CN188880

Overview
NameCN188880
Unique NameCN188880
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length724
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN188880 vs. ExPASy Swiss-Prot
Match: CP3A6_RABIT (Cytochrome P450 3A6 OS=Oryctolagus cuniculus GN=CYP3A6 PE=2 SV=2)

HSP 1 Score: 68.9366 bits (167), Expect = 3.035e-11
Identity = 45/133 (33.83%), Postives = 70/133 (52.63%), Query Frame = -3
Query:  261 EEIKKMDYLQAALSEALRLYPSVPVDHKEVVEDDVFPDGTAVKKGTKVIYAIYAMGRMEAIWGKDCREFKPERWLRDGRYTSESAYKFTAFNGGPRLCLGKDFAYYQMKYAAASIIYRYRVKVVKGHPVSPKL 659
            + + KM+YL   ++E LRLYP +    + V + DV  +GT + KGT V+   YA+ R    W +   EF+PER+ +  +  + + Y +  F  GPR CLG  FA   +K A   ++  +  K+ K   V  KL
Sbjct:  346 DTLVKMEYLDMVVNETLRLYP-IAGRLERVCKKDVDINGTFIPKGTIVMMPTYALHRDPQHWTEP-DEFRPERFSKKNK-DNINPYIYHPFGAGPRNCLGMRFALMNIKLALVRLMQNFSFKLCKETQVPLKL 475          
BLAST of CN188880 vs. ExPASy Swiss-Prot
Match: C71AP_ARATH (Cytochrome P450 71A25 OS=Arabidopsis thaliana GN=CYP71A25 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.964e-11
Identity = 39/123 (31.71%), Postives = 62/123 (50.41%), Query Frame = -3
Query:  291 EEIKKMDYLQAALSEALRLYPSVPVDHKEVVEDDVFPDGTAVKKGTKVIYAIYAMGRMEAIWGKDCREFKPERWLRDGRYTSESAYKFTAFNGGPRLCLGKDFAYYQMKYAAASIIYRYRVKV 659
            ++I+ M YL+A + EALRL+P  P+       +DV      +  GT+V+   +A+GR  A WG D  EFKPER L          ++   F  G R+C    FA    +   A++++ +  K+
Sbjct:  334 DDIQGMKYLKAVIKEALRLHPPFPMMAPHESTEDVKLRDYHIPAGTQVMMNAWAIGREVATWGPDAEEFKPERHLDTSVDFRGQNFELLPFGAGRRICPAVSFAVVLNEVVLANLVHGFDWKL 456          
BLAST of CN188880 vs. ExPASy Swiss-Prot
Match: CYPE_BACSU (Probable bifunctional P-450/NADPH-P450 reductase 2 OS=Bacillus subtilis GN=cypE PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.178e-11
Identity = 41/137 (29.93%), Postives = 65/137 (47.45%), Query Frame = -3
Query:  249 EEIKKMDYLQAALSEALRLYPSVPVDHKEVVEDDVFPDGTAVKKGTKVIYAIYAMGRMEAIWGKDCREFKPERWLRDGRYTSESAYKFTAFNGGPRLCLGKDFAYYQMKYAAASIIYRYRVKVVKGHPVSPKLALTM 659
            ++I+++ Y++  L+E LRLYP+ P       ED V      + KG  V   I  + R +  WG D  +F+PER+  D       AYK   F  G R C+G  FA  +       ++  + +    G+ +  K ALT+
Sbjct:  309 KQIQQLKYIRMVLNETLRLYPTAPAFSLYAKEDTVLGGEYPISKGQPVTVLIPKLHRDQNAWGPDAEDFRPERF-EDPSSIPHHAYK--PFGNGQRACIGMQFALQEATMVLGLVLKHFELINHTGYELKIKEALTI 442          
BLAST of CN188880 vs. ExPASy Swiss-Prot
Match: CP3AD_MOUSE (Cytochrome P450 3A13 OS=Mus musculus GN=Cyp3a13 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.178e-11
Identity = 45/155 (29.03%), Postives = 80/155 (51.61%), Query Frame = -3
Query:  201 EEIKKMDYLQAALSEALRLYPSVPVDHKEVVEDDVFPDGTAVKKGTKVIYAIYAMGRMEAIWGKDCREFKPERWLRDGRYTSESAYKFTAFNGGPRLCLGKDFAYYQMKYAAASIIYRYRVKVVKGHPVSPKLAL--TMYMKHGLKVNLCKRDES 659
            + + +M+YL   ++E LRLYP +    + V + DV  +G  + KGT V+   +A+ +    W +   EF+PER+ +  +  S + Y +  F  GPR C+G  FA   MK A   ++  + V+  K   +  KL+    +  ++ L + +  RDE+
Sbjct:  348 DTLLQMEYLDMVVNETLRLYP-IAGRLERVCKTDVEINGLFIPKGTVVMIPTFALHKDPKYWPEP-EEFRPERFSKKNQ-DSINPYMYLPFGSGPRNCIGMRFALINMKVALVRVLQNFTVQPCKETEIPLKLSKQGLLQPENPLLLKVVSRDET 499          
BLAST of CN188880 vs. ExPASy Swiss-Prot
Match: CP3AB_MOUSE (Cytochrome P450 3A11 OS=Mus musculus GN=Cyp3a11 PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.178e-11
Identity = 46/155 (29.68%), Postives = 76/155 (49.03%), Query Frame = -3
Query:  258 IAEREDGKMKESSSNSLVFKPEEIKKMDYLQAALSEALRLYPSVPVDHKEVVEDDVFPDGTAVKKGTKVIYAIYAMGRMEAIWGKDCREFKPERWLRDGRYTSESAYKFTAFNGGPRLCLGKDFAYYQMKYAAASIIYRYRVKVVKGHPVSPKLA 722
            I ++   ++ E+  N      + + +M+YL   L+E LRLYP +    + V + DV  +G  + KG+ V+   YA+      W +   EF+PER+ ++ +  S   Y +  F  GPR CLG  FA   MK A   I+  +  +  K   +  KL+
Sbjct:  328 IQKKLQDEIDEALPNKAPPTYDTVMEMEYLDMVLNETLRLYP-IANRLERVCKKDVELNGVYIPKGSTVMIPSYALHHDPQHWSEP-EEFQPERFSKENK-GSIDPYVYLPFGNGPRNCLGMRFALMNMKLALTKIMQNFSFQPCKETQIPLKLS 479          
BLAST of CN188880 vs. ExPASy Swiss-Prot
Match: C13A6_CAEEL (Putative cytochrome P450 CYP13A6 OS=Caenorhabditis elegans GN=cyp-13A6 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.178e-11
Identity = 36/133 (27.07%), Postives = 56/133 (42.11%), Query Frame = -3
Query:  261 EEIKKMDYLQAALSEALRLYPSVPVDHKEVVEDDVFPDGTAVKKGTKVIYAIYAMGRMEAIWGKDCREFKPERWLRDGRYTSESAYKFTAFNGGPRLCLGKDFAYYQMKYAAASIIYRYRVKVVKGHPVSPKL 659
            + + K+ YL+  + E LRLYP     +      +   +G    +G  +    + +     IWG+D  +FKPERW        E    +  F  GPR C+G   A  + K   A I+  Y  +  K   +  KL
Sbjct:  366 DHLSKLKYLECVMKETLRLYPLGTTANTRKCMRETTINGVNFDEGMNIQVDTWTLHHNPRIWGEDVEDFKPERWENGACEHLEHNGSYIPFGSGPRQCIGMRLAQMEQKILLAQILKEYSFRTTKNTQIPVKL 498          
BLAST of CN188880 vs. ExPASy Swiss-Prot
Match: CP6A2_DROME (Cytochrome P450 6a2 OS=Drosophila melanogaster GN=Cyp6a2 PE=2 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 6.762e-11
Identity = 44/125 (35.20%), Postives = 64/125 (51.20%), Query Frame = -3
Query:  291 EEIKKMDYLQAALSEALRLYPSVPVDHKEVVEDDVFP--DGTAVKKGTKVIYAIYAMGRMEAIWGKDCREFKPERWLRDGRYTSESAYKFTAFNGGPRLCLGKDFAYYQMKYAAASIIYRYRVKV 659
            E IK M YL   +SE LRLY  VP   ++ + D V P  +   ++KGT+VI    A  R E ++      F PER+  + +  +  + ++  F  GPR C+G  F   Q +   A II R+RV V
Sbjct:  354 ESIKAMTYLNQVISETLRLYTLVPHLERKALNDYVVPGHEKLVIEKGTQVIIPACAYHRDEDLYPNP-ETFDPERFSPE-KVAARESVEWLPFGDGPRNCIGMRFGQMQARIGLAQIISRFRVSV 476          
BLAST of CN188880 vs. ExPASy Swiss-Prot
Match: CP4P3_DROME (Probable cytochrome P450 4p3 OS=Drosophila melanogaster GN=Cyp4p3 PE=2 SV=3)

HSP 1 Score: 67.781 bits (164), Expect = 6.762e-11
Identity = 37/150 (24.67%), Postives = 77/150 (51.33%), Query Frame = -3
Query:  210 EIKKMDYLQAALSEALRLYPSVPVDHKEVVEDDVFPDGTAVKKGTKVIYAIYAMGRMEAIWGKDCREFKPERWLRDGRYTSESAYKFTAFNGGPRLCLGKDFAYYQMKYAAASIIYRYRV-KVVKGHPVSPKLALTMYMKHGLKVNLCKR 656
            ++ K+  L+  + E +RL+PSVP   +E   +    +G  + KG+++   ++ + R    W     EF+PER+L +    +   Y +  F+ G R C+G+ FA  +MK    +++ ++++   +    +  +  LT+  K+ + V L +R
Sbjct:  367 QLNKLKNLEYFIKETMRLFPSVPAMGRETTRETELSNGLILPKGSQIFVHVFDIHRNPEYWDSP-EEFRPERFLPENS-QNRHTYAYIPFSAGQRNCIGQKFAMQEMKTLMVALLKQFQILPEIDPKTIVFQTGLTLRTKNQIHVKLVRR 514          
BLAST of CN188880 vs. ExPASy Swiss-Prot
Match: CP3AT_PIG (Cytochrome P450 3A29 OS=Sus scrofa GN=CYP3A29 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.762e-11
Identity = 41/133 (30.83%), Postives = 67/133 (50.38%), Query Frame = -3
Query:  261 EEIKKMDYLQAALSEALRLYPSVPVDHKEVVEDDVFPDGTAVKKGTKVIYAIYAMGRMEAIWGKDCREFKPERWLRDGRYTSESAYKFTAFNGGPRLCLGKDFAYYQMKYAAASIIYRYRVKVVKGHPVSPKL 659
            + + +M+YL   ++E LRLYP +    +   + DV   G  V KGT V+  ++ + R   +W +   EF+PER+ +  + T  + Y +  F  GPR C+G  FA   MK A   ++  +  K  K   +  KL
Sbjct:  348 DALAQMEYLDMVVNETLRLYP-IAARLERACKKDVEIHGVFVPKGTVVVVPVFVLHRDPDLWPEP-EEFRPERFSKKHKDTI-NPYTYLPFGTGPRNCIGMRFALMNMKLALVRVLQNFSFKPCKETQIPLKL 477          
BLAST of CN188880 vs. ExPASy Swiss-Prot
Match: CP3AI_RAT (Cytochrome P450 3A18 OS=Rattus norvegicus GN=Cyp3a18 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.762e-11
Identity = 39/122 (31.97%), Postives = 63/122 (51.64%), Query Frame = -3
Query:  294 EEIKKMDYLQAALSEALRLYPSVPVDHKEVVEDDVFPDGTAVKKGTKVIYAIYAMGRMEAIWGKDCREFKPERWLRDGRYTSESAYKFTAFNGGPRLCLGKDFAYYQMKYAAASIIYRYRVK 659
            + + +M+YL   ++E+LRLYP +      V + DV  +G  + KGT V   IY + R    W  +  EF PER+ ++ +  S   Y +  F  GPR C+G  FA   MK A   ++  + ++
Sbjct:  348 DALMEMEYLDMVVNESLRLYP-IATRLDRVSKKDVEINGVFIPKGTVVTIPIYPLHRNPEYW-LEPEEFNPERFSKENK-GSIDPYVYLPFGNGPRNCIGMRFALISMKLAVIGVLQNFNIQ 466          
The following BLAST results are available for this feature:
BLAST of CN188880 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 124
Match NameE-valueIdentityDescription
CP3A6_RABIT3.035e-1133.83Cytochrome P450 3A6 OS=Oryctolagus cuniculus GN=CY... [more]
C71AP_ARATH3.964e-1131.71Cytochrome P450 71A25 OS=Arabidopsis thaliana GN=C... [more]
CYPE_BACSU5.178e-1129.93Probable bifunctional P-450/NADPH-P450 reductase 2... [more]
CP3AD_MOUSE5.178e-1129.03Cytochrome P450 3A13 OS=Mus musculus GN=Cyp3a13 PE... [more]
CP3AB_MOUSE5.178e-1129.68Cytochrome P450 3A11 OS=Mus musculus GN=Cyp3a11 PE... [more]
C13A6_CAEEL5.178e-1127.07Putative cytochrome P450 CYP13A6 OS=Caenorhabditis... [more]
CP6A2_DROME6.762e-1135.20Cytochrome P450 6a2 OS=Drosophila melanogaster GN=... [more]
CP4P3_DROME6.762e-1124.67Probable cytochrome P450 4p3 OS=Drosophila melanog... [more]
CP3AT_PIG6.762e-1130.83Cytochrome P450 3A29 OS=Sus scrofa GN=CYP3A29 PE=2... [more]
CP3AI_RAT6.762e-1131.97Cytochrome P450 3A18 OS=Rattus norvegicus GN=Cyp3a... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0006P06_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0006P06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188880 ID=CN188880; Name=CN188880; organism=Citrus sinensis; type=EST; length=724bp
TTTTTTTTTTTTTTTTTATTAAATACAACCCTTTATATTCCCATTTAAAT
TATGTTTCAATCAATTCCATGTATTTCTAACACATATATATTGCAATACC
AATAATAATAATATGGCTAAAAATTATGAAAAGCAAACATATTTTATTGA
CACAAAGTGAGCTCTCAATTTATCATTCACTTGAAGTATTTTTGCAGCTC
AGACTCATCTCGCTTGCATAGGTTCACCTTCAAGCCATGCTTCATGTACA
TTGTCAACGCAAGCTTTGGTGACACCGGATGACCCTTCACCACCTTAACA
CGGTAGCGGTAAATGATGGAGGCGGCAGCGTATTTCATCTGATAGTAGGC
GAAATCTTTGCCGAGGCAGAGCCTGGGGCCACCGTTGAAGGCAGTGAACT
TGTAGGCTGATTCACTCGTATAACGGCCGTCTCTTAGCCATCTTTCTGGC
TTGAATTCTCTACAATCCTTTCCCCATATTGCCTCCATTCTTCCCATTGC
ATAAATTGCATATATCACTTTTGTTCCCTTCTTTACAGCTGTCCCATCTG
GAAATACATCGTCTTCAACCACCTCTTTGTGATCAACAGGCACAGAGGGA
TACAACCTCAAAGCCTCTGATAATGCAGCTTGCAAATAATCCATTTTTTT
AATCTCCTCAGGCTTAAACACCAATGAATTACTGCTACTCTCCTTCATTT
TCCCGTCTTCTCTTTCAGCAATTA
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