CN188880

Overview
NameCN188880
Unique NameCN188880
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length724
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CN188880_ssr101 microsatellite CN188880_ssr101:101..112. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of CN188880 vs. ExPASy Swiss-Prot
Match: C76A1_SOLME (Cytochrome P450 76A1 (Fragment) OS=Solanum melongena GN=CYP76A1 PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.043e-11
Identity = 48/156 (30.77%), Postives = 78/156 (50.00%), Query Frame = -3
Query:  225 FKPEEIKKMDYLQAALSEALRLYPSVPV-DHKEVVEDDVFPDGTAVKKGTKVIYAIYAMGRMEAIWGKDCREFKPERWLRDGRYTSESAYKFTAFNGGPRLCLGKDFAYYQMKYAAASIIYRYRVKVVKGHPVSPK-------LALTMYMKHGLKV 668
            F+  +I  + Y+QA L E LRL+P +P+   ++ ++D  F  G  + KGT+V+   +A+GR    W     EFKPER+L          Y+   F  G R+C+G    +  M +   S+++ +  ++   H VSPK       + +T   K  LKV
Sbjct:  311 FEECDIDSLPYMQAVLKEQLRLHPPLPLLIPRKAIQDTKFM-GYDIPKGTQVLVNAWAIGRDPEYWDNPF-EFKPERFLESKVDVKGQNYELIPFGAGRRMCVGLPLGHRMMHFTFGSLLHEFDWEL--PHNVSPKSINMEESMGITARKKQPLKV 462          
BLAST of CN188880 vs. ExPASy Swiss-Prot
Match: C75A1_PINTA (Cytochrome P450 750A1 OS=Pinus taeda GN=CYP750A1 PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.043e-11
Identity = 47/150 (31.33%), Postives = 76/150 (50.67%), Query Frame = -3
Query:  276 EDGKMKESSSNSLVFKPEEIKKMDYLQAALSEALRLYPSVPVDHKEVVEDDVFPDGTAVKKGTKVIYAIYAMGRMEAIWGKDCREFKPERWLR---DGRYTS--ESAYKFTAFNGGPRLCLGKDFAYYQMKYAAASIIYRYRVKVVKGHP 710
            + G +KES   S+V          YL   + E LRLYPS+P+       + V   G  + K T VI  ++A+GR  ++WG D  EFKPER+++   +G   S  +S ++   F  G R C G   A   +++  A +++ +  + V+G P
Sbjct:  356 QQGTVKESDLASIV----------YLHCVVKETLRLYPSLPLALPHESLEAVTVGGYYIPKKTMVIMNLWAIGRDPSVWGADASEFKPERFMQMEENGIDLSGGQSDFRMLPFGAGRRTCPGSAMAILTVEFTLAQLLHTFDWR-VEGDP 494          
BLAST of CN188880 vs. ExPASy Swiss-Prot
Match: C516B_DICDI (Probable cytochrome P450 516B1 OS=Dictyostelium discoideum GN=cyp516b1 PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.043e-11
Identity = 39/138 (28.26%), Postives = 62/138 (44.93%), Query Frame = -3
Query:  273 KKMDYLQAALSEALRLYPSVPVDHKEVVEDDVFPDGTAVKKGTKVIYAIYAMGRMEAIWGKDCREFKPERWLRDGRYT------------SESAYKFTAFNGGPRLCLGKDFAYYQMKYAAASIIYRYRVKVVKGHPV 650
            K   YL A + E +R+  + P+    +  +D+   G  + KGT+V+ ++Y M   E  W KD   F PERWL     T            S  +  F  F  GPR+C+G   A  ++ Y A+ +   ++   V   P+
Sbjct:  333 KDTSYLNACIQETMRIRTAAPLALPRIASEDIKVGGYTIPKGTQVMMSVYGMASDERYW-KDPHIFNPERWLSSNHSTENGGGGGGVVGNSSQSEVFIPFGVGPRMCVGMGVAKDELYYCASQMFMNFKWSPVNDKPI 469          
BLAST of CN188880 vs. ExPASy Swiss-Prot
Match: CP4E2_DROME (Cytochrome P450 4e2 OS=Drosophila melanogaster GN=Cyp4e2 PE=1 SV=2)

HSP 1 Score: 70.0922 bits (170), Expect = 1.363e-11
Identity = 41/121 (33.88%), Postives = 64/121 (52.89%), Query Frame = -3
Query:  297 EEIKKMDYLQAALSEALRLYPSVPVDHKEVVEDDVFPDGTAVKKGTKVIYAIYAMGRMEAIWGKDCREFKPERWLRDGRYTSESAYKFTAFNGGPRLCLGKDFAYYQMKYAAASIIYRYRV 659
            +EI +M YL   + EA R+YPSVP   +   E D   DG  V KGT +   +  +G  E ++ KD  +F+PER+           +++  F+ GPR C+G+ FA  ++K   + II  + V
Sbjct:  353 QEISQMKYLDLFIKEAQRVYPSVPFIGR-FTEKDYVIDGDLVPKGTTLNLGLVMLGYNEKVF-KDPHKFRPERF----ELEKPGPFEYVPFSAGPRNCIGQKFALLEIKTVVSKIIRNFEV 467          
BLAST of CN188880 vs. ExPASy Swiss-Prot
Match: CCD1D_DROME (Probable cytochrome P450 12d1 distal, mitochondrial OS=Drosophila melanogaster GN=Cyp12d1-d PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.363e-11
Identity = 44/125 (35.20%), Postives = 63/125 (50.40%), Query Frame = -3
Query:  294 EEIKKMDYLQAALSEALRLYPSVPVDHKEVVEDDVFPDGTAVKKGTKVIYAIYAMGRMEAIWGKDCREFKPERWLRD---GRYTSESAYKFTAFNGGPRLCLGKDFAYYQMKYAAASIIYRYRVK 659
            E +K M YL+A + E LR YP+         ++DV   G  V KGT V+     + + EA +     EF PERWLRD   G+    S + F  F  GPR+C+GK     +M+   A +I  + V+
Sbjct:  369 ENMKDMPYLRAVIKETLRYYPN-GFGTMRTCQNDVILSGYRVPKGTTVLLGSNVLMK-EATYYPRPDEFLPERWLRDPETGKKMQVSPFTFLPFGFGPRMCIGKRVVDLEMETTVAKLIRNFHVE 491          
BLAST of CN188880 vs. ExPASy Swiss-Prot
Match: C89A2_ARATH (Cytochrome P450 89A2 OS=Arabidopsis thaliana GN=CYP89A2 PE=2 SV=2)

HSP 1 Score: 70.0922 bits (170), Expect = 1.363e-11
Identity = 46/149 (30.87%), Postives = 73/149 (48.99%), Query Frame = -3
Query:  228 EEIKKMDYLQAALSEALRLYPSVPVDHKEVVEDDVFPDGTAVKKGTKVIYAIYAMGRMEAIWGKDCREFKPERWLRDGR---YTSESAYKFTAFNGGPRLCLGKDFAYYQMKYAAASIIYRYRVKVVKGHPV--SPKLALTMYMKHGLK 659
            E+++KM YL+A + E LR +P         V +D    G  V K   + + +  +GR    W ++   FKPER++ +      T     K   F  G R+C G   A   ++Y  A+++  ++ K V+GH V  + KL  T+ MKH LK
Sbjct:  350 EDVEKMPYLKAVVLEGLRRHPPGHFLLPHSVTEDTVLGGYKVPKNGTINFMVAEIGRDPVEW-EEPMAFKPERFMGEEEAVDLTGSRGIKMMPFGAGRRICPGIGLAMLHLEYYVANMVREFQWKEVQGHEVDLTEKLEFTVVMKHPLK 497          
BLAST of CN188880 vs. ExPASy Swiss-Prot
Match: C82A3_SOYBN (Cytochrome P450 82A3 OS=Glycine max GN=CYP82A3 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.363e-11
Identity = 42/150 (28.00%), Postives = 70/150 (46.67%), Query Frame = -3
Query:  273 GKMKESSSNSL----VFKPEEIKKMDYLQAALSEALRLYPSVPVDHKEVVEDDVFPDGTAVKKGTKVIYAIYAMGRMEAIWGKDCREFKPERWLRDGRYTSESAYKF--TAFNGGPRLCLGKDFAYYQMKYAAASIIYRYRVKVVKGHPV 704
            GK KE     +      +  +I K+ YLQA + E LRLYP  P        ++    G  +KKGT++I+ ++ + R  ++W  D  EFKPER+L   +      + F    F  G R+C G       + +  A++++ + +      PV
Sbjct:  347 GKAKEEIDMQIGKDEYIRESDISKLVYLQAIVKETLRLYPPAPFSSPREFTENCILGGYHIKKGTRLIHNLWKIHRDPSVW-SDPLEFKPERFLTTHKDVDLRGHNFELLPFGSGRRVCAGMSLGLNMVHFTLANLLHSFDILNPSAEPV 495          
BLAST of CN188880 vs. ExPASy Swiss-Prot
Match: C13A8_CAEEL (Putative cytochrome P450 CYP13A8 OS=Caenorhabditis elegans GN=cyp-13A8 PE=2 SV=2)

HSP 1 Score: 70.0922 bits (170), Expect = 1.363e-11
Identity = 40/136 (29.41%), Postives = 67/136 (49.26%), Query Frame = -3
Query:  303 EDGKMKESSSNSLVFKPEEIKKMDYLQAALSEALRLYPSVPVDHKEVVEDDVFPDGTAVKKGTKVIYAIYAMGRMEAIWGKDCREFKPERWLRDGRYTSESAYKFTAFNGGPRLCLGKDFAYYQMKYAAASIIYRY 710
            +D   KE  ++ + F  +++ K+ Y+   + E+LRL+P     +      +       V+ G  V+   + +   + +WG D  EFKPERW  D   T + AY   +F  GPR+CLG  FA  + K   + I+ +Y
Sbjct:  347 QDEVDKECPNDEITF--DQLSKLKYMDNVIKESLRLFPFASFANSRRCMRNTVIGEQIVEAGVDVMIDTWTLHHDKNVWGNDVEEFKPERW--DSPLTPQQAY--LSFGAGPRVCLGMRFALLEQKGLLSHILKKY 476          
BLAST of CN188880 vs. ExPASy Swiss-Prot
Match: C13A7_CAEEL (Putative cytochrome P450 CYP13A7 OS=Caenorhabditis elegans GN=cyp-13A7 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.363e-11
Identity = 40/137 (29.20%), Postives = 64/137 (46.72%), Query Frame = -3
Query:  252 EEIKKMDYLQAALSEALRLYPSVPVDHKEVVEDDVFPDGTAVKKGTKVIYAIYAMGRMEAIWGKDCREFKPERW-LRDGRYTSESAYKFTAFNGGPRLCLGKDFAYYQMKYAAASIIYRYRVKVVKGHPVSPKLALT 659
            +++ K+ YL+  + EALRLYP   + H           G  ++ GT +    +++     +WG D  EFKPERW   D  + ++  Y    F  GPR+C+G   A  +MK    +I+  Y  +      +  KL  T
Sbjct:  368 DQLSKLKYLECVVKEALRLYPLASLVHNRKCLKTTNVLGMEIEAGTNINVDTWSLHHDPKVWGDDVNEFKPERWESGDELFFAKGGY--LPFGMGPRICIGMRLAMMEMKMLLTNILKNYTFETTPETVIPLKLVGT 502          
BLAST of CN188880 vs. ExPASy Swiss-Prot
Match: CP6D5_DROME (Probable cytochrome P450 6d5 OS=Drosophila melanogaster GN=Cyp6d5 PE=1 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.780e-11
Identity = 43/143 (30.07%), Postives = 75/143 (52.45%), Query Frame = -3
Query:  264 EEIKKMDYLQAALSEALRLYPSVPVDHKEVVEDDVFPDG-TAVKKGTKVIYAIYAMGRMEAIWGKDCREFKPERWLRDGRYTSESAYKFTAFNGGPRLCLGKDFAYYQMKYAAASIIYRYRVKV----------VKGHPVSPK 659
            + I  M YL+A + E  R YP++P+ ++   +D   PD    ++KGT +I ++  M R E  +  D   +KPER+L +G+  +++AY    F  GPR+C+G       +K A A ++  + +++          V G P+ PK
Sbjct:  358 DAISDMKYLEACILETARKYPALPLLNRICTKDYPVPDSKLVIQKGTPIIISLIGMHRDEEYF-PDPLAYKPERYLENGKDYTQAAY--LPFGEGPRMCIGARMGKVNVKIAIAKVLSNFDLEIRKEKCEIEFGVYGIPLMPK 497          
The following BLAST results are available for this feature:
BLAST of CN188880 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 124
Match NameE-valueIdentityDescription
C76A1_SOLME1.043e-1130.77Cytochrome P450 76A1 (Fragment) OS=Solanum melonge... [more]
C75A1_PINTA1.043e-1131.33Cytochrome P450 750A1 OS=Pinus taeda GN=CYP750A1 P... [more]
C516B_DICDI1.043e-1128.26Probable cytochrome P450 516B1 OS=Dictyostelium di... [more]
CP4E2_DROME1.363e-1133.88Cytochrome P450 4e2 OS=Drosophila melanogaster GN=... [more]
CCD1D_DROME1.363e-1135.20Probable cytochrome P450 12d1 distal, mitochondria... [more]
C89A2_ARATH1.363e-1130.87Cytochrome P450 89A2 OS=Arabidopsis thaliana GN=CY... [more]
C82A3_SOYBN1.363e-1128.00Cytochrome P450 82A3 OS=Glycine max GN=CYP82A3 PE=... [more]
C13A8_CAEEL1.363e-1129.41Putative cytochrome P450 CYP13A8 OS=Caenorhabditis... [more]
C13A7_CAEEL1.363e-1129.20Putative cytochrome P450 CYP13A7 OS=Caenorhabditis... [more]
CP6D5_DROME1.780e-1130.07Probable cytochrome P450 6d5 OS=Drosophila melanog... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0006P06_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0006P06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188880 ID=CN188880; Name=CN188880; organism=Citrus sinensis; type=EST; length=724bp
TTTTTTTTTTTTTTTTTATTAAATACAACCCTTTATATTCCCATTTAAAT
TATGTTTCAATCAATTCCATGTATTTCTAACACATATATATTGCAATACC
AATAATAATAATATGGCTAAAAATTATGAAAAGCAAACATATTTTATTGA
CACAAAGTGAGCTCTCAATTTATCATTCACTTGAAGTATTTTTGCAGCTC
AGACTCATCTCGCTTGCATAGGTTCACCTTCAAGCCATGCTTCATGTACA
TTGTCAACGCAAGCTTTGGTGACACCGGATGACCCTTCACCACCTTAACA
CGGTAGCGGTAAATGATGGAGGCGGCAGCGTATTTCATCTGATAGTAGGC
GAAATCTTTGCCGAGGCAGAGCCTGGGGCCACCGTTGAAGGCAGTGAACT
TGTAGGCTGATTCACTCGTATAACGGCCGTCTCTTAGCCATCTTTCTGGC
TTGAATTCTCTACAATCCTTTCCCCATATTGCCTCCATTCTTCCCATTGC
ATAAATTGCATATATCACTTTTGTTCCCTTCTTTACAGCTGTCCCATCTG
GAAATACATCGTCTTCAACCACCTCTTTGTGATCAACAGGCACAGAGGGA
TACAACCTCAAAGCCTCTGATAATGCAGCTTGCAAATAATCCATTTTTTT
AATCTCCTCAGGCTTAAACACCAATGAATTACTGCTACTCTCCTTCATTT
TCCCGTCTTCTCTTTCAGCAATTA
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