e-12
Identity = 43/123 (34.96%), Postives = 64/123 (52.03%), Query Frame = -1
Query:  345 NEDE-SIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALDKNKNTALHYAAGYGRKECVALLLEN-GVAVTLQNMDGKTPIDVAKLNSQHDVLKLL 707
            +ED+ + +H  A  GD    +  L   A  +E D EGRT +H AC +G+    + LL  G +V    K+    LHYAA  G    V LL +  GV+V  Q +DG+TP+ +A     + V ++L
Sbjct:  503 DEDQWTALHFAAQNGDEASTRLLLEKNASVNEVDFEGRTPMHVACQHGQENIVRTLLRRGVDVGLQGKDAWLPLHYAAWQGHLPIVKLLAKQPGVSVNAQTLDGRTPLHLAAQRGHYRVARIL 625          
BLAST of CN188882 vs. ExPASy Swiss-Prot
Match: ANR11_HUMAN (Ankyrin repeat domain-containing protein 11 OS=Homo sapiens GN=ANKRD11 PE=1 SV=2)

HSP 1 Score: 71.633 bits (174), Expect = 4.720e-12
Identity = 49/123 (39.84%), Postives = 64/123 (52.03%), Query Frame = -1
Query:  330 ESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALDKNKNTALHYAAGYGRKECVALLLENGVAVTLQNMDGKTPIDVAKLNSQHDVLKLLEKDAF 698
            E+ +H  A  GDA  +K  ++ GAD + +D  G TALH AC  G    A+ LL AGA V+    + +T LH AA  G  + V LLL  G      N  G+TP+ VA  NS   V  LL K  +
Sbjct:  169 ETRLHRAAIRGDARRIKELISEGADVNVKDFAGWTALHEACNRGYYDVAKQLLAAGAEVNTKGLDDDTPLHDAANNGHYKVVKLLLRYGGNPQQSNRKGETPLKVA--NSPTMVNLLLGKGTY 289          
BLAST of CN188882 vs. ExPASy Swiss-Prot
Match: ANR52_CHICK (Serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit C OS=Gallus gallus GN=ANKRD52 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 6.165e-12
Identity = 39/111 (35.14%), Postives = 64/111 (57.66%), Query Frame = -1
Query:  366 SIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALDKNKNTALHYAA-GYGRKECVALLLENGVAVTLQNMDGKTPIDVAKLNSQ 695
            +++H  A+ G  E +++ L  G + DE +S G TALH AC  G+   A  L+  GANV+  ++   T LH+AA       C+ LL+ NG  V  Q+ +GK+P+ +A ++ +
Sbjct:  208 TLLHTAAASGQIEVVRHLLRLGVEIDEPNSFGNTALHIACYMGQDAVANELVNYGANVNQPNEKGFTPLHFAAVSTNGALCLELLVNNGADVNFQSKEGKSPLHMAAIHGR 318          

