CN188880

Overview
NameCN188880
Unique NameCN188880
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length724
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN188880 vs. ExPASy Swiss-Prot
Match: CP4V3_RAT (Cytochrome P450 4V3 OS=Rattus norvegicus GN=Cyp4v3 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.324e-11
Identity = 45/155 (29.03%), Postives = 79/155 (50.97%), Query Frame = -3
Query:  198 EEIKKMDYLQAALSEALRLYPSVPVDHKEVVEDDVFPDGTAVKKGTKVIYAIYAMGRMEAIWGKDCREFKPERWLRDGRYTSESAYKFTAFNGGPRLCLGKDFAYYQMKYAAASIIYRYRVKV-VKGHPVSPKLALTMYMKHGLKVNLCKRDESE 659
            E++KK+ YL   + E LR++PSVP+  + + ED     G  + KGT+ +   YA+ R +  +  D  EF+PER+  +        Y +  F+ GPR C+G+ FA  + K   A I+  + ++   K   +     L +   +G+ + L +R E +
Sbjct:  373 EDLKKLKYLDCVIKETLRVFPSVPLFARSLSEDCEVA-GYKISKGTEAVIIPYALHR-DPRYFPDPEEFQPERFFPENS-QGRHPYAYVPFSAGPRNCIGQKFAVMEEKTILACILREFWIESNQKREELGLAGDLILRPNNGIWIKLKRRHEDD 524          
BLAST of CN188880 vs. ExPASy Swiss-Prot
Match: CP4V2_HUMAN (Cytochrome P450 4V2 OS=Homo sapiens GN=CYP4V2 PE=1 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.324e-11
Identity = 46/155 (29.68%), Postives = 81/155 (52.26%), Query Frame = -3
Query:  198 EEIKKMDYLQAALSEALRLYPSVPVDHKEVVEDDVFPDGTAVKKGTKVIYAIYAMGRMEAIWGKDCREFKPERWLRDGRYTSESAYKFTAFNGGPRLCLGKDFAYYQMKYAAASIIYRYRVKV-VKGHPVSPKLALTMYMKHGLKVNLCKRDESE 659
            E++KK+ YL+  + E LRL+PSVP+  + V ED     G  V KGT+ +   YA+ R +  +  +  EF+PER+  +        Y +  F+ GPR C+G+ FA  + K   + I+  + ++   K   +  +  L +   +G+ + L +R+  E
Sbjct:  373 EDLKKLRYLECVIKETLRLFPSVPLFARSVSEDCEVA-GYRVLKGTEAVIIPYALHR-DPRYFPNPEEFQPERFFPENA-QGRHPYAYVPFSAGPRNCIGQKFAVMEEKTILSCILRHFWIESNQKREELGLEGQLILRPSNGIWIKLKRRNADE 524          
BLAST of CN188880 vs. ExPASy Swiss-Prot
Match: CP4FN_HUMAN (Cytochrome P450 4F22 OS=Homo sapiens GN=CYP4F22 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.324e-11
Identity = 38/143 (26.57%), Postives = 70/143 (48.95%), Query Frame = -3
Query:  231 EEIKKMDYLQAALSEALRLYPSVPVDHKEVVEDDVFPDGTAVKKGTKVIYAIYAMGRMEAIWGKDCREFKPERWLRDGRYTSESAYKFTAFNGGPRLCLGKDFAYYQMKYAAASIIYRYRVKVVKGHPVSPKLALTMYMKHGL 659
            +++ ++ +    + E+LR YP V +  ++  ED   PDG  + KG   + +IY       +W  D + + P R+  D      S   +  F+ GPR C+G+ FA  +++   A  + R+R+ V +   V  K  L +  ++GL
Sbjct:  380 DDLTQLPFTTMCIKESLRQYPPVTLVSRQCTEDIKLPDGRIIPKGIICLVSIYGTHHNPTVW-PDSKVYNPYRFDPDNP-QQRSPLAYVPFSAGPRNCIGQSFAMAELRVVVALTLLRFRLSVDRTRKVRRKPELILRTENGL 520          
