CN182097

Overview
NameCN182097
Unique NameCN182097
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length718
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12798 contig Csv1_Contig12798:206..923. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN182097 vs. ExPASy Swiss-Prot
Match: YPI1_VIBAL (UPF0001 protein in pilT-proC intergenic region OS=Vibrio alginolyticus PE=3 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 1.342e-35
Identity = 100/206 (48.54%), Postives = 123/206 (59.71%), Query Frame = -1
Query:  122 SKTKPVSVIRQVYEAGHRCFGENYVQEIVEK----AAQLPDD-LEWHFIGNLQSNKVKPLLAGVPNLAMVESVDNEKIAGRLNRMVETMGRKPLKVLVQVNTSGEESKSGVEPSGCLELVKHVSQNCPNLEFCGLMTI--GMPDYTSTPENFKTLAKCRSEVCKALGIPEEQCDLSMGMSGDFELAIEMGSTNVRIGSTIFGAREY 718
            SKTKPV  I + Y+AG   FGENYVQE V K    A   PD+ +EWHFIG +QSNK + +     +   V ++D  KIA RLN        KPL+VL+QVNTSGE SKSGV  +   EL + +S+  PNL   GLM+I   + DY S    F+ LA  +  +      PE    LSMGMSGD   AIE GST VRIG+ IFGAR+Y
Sbjct:   35 SKTKPVEAILEAYQAGQTAFGENYVQEGVSKVQHFAEHYPDNRIEWHFIGPIQSNKSRLV---AEHFDWVHTIDRTKIAQRLNDQ-RPSELKPLQVLIQVNTSGEASKSGVTEAEVFELAELISR-LPNLTLRGLMSIPANVSDYESQLHEFQKLATLKQTL--EAQFPEIDT-