HSP 2 Score: 67.3958 bits (163), Expect = 8.902e-11
Identity = 42/118 (35.59%), Postives = 62/118 (52.54%), Query Frame = -1
Query:  345 VHHTASVGDAEGLKNALAAG--AD-KDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALDKNKNTALHYAAGYGRKECVALLLENGVAVTLQNMDGKTPIDVAKLNSQHDVLKLL 689
            +H  A+ G+ + L   + +G  AD  D  D  G+T L  A   G V C  +LLE G+  DA DK   TALH  A  G ++C+A LL++   V  ++  G+TPI  A      ++L+ L
Sbjct:  655 LHAAAANGNTDSLHLLIDSGERADITDVMDIHGQTPLMLAIMNGHVDCVHLLLEKGSTADAADKRGRTALHRGAVTGCEDCLAALLDHDAFVLCRDFKGRTPIHFASACGHLEILRTL 772          
BLAST of CN188882 vs. ExPASy Swiss-Prot
Match: UACA_BOVIN (Uveal autoantigen with coiled-coil domains and ankyrin repeats protein OS=Bos taurus GN=UACA PE=1 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 8.051e-12
Identity = 42/120 (35.00%), Postives = 60/120 (50.00%), Query Frame = -1
Query:  345 EDESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALDKNKNTALHYAAGYGRKECVALLLENGVAVTLQNMDGKTPIDVAKLNSQHDVLKLL 704
            E  S  H  AS G+ E L   L  G D    D+ GR ALH A  YG   C Q LL+     + +D    TALH AA       + LL ++G +V  +++DG+TP+ +A    +  + +LL
Sbjct:   54 EGRSAFHVVASKGNLECLNAILIHGVDITTSDTAGRNALHLAAKYGHALCLQKLLQYNCPTEHVDLQGRTALHDAAMADCPSSIQLLCDHGASVNAKDVDGRTPLVLATQMCRPTICQLL 173          
BLAST of CN188882 vs. ExPASy Swiss-Prot
Match: ANR52_MOUSE (Serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit C OS=Mus musculus GN=Ankrd52 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 8.051e-12
Identity = 41/110 (37.27%), Postives = 63/110 (57.27%), Query Frame = -1
Query:  366 IVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALDKNKNTALHYAA-GYGRKECVALLLENGVAVTLQNMDGKTPIDVAKLNSQ 692
            ++H  A+ G  E +K+ L  GA+ DE ++ G TALH AC  G+   A  L+ AGANV+  +    T LH AA       C+ LL+ NG  V  Q+ +GK+P+ +A ++ +
Sbjct:  209 LLHTAAASGQIEVVKHLLRMGAEIDEPNAFGNTALHIACYLGQDAVAIELVNAGANVNQPNDKGFTPLHVAAVSTNGALCLELLVNNGADVNYQSKEGKSPLHMAAIHGR 318          
BLAST of CN188882 vs. ExPASy Swiss-Prot
Match: ANR52_DANRE (Serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit C OS=Danio rerio GN=ankrd52 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 8.051e-12
Identity = 35/87 (40.23%), Postives = 53/87 (60.92%), Query Frame = -1
Query:  390 KNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALDKNKNTALHYAAGYGRKECVALLLENGVAVTLQNMDGKTPI 650
            ++ L+AG D +  D+ GRT LH A   G ++C  +LL +GA+++  DK   T LHYAA  GR +CV +L+  G  V  ++  G TP+
Sbjct:  407 EHVLSAGFDINTPDNFGRTCLHAAASGGNIECLNLLLSSGADMNKKDKFGRTPLHYAAANGRYQCVVVLVGAGAEVNERDRSGCTPL 493          

HSP 2 Score: 70.8626 bits (172), Expect = 8.051e-12
Identity = 52/162 (32.10%), Postives = 75/162 (46.30%), Query Frame = -1
Query:  288 NEDESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALDKNKNTALHYAAGY-------------------GRKE---CVALLLENGVAVTLQNMDGKTPIDVAKLNSQHDVLKLLEKDAFL*NIGLLGSQHLNG 707
            N   + +H  AS G+ E L   L++GAD +++D  GRT LH+A   G  +C  +L+ AGA V+  D++  T LHY+A                     G KE   CV  LL+NG    L N  G + +  A  +     L+LL +  F      LG +  NG
Sbjct:  421 NFGRTCLHAAASGGNIECLNLLLSSGADMNKKDKFGRTPLHYAAANGRYQCVVVLVGAGAEVNERDRSGCTPLHYSAASTAFCRTDRPHASTHQNQEDGEKESFLCVEHLLDNGADPCLCNTKGYSAVHYAAAHGNKQNLELLLEMCF----NTLGDKESNG 578          

HSP 3 Score: 68.1662 bits (165), Expect = 5.219e-11
Identity = 40/119 (33.61%), Postives = 63/119 (52.94%), Query Frame = -1
Query:  282 GADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALDKNKNTALHYAAGYGRKECVALLLENGVAVTLQNMDGKTPIDVAKLNSQHDVLKLLEKDAFL*NIGL-LGSQH-LNGGF 632
            GAD + +  EG++ LH A  +G    +QIL++ G  +D +D+  NT LH AA YG +  ++ L+ NG     Q + G  P+ +A L    D  + L     L +I L +  +H L+ GF
Sbjct:  296 GADVNMQSKEGKSPLHMAAIHGRFTRSQILIQNGGEIDCVDRYGNTPLHVAAKYGHELLISTLMTNGADTARQGIHGMFPLHLAVLYGSSDCCRKLLSSGQLYSIVLSMSKEHVLSAGF 414          