BLAST of CN188880 vs. ExPASy Swiss-Prot
Match: CP4D1_DROSI (Cytochrome P450 4d1 OS=Drosophila simulans GN=Cyp4d1 PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.324e-11
Identity = 43/142 (30.28%), Postives = 76/142 (53.52%), Query Frame = -3
Query:  240 EEIKKMDYLQAALSEALRLYPSVPVDHKEVVEDDVFPDGTAVKKGTKVIYAIYAMGRMEAIWGKDCREFKPERWLRDGRYTSE--SAYKFTAFNGGPRLCLGKDFAYYQMKYAAASIIYRYRVKVVKGHPVSPKLALTMYMK 659
            E + ++ Y+   + E LR+YPSVP+  ++V+ED    +G  +  GT +  +   +GR E ++ +    FKPER+  D   T+E  + Y +  F+ GPR C+G+ FA  ++K   A+++  Y V  V      P L   + ++
Sbjct:  361 ELLNQLHYVDLCVKETLRMYPSVPLLGRKVLEDCEI-NGKLIPAGTNIGISPLYLGRREELFSEP-NSFKPERF--DVVTTAEKLNPYAYIPFSAGPRNCIGQKFAMLEIKAIVANVLRHYEVDFVGDSSEPPVLIAELILR 498          
BLAST of CN188880 vs. ExPASy Swiss-Prot
Match: CP4D1_DROME (Cytochrome P450 4d1 OS=Drosophila melanogaster GN=Cyp4d1 PE=2 SV=2)

HSP 1 Score: 69.3218 bits (168), Expect = 2.324e-11
Identity = 43/142 (30.28%), Postives = 76/142 (53.52%), Query Frame = -3
Query:  240 EEIKKMDYLQAALSEALRLYPSVPVDHKEVVEDDVFPDGTAVKKGTKVIYAIYAMGRMEAIWGKDCREFKPERWLRDGRYTSE--SAYKFTAFNGGPRLCLGKDFAYYQMKYAAASIIYRYRVKVVKGHPVSPKLALTMYMK 659
            E + ++ Y+   + E LR+YPSVP+  ++V+ED    +G  +  GT +  +   +GR E ++ +    FKPER+  D   T+E  + Y +  F+ GPR C+G+ FA  ++K   A+++  Y V  V      P L   + ++
Sbjct:  361 ELLNQLHYVDLCVKETLRMYPSVPLLGRKVLEDCEI-NGKLIPAGTNIGISPLYLGRREELFSEP-NSFKPERF--DVVTTAEKLNPYAYIPFSAGPRNCIGQKFAMLEIKAIVANVLRHYEVDFVGDSSEPPVLIAELILR 498          
BLAST of CN188880 vs. ExPASy Swiss-Prot
Match: CP3AR_ONCMY (Cytochrome P450 3A27 OS=Oncorhynchus mykiss GN=cyp3a27 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.324e-11
Identity = 43/130 (33.08%), Postives = 64/130 (49.23%), Query Frame = -3
Query:  291 NSLVFKPEEIKKMDYLQAALSEALRLYPSVPVDHKEVVEDDVFPDGTAVKKGTKVIYAIYAMGRMEAIWGKDCREFKPERWLRDGRYTSESAYKFTAFNGGPRLCLGKDFAYYQMKYAAASIIYRYRVKV 680
            N    + E + +MDYL   L+E+LRLYP  P   + V +  V  +G  + K   V+   + + R   IW  D  EFKPER+ ++ +  S   Y +  F  GPR C+G  FA   +K A   I+  +   V
Sbjct:  346 NKAPIQYEALMQMDYLDCVLNESLRLYPIAP-RLERVAKKTVEINGIVIPKDCIVLVPTWTLHRDPEIW-SDPEEFKPERFSKENK-ESIDPYTYMPFGAGPRNCIGMRFALIMIKLAMVEILQSFTFSV 472          
BLAST of CN188880 vs. ExPASy Swiss-Prot
Match: C71C3_MAIZE (Cytochrome P450 71C3 OS=Zea mays GN=CYP71C3 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.324e-11
Identity = 39/127 (30.71%), Postives = 68/127 (53.54%), Query Frame = -3
Query:  303 VFKPEEIKKMDYLQAALSEALRLYPSVPVDHKEVVEDDVFPDGTAVKKGTKVIYAIYAMGRMEAIWGKDCREFKPERWLRDGRYTSES----AYKFTAFNGGPRLCLGKDFAYYQMKYAAASIIYRY 671
            + + +++  + YL+A++ EALRL+P  P+        D   DG  +    +V+   +A+GR  A+W K   EF PER++RDG   S S     +++  F  G R+C G +F    M+   A+++Y +
Sbjct:  371 MIREDDLSSLPYLKASMKEALRLHPPGPLLLPHYSTADCQIDGYHIPANPRVLVNGWAIGRDPAVWEKP-EEFMPERFMRDGWDKSNSYSGQDFRYLPFGSGRRICPGANFGLATMEIMLANLMYHF 496          
BLAST of CN188880 vs. ExPASy Swiss-Prot
Match: CP4F4_RAT (Cytochrome P450 4F4 OS=Rattus norvegicus GN=Cyp4f4 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.035e-11
Identity = 39/121 (32.23%), Postives = 62/121 (51.24%), Query Frame = -3
Query:  297 EEIKKMDYLQAALSEALRLYPSVPVDHKEVVEDDVFPDGTAVKKGTKVIYAIYAMGRMEAIWGKDCREFKPERWLRDGRYTSESAYKFTAFNGGPRLCLGKDFAYYQMKYAAASIIYRYRV 659
            +++ ++ +L   + E+LRL+P V V  +   +D V PDG  + KG   I  I+A      +W  D   + P R+  +      S   F  F+ GPR C+G+ FA  +MK A A  + R+RV
Sbjct:  373 DDLAQLPFLTMCIKESLRLHPPVTVISRRCTQDIVLPDGRVIPKGVICIINIFATHHNPTVW-PDPEVYDPFRFDPE-NIKDRSPLAFIPFSAGPRNCIGQTFAMNEMKVALALTLLRFRV 491          
BLAST of CN188880 vs. ExPASy Swiss-Prot
Match: CP4E3_DROME (Cytochrome P450 4e3 OS=Drosophila melanogaster GN=Cyp4e3 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.035e-11
Identity = 48/158 (30.38%), Postives = 80/158 (50.63%), Query Frame = -3
Query:  186 EEIKKMDYLQAALSEALRLYPSVPVDHKEVVEDDVFPDGTAVKKGTKVIYAIYAMGRMEAIWGKDCREFKPERWLRDGRYTSESAYKFTAFNGGPRLCLGKDFAYYQMKYAAASIIYRYRVKVVKGHPVSPKLALTMYMKHGLKVNLCKRDESELQKY 659
            +EI KM YL   + EA R+YPSVP   +   + D   +G+ V KGT +  A+  +G  + I+ KD   F+PER+  +      + +++  F+ GPR C+G+ FA  ++K   + ++  + V       VS    L  Y+  GL  +   + E+   KY
Sbjct:  352 QEIAKMKYLDLFIKEAQRVYPSVPFIGR-YCDKDYDINGSIVPKGTTLNLALILLGYNDRIF-KDPHHFRPERFEEE----KPAPFEYLPFSAGPRNCIGQKFALLELKTVISKVVRSFEVLPAVDELVSTDGRLNTYL--GLAPDEKLKREAGRHKY 501          
BLAST of CN188880 vs. ExPASy Swiss-Prot
Match: CP4E1_DROME (Probable cytochrome P450 4e1 OS=Drosophila melanogaster GN=Cyp4e1 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.035e-11
Identity = 41/121 (33.88%), Postives = 65/121 (53.72%), Query Frame = -3
Query:  297 EEIKKMDYLQAALSEALRLYPSVPVDHKEVVEDDVFPDGTAVKKGTKVIYAIYAMGRMEAIWGKDCREFKPERWLRDGRYTSESAYKFTAFNGGPRLCLGKDFAYYQMKYAAASIIYRYRV 659
            +EI  M +L   + EA RLYPSVP   +   E D   DG  V KGT +   +  +G  + ++ KD  +F+PER+ R+        +++  F+ GPR C+G+ FA  ++K   + II  + V
Sbjct:  353 QEISTMKHLDLFIKEAQRLYPSVPFIGR-FTEKDYVIDGDIVPKGTTLNLGLLMLGYNDRVF-KDPHKFQPERFDRE----KPGPFEYVPFSAGPRNCIGQKFALLEIKTVVSKIIRNFEV 467          
The following BLAST results are available for this feature:
BLAST of CN188880 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 124
Match NameE-valueIdentityDescription
CP4V3_RAT2.324e-1129.03Cytochrome P450 4V3 OS=Rattus norvegicus GN=Cyp4v3... [more]
CP4V2_HUMAN2.324e-1129.68Cytochrome P450 4V2 OS=Homo sapiens GN=CYP4V2 PE=1... [more]
CP4FN_HUMAN2.324e-1126.57Cytochrome P450 4F22 OS=Homo sapiens GN=CYP4F22 PE... [more]
CP4D1_DROSI2.324e-1130.28Cytochrome P450 4d1 OS=Drosophila simulans GN=Cyp4... [more]
CP4D1_DROME2.324e-1130.28Cytochrome P450 4d1 OS=Drosophila melanogaster GN=... [more]
CP3AR_ONCMY2.324e-1133.08Cytochrome P450 3A27 OS=Oncorhynchus mykiss GN=cyp... [more]
C71C3_MAIZE2.324e-1130.71Cytochrome P450 71C3 OS=Zea mays GN=CYP71C3 PE=2 S... [more]
CP4F4_RAT3.035e-1132.23Cytochrome P450 4F4 OS=Rattus norvegicus GN=Cyp4f4... [more]
CP4E3_DROME3.035e-1130.38Cytochrome P450 4e3 OS=Drosophila melanogaster GN=... [more]
CP4E1_DROME3.035e-1133.88Probable cytochrome P450 4e1 OS=Drosophila melanog... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0006P06_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0006P06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188880 ID=CN188880; Name=CN188880; organism=Citrus sinensis; type=EST; length=724bp
TTTTTTTTTTTTTTTTTATTAAATACAACCCTTTATATTCCCATTTAAAT
TATGTTTCAATCAATTCCATGTATTTCTAACACATATATATTGCAATACC
AATAATAATAATATGGCTAAAAATTATGAAAAGCAAACATATTTTATTGA
CACAAAGTGAGCTCTCAATTTATCATTCACTTGAAGTATTTTTGCAGCTC
AGACTCATCTCGCTTGCATAGGTTCACCTTCAAGCCATGCTTCATGTACA
TTGTCAACGCAAGCTTTGGTGACACCGGATGACCCTTCACCACCTTAACA
CGGTAGCGGTAAATGATGGAGGCGGCAGCGTATTTCATCTGATAGTAGGC
GAAATCTTTGCCGAGGCAGAGCCTGGGGCCACCGTTGAAGGCAGTGAACT
TGTAGGCTGATTCACTCGTATAACGGCCGTCTCTTAGCCATCTTTCTGGC
TTGAATTCTCTACAATCCTTTCCCCATATTGCCTCCATTCTTCCCATTGC
ATAAATTGCATATATCACTTTTGTTCCCTTCTTTACAGCTGTCCCATCTG
GAAATACATCGTCTTCAACCACCTCTTTGTGATCAACAGGCACAGAGGGA
TACAACCTCAAAGCCTCTGATAATGCAGCTTGCAAATAATCCATTTTTTT
AATCTCCTCAGGCTTAAACACCAATGAATTACTGCTACTCTCCTTCATTT
TCCCGTCTTCTCTTTCAGCAATTA
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