CN188880

Overview
NameCN188880
Unique NameCN188880
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length724
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CN188880_ssr101 microsatellite CN188880_ssr101:101..112. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of CN188880 vs. ExPASy Swiss-Prot
Match: CP4X1_RAT (Cytochrome P450 4X1 OS=Rattus norvegicus GN=Cyp4x1 PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.456e-13
Identity = 46/154 (29.87%), Postives = 79/154 (51.30%), Query Frame = -3
Query:  204 EEIKKMDYLQAALSEALRLYPSVPVDHKEVVEDDVFPDGTAVKKGTKVIYAIYAMGRMEAIWGKDCREFKPERWLRDGRYTSESAYK--FTAFNGGPRLCLGKDFAYYQMKYAAASIIYRYRVKVVKGHPVSPKLALTMYMKHGLKVNLCKRDE 659
            E++ ++ Y    + E LRL P +P   +E+ +    PDG ++  G  V+ +I+ +    A+W KD + F P R+ ++    SE  +   F  F+ GPR C+G+ FA  ++K A A  + R+RV      P +      +  KHG+ ++L K  E
Sbjct:  357 EQLDEIPYTTMCIKETLRLIPPIPSISRELSKPLTLPDGHSLPAGMTVVLSIWGLHHNPAVW-KDPKVFDPLRFTKEN---SEQRHPCAFLPFSSGPRNCIGQQFAMLELKVAIALTLLRFRVAADLTRPPAFSSHTVLRPKHGIYLHLKKLPE 506          
BLAST of CN188880 vs. ExPASy Swiss-Prot
Match: CP4CA_MOUSE (Cytochrome P450 4A12A OS=Mus musculus GN=Cyp4a12a PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.456e-13
Identity = 44/148 (29.73%), Postives = 74/148 (50.00%), Query Frame = -3
Query:  213 EIKKMDYLQAALSEALRLYPSVPVDHKEVVEDDVFPDGTAVKKGTKVIYAIYAMGRMEAIWGKDCREFKPERWLRDGRYTSESAYKFTAFNGGPRLCLGKDFAYYQMKYAAASIIYRYRVKVVKGHPVSPKLALTMYMKHGLKVNLCK 656
            ++ KM Y    + EALR+YP VP   +E+     FPDG ++ KG  V+ + Y +     +W  +   F P R+      +S  ++ F  F+GG R C+GK FA  ++K A A  + R+ +         P   + +  K+G+ ++L K
Sbjct:  363 DLDKMPYTTMCIKEALRIYPPVPSVSRELSSPVTFPDGRSLPKGIHVMLSFYGLHHNPTVW-PNPEVFDPSRFAPG---SSRHSHSFLPFSGGARNCIGKQFAMNELKVAVALTLLRFELLPDPTRVPIPIPRIVLKSKNGIHLHLKK 506          
BLAST of CN188880 vs. ExPASy Swiss-Prot
Match: CP4AL_PIG (Taurochenodeoxycholic 6 alpha-hydroxylase OS=Sus scrofa GN=CYP4A21 PE=1 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.483e-13
Identity = 44/149 (29.53%), Postives = 74/149 (49.66%), Query Frame = -3
Query:  213 EEIKKMDYLQAALSEALRLYPSVPVDHKEVVEDDVFPDGTAVKKGTKVIYAIYAMGRMEAIWGKDCREFKPERWLRDGRYTSESAYKFTAFNGGPRLCLGKDFAYYQMKYAAASIIYRYRVKVVKGHPVSPKLALTMYMKHGLKVNLCK 659
            + + +M Y    + EALRLYP VP   +E+ +   FPDG ++  G  +  +IY +     +W  +  EF P R+      ++  ++ F  F+GG R C+GK FA  +MK   A  + R+ +         P   + +  K+G+ +NL K
Sbjct:  358 DHLDQMPYTTMCIKEALRLYPPVPSVGRELSKPITFPDGRSLPAGIILSLSIYGLHHNPQVW-PNPEEFDPSRFAPG---SARHSHAFMPFSGGSRNCIGKQFAMNEMKVVVALTLLRFELAPDPSRIPVPIQGIVLKSKNGIHLNLRK 502          
BLAST of CN188880 vs. ExPASy Swiss-Prot
Match: C97B2_SOYBN (Cytochrome P450 97B2 OS=Glycine max GN=CYP97B2 PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.483e-13
Identity = 54/180 (30.00%), Postives = 87/180 (48.33%), Query Frame = -3
Query:  210 EEIKKMDYLQAALSEALRLYPSVPVDHKEVVEDDVFP-------DGTAVKKGTKVIYAIYAMGRMEAIWGKDCREFKPERWLRDGR-------------------YTSE--SAYKFTAFNGGPRLCLGKDFAYYQMKYAAASIIYRYRVKVVKGHPVSPKL--ALTMYMKHGLKVNLCKR 659
            E +K++ Y++  + EALRLYP  P+  +  ++ DV P       DG A+  GT V  ++Y + R    W +   +F+PER+L   +                   Y +E  S + F  F GGPR C+G  FA  +   A   ++  + V+ +KG P S +L    T++ K+G+   L KR
Sbjct:  395 ESLKELQYIRLIVVEALRLYPQPPLLIRRSLKSDVLPGGHKGEKDGYAIPAGTDVFISVYNLHRSPYFWDRP-DDFEPERFLVQNKNEEIEGWAGLDPSRSPGALYPNEVISDFAFLPFGGGPRKCVGDQFALMESTVALTMLLQNFDVE-LKGTPESVELVTGATIHTKNGMWCRLKKR 572          
BLAST of CN188880 vs. ExPASy Swiss-Prot
Match: C71AQ_ARATH (Cytochrome P450 71A26 OS=Arabidopsis thaliana GN=CYP71A26 PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.483e-13
Identity = 41/119 (34.45%), Postives = 62/119 (52.10%), Query Frame = -3
Query:  303 EEIKKMDYLQAALSEALRLYPSVPVDHKEVVEDDVFPDGTAVKKGTKVIYAIYAMGRMEAIWGKDCREFKPERWLRDGRYTSESAYKFTAFNGGPRLCLGKDFAYYQMKYAAASIIYRY 659
            EEI+ M YL+A + EALRL+P +P+        DV      +  GT+V+   +A+GR  A WG D  EF+PER L         A++   F  G R+C    FA    +   A++++R+
Sbjct:  334 EEIQNMSYLKAVIKEALRLHPPLPLMVPHESTQDVRLGDHHIPAGTQVLINAWAIGREAATWGPDVEEFRPERHLDSSVDYRGQAFELIPFGSGRRICPAISFAVVLNEVVLANLVHRF 452          
BLAST of CN188880 vs. ExPASy Swiss-Prot
Match: CP52G_CANTR (Cytochrome P450 52A7 OS=Candida tropicalis GN=CYP52A7 PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.243e-13
Identity = 46/136 (33.82%), Postives = 71/136 (52.21%), Query Frame = -3
Query:  330 EREDGKMKESSSNSLVFKPEEIKKMDYLQAALSEALRLYPSVPVDHKEVVEDDVF-----PDGTAVKKGTKVIYAIYAMGRM--EAIWGKDCREFKPERWLRDGRYTSESAYKFTAFNGGPRLCLGKDFAYYQMKY 716
            E + G  +ES    + F  E +K+ +YL+A ++E LRL+PSVP + +  ++D        PDG       K+  +I+  G       +GKD + F+PERW      T    + +  FNGGPR+CLG+ FA  +  Y
Sbjct:  337 ESQFGLGEESRIEEITF--ESLKRCEYLKAVMNETLRLHPSVPRNARFALKDTTLPRGGGPDGKDPILVRKMSCSIFISGTQIDPKHYGKDAKLFRPERWFESS--TRNLGWAYLPFNGGPRICLGQQFALTEAGY 468          
BLAST of CN188880 vs. ExPASy Swiss-Prot
Match: CP4AA_MOUSE (Cytochrome P450 4A10 OS=Mus musculus GN=Cyp4a10 PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.243e-13
Identity = 44/149 (29.53%), Postives = 74/149 (49.66%), Query Frame = -3
Query:  213 EEIKKMDYLQAALSEALRLYPSVPVDHKEVVEDDVFPDGTAVKKGTKVIYAIYAMGRMEAIWGKDCREFKPERWLRDGRYTSESAYKFTAFNGGPRLCLGKDFAYYQMKYAAASIIYRYRVKVVKGHPVSPKLALTMYMKHGLKVNLCK 659
            + + ++ Y    + EALRLYP VP   +E+     FPDG ++ KG +V  +IY +     +W  +   F P R+  D   +   ++ F  F+GG R C+GK FA  ++K   A  + R+ +         P   L +  K+G+ ++L K
Sbjct:  363 DHLDQIPYTTMCIKEALRLYPPVPGIVRELSTSVTFPDGRSLPKGVQVTLSIYGLHHNPKVW-PNPEVFDPSRFAPD---SPRHSHSFLPFSGGARNCIGKQFAMSELKVIVALTLLRFELLPDPTRVPMPLARLVLKSKNGIYLHLKK 507          
BLAST of CN188880 vs. ExPASy Swiss-Prot
Match: CP4A5_RABIT (Cytochrome P450 4A5 OS=Oryctolagus cuniculus GN=CYP4A5 PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.243e-13
Identity = 47/152 (30.92%), Postives = 73/152 (48.03%), Query Frame = -3
Query:  213 EEIKKMDYLQAALSEALRLYPSVPVDHKEVVEDDVFPDGTAVKKGTKVIYAIYAMGRMEAIWGKDCREFKPERWLRDGRYTSESA---YKFTAFNGGPRLCLGKDFAYYQMKYAAASIIYRYRVKVVKGHPVSPKLALTMYMKHGLKVNLCK 659
            E + +M Y    + EA+RLYP VP   +++     FPDG ++ KG  V  +IY +     +W  +   F P      GR+T  SA   + F  F+GG R C+GK FA  ++K A A  + R+ +         P   L +   +G+ + L K
Sbjct:  365 EHLDQMPYTTMCIKEAMRLYPPVPAISRDLSSPVTFPDGRSLPKGFTVTLSIYGLHHNPNVW-PNPEVFDP------GRFTPGSARHSHAFLPFSGGARNCIGKQFAMNELKVAVALTLVRFELLPDPTRIPKPTARLVLKSNNGIHLRLRK 509          
BLAST of CN188880 vs. ExPASy Swiss-Prot
Match: C71AN_ARATH (Cytochrome P450 71A23 OS=Arabidopsis thaliana GN=CYP71A23 PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.236e-13
Identity = 40/119 (33.61%), Postives = 63/119 (52.94%), Query Frame = -3
Query:  303 EEIKKMDYLQAALSEALRLYPSVPVDHKEVVEDDVFPDGTAVKKGTKVIYAIYAMGRMEAIWGKDCREFKPERWLRDGRYTSESAYKFTAFNGGPRLCLGKDFAYYQMKYAAASIIYRY 659
            ++I+ M+YL+A + EALRL+P VP+        DV      +  GT+VI  ++A+GR  A WG D  EF+PER L          ++   F  G R+C G  FA    +   A++++ +
Sbjct:  332 DDIQGMEYLKAVVKEALRLHPPVPLMVPHQSTQDVRLRDNHIPAGTQVIVNLWAVGREAATWGPDANEFRPERHLESPSDFRGQDFELIPFGAGRRMCPGISFAVVLNEVVLANLVHGF 450          
BLAST of CN188880 vs. ExPASy Swiss-Prot
Match: CP6D4_DROME (Probable cytochrome P450 6d4 OS=Drosophila melanogaster GN=Cyp6d4 PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 5.532e-13
Identity = 42/152 (27.63%), Postives = 77/152 (50.66%), Query Frame = -3
Query:  210 EEIKKMDYLQAALSEALRLYPSVPVDHKEVVEDDVFPD-GTAVKKGTKVIYAIYAMGRMEAIWGKDCREFKPERWLRDGRYTSESAYKFTAFNGGPRLCLGKDFAYYQMKYAAASIIYRYRVKVVKGHPVS-PKLALTMYMKHGLKVNLCKR 659
            + + KM++L   + E +R YP +P+ ++E  +D   PD    + KGT V+ ++Y +   +A +  D   + PER+  + R  + +A  F  F  GPR+C+ +       K A   I+  + V+V+    +      + +  KHG++V L KR
Sbjct:  362 DSLNKMEFLDLCVQETIRKYPGLPILNRECTQDYTVPDTNHVIPKGTPVVISLYGI-HHDAEYFPDPETYDPERFSEESRNYNPTA--FMPFGEGPRICIAQRMGRINSKLAIIKILQNFNVEVMSRSEIEFENSGIALIPKHGVRVRLSKR 510          
The following BLAST results are available for this feature:
BLAST of CN188880 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 124
Match NameE-valueIdentityDescription
CP4X1_RAT1.456e-1329.87Cytochrome P450 4X1 OS=Rattus norvegicus GN=Cyp4x1... [more]
CP4CA_MOUSE1.456e-1329.73Cytochrome P450 4A12A OS=Mus musculus GN=Cyp4a12a ... [more]
CP4AL_PIG2.483e-1329.53Taurochenodeoxycholic 6 alpha-hydroxylase OS=Sus s... [more]
C97B2_SOYBN2.483e-1330.00Cytochrome P450 97B2 OS=Glycine max GN=CYP97B2 PE=... [more]
C71AQ_ARATH2.483e-1334.45Cytochrome P450 71A26 OS=Arabidopsis thaliana GN=C... [more]
CP52G_CANTR3.243e-1333.82Cytochrome P450 52A7 OS=Candida tropicalis GN=CYP5... [more]
CP4AA_MOUSE3.243e-1329.53Cytochrome P450 4A10 OS=Mus musculus GN=Cyp4a10 PE... [more]
CP4A5_RABIT3.243e-1330.92Cytochrome P450 4A5 OS=Oryctolagus cuniculus GN=CY... [more]
C71AN_ARATH4.236e-1333.61Cytochrome P450 71A23 OS=Arabidopsis thaliana GN=C... [more]
CP6D4_DROME5.532e-1327.63Probable cytochrome P450 6d4 OS=Drosophila melanog... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0006P06_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0006P06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188880 ID=CN188880; Name=CN188880; organism=Citrus sinensis; type=EST; length=724bp
TTTTTTTTTTTTTTTTTATTAAATACAACCCTTTATATTCCCATTTAAAT
TATGTTTCAATCAATTCCATGTATTTCTAACACATATATATTGCAATACC
AATAATAATAATATGGCTAAAAATTATGAAAAGCAAACATATTTTATTGA
CACAAAGTGAGCTCTCAATTTATCATTCACTTGAAGTATTTTTGCAGCTC
AGACTCATCTCGCTTGCATAGGTTCACCTTCAAGCCATGCTTCATGTACA
TTGTCAACGCAAGCTTTGGTGACACCGGATGACCCTTCACCACCTTAACA
CGGTAGCGGTAAATGATGGAGGCGGCAGCGTATTTCATCTGATAGTAGGC
GAAATCTTTGCCGAGGCAGAGCCTGGGGCCACCGTTGAAGGCAGTGAACT
TGTAGGCTGATTCACTCGTATAACGGCCGTCTCTTAGCCATCTTTCTGGC
TTGAATTCTCTACAATCCTTTCCCCATATTGCCTCCATTCTTCCCATTGC
ATAAATTGCATATATCACTTTTGTTCCCTTCTTTACAGCTGTCCCATCTG
GAAATACATCGTCTTCAACCACCTCTTTGTGATCAACAGGCACAGAGGGA
TACAACCTCAAAGCCTCTGATAATGCAGCTTGCAAATAATCCATTTTTTT
AATCTCCTCAGGCTTAAACACCAATGAATTACTGCTACTCTCCTTCATTT
TCCCGTCTTCTCTTTCAGCAATTA
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