HSP 4 Score: 67.781 bits (164), Expect = 6.816e-11
Identity = 39/109 (35.78%), Postives = 61/109 (55.96%), Query Frame = -1
Query:  366 VHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALDKNKNTALHYAA-GYGRKECVALLLENGVAVTLQNMDGKTPIDVAKLNSQ 689
            +H  A+ G  + +K  L  GA+ DE ++ G TALH AC  G+   A  L+  GANV+  +    T LH AA       C+ LL+ NG  V +Q+ +GK+P+ +A ++ +
Sbjct:  210 LHAAAASGHVDVVKYLLRNGAEIDEPNAFGNTALHVACYTGQEAVANELVNRGANVNQPNHRGYTPLHLAAVSTNGALCLELLVNNGADVNMQSKEGKSPLHMAAIHGR 318          
BLAST of CN188882 vs. ExPASy Swiss-Prot
Match: UACA_MOUSE (Uveal autoantigen with coiled-coil domains and ankyrin repeats OS=Mus musculus GN=Uaca PE=1 SV=2)

HSP 1 Score: 70.4774 bits (171), Expect = 1.052e-11
Identity = 42/120 (35.00%), Postives = 59/120 (49.17%), Query Frame = -1
Query:  345 EDESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALDKNKNTALHYAAGYGRKECVALLLENGVAVTLQNMDGKTPIDVAKLNSQHDVLKLL 704
            E  S  H  AS G+ E L   L  G D    DS GR ALH A  YG   C Q LL+     + +D    TALH A        + LL ++G +V  +++DG+TP+ +A    +  + +LL
Sbjct:   69 EGRSAFHVVASKGNLECLNAILTHGIDVATRDSAGRNALHLAAKYGHALCLQKLLQYNCPTEHVDLQGRTALHDAVMADCPSSIQLLCDHGASVNAKDIDGRTPLVLATQMCRPTICQLL 188          
BLAST of CN188882 vs. ExPASy Swiss-Prot
Match: ANR12_HUMAN (Ankyrin repeat domain-containing protein 12 OS=Homo sapiens GN=ANKRD12 PE=1 SV=3)

HSP 1 Score: 70.4774 bits (171), Expect = 1.052e-11
Identity = 41/116 (35.34%), Postives = 64/116 (55.17%), Query Frame = -1
Query:  351 ESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALDKNKNTALHYAAGYGRKECVALLLENGVAVTLQNMDGKTPIDVAKLNSQHDVLK 698
            E+ +H  A  GD + +K  ++ GA+ + +D  G T LH AC  G    A+IL+ AGA+V+    + +T LH +A  G ++ V LLL +G      N  G+ P+DVA+      +LK
Sbjct:  186 ETPLHMAAIRGDVKQVKELISLGANVNVKDFAGWTPLHEACNVGYYDVAKILIAAGADVNTQGLDDDTPLHDSASSGHRDIVKLLLRHGGNPFQANKHGERPVDVAETEELELLLK 301          
BLAST of CN188882 vs. ExPASy Swiss-Prot
Match: NOTC4_HUMAN (Neurogenic locus notch homolog protein 4 OS=Homo sapiens GN=NOTCH4 PE=1 SV=2)

HSP 1 Score: 70.0922 bits (170), Expect = 1.373e-11
Identity = 42/104 (40.38%), Postives = 56/104 (53.85%), Query Frame = -1
Query:  342 LKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALDKNKNTALHYAAGYGRKECVALLLENGVAVTLQNMDGKTPIDVAKLNSQHDVLKLLE 653
            ++  +AA AD    D  G+TALH+A      + A+ LL+AGA+ DA D  + T L  AA  G  E   LLL  G A  L++  G  P DVA   +  D+L LLE
Sbjct: 1717 VEELIAAQADVGARDKWGKTALHWAAAVNNARAARSLLQAGADKDAQDNREQTPLFLAAREGAVEVAQLLLGLGAARELRDQAGLAPADVAHQRNHWDLLTLLE 1820          
BLAST of CN188882 vs. ExPASy Swiss-Prot
Match: INVS_DANRE (Inversin OS=Danio rerio GN=invs PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.373e-11
Identity = 42/122 (34.43%), Postives = 63/122 (51.64%), Query Frame = -1
Query:  339 EDESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALDKNKNTALHYAAGYGRKECVALLLENGVAVTLQNMDGKTPIDVAKLNSQHDVLKLLEK 704
            ++ S VH  A  GD   L   +   A +D ED  GRT L +      + CA++LL+AGA ++  D ++ TALH AA  G    + LLL       L++++  TP+ +A  +S    L LL K
Sbjct:    7 QNPSQVHAAAVNGDKNTLHKLITESALRDSEDQFGRTPLMYCVLADRLDCAEVLLKAGAGINKTDHSQRTALHLAAQKGNVRFMKLLLSRHADWRLKDLEEMTPLHLASRHSSSKPLSLLLK 128          
The following BLAST results are available for this feature:
BLAST of CN188882 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 62
Match NameE-valueIdentityDescription
RIPK4_MOUSE3.614e-1234.96Receptor-interacting serine/threonine-protein kina... [more]
ANR11_HUMAN4.720e-1239.84Ankyrin repeat domain-containing protein 11 OS=Hom... [more]
ANR52_CHICK6.165e-1235.14Serine/threonine-protein phosphatase 6 regulatory ... [more]
UACA_BOVIN8.051e-1235.00Uveal autoantigen with coiled-coil domains and ank... [more]
ANR52_MOUSE8.051e-1237.27Serine/threonine-protein phosphatase 6 regulatory ... [more]
ANR52_DANRE8.051e-1240.23Serine/threonine-protein phosphatase 6 regulatory ... [more]
UACA_MOUSE1.052e-1135.00Uveal autoantigen with coiled-coil domains and ank... [more]
ANR12_HUMAN1.052e-1135.34Ankyrin repeat domain-containing protein 12 OS=Hom... [more]
NOTC4_HUMAN1.373e-1140.38Neurogenic locus notch homolog protein 4 OS=Homo s... [more]
INVS_DANRE1.373e-1134.43Inversin OS=Danio rerio GN=invs PE=2 SV=1[more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0006P08_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0006P08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188882 ID=CN188882; Name=CN188882; organism=Citrus sinensis; type=EST; length=725bp
TTTTTTTTTTTTTTTTTAAAAATTGCATATTTGACATAATGAAGCCCTTT
TTTGTAAAAGGACACAAATGTATCATAACGTGTAATTCACTAAACTAAGA
CATTAACATTCCCCACAGATAACTCATTCTGGGGAAGAGATTGTTTATGA
TATAAAATTTTAATGGTAGCAATCAGACAGTAACAAACAGAGCATTGACA
AAAGCATCAAGTCGTGATGACAACCTAATGCCTAACCGGAGTAGATTCAT
CCAACACACTGAAATGCCTATAAAATTGCCGAAATCCACCATTCAGATGC
TGACTTCCCAACAATCCTATATTTTACAGGAAAGCATCCTTCTCCAAAAG
CTTTAGCACATCATGTTGGCTATTGAGCTTGGCAACATCTATGGGAGTCT
TGCCATCCATGTTCTGCAGAGTTACAGCAACACCGTTCTCCAACAGAAGG
GCTACACATTCCTTCCTGCCATATCCGGCTGCATAATGTAGGGCAGTGTT
CTTGTTCTTATCCAAGGCATCCACATTTGCTCCGGCCTCAAGTAGGATTT
GAGCACACTTCACCTCACCATATCCGCAGGCAAAATGCAATGCTGTCCTT
CCTTCTGAATCTTCCTCATCTTTATCAGCACCAGCTGCCAATGCATTTTT
CAAACCCTCAGCATCACCAACACTGGCAGTGTGATGAACAATTGACTCAT
CCTCATTTCCCACTTCTTCTGCTTC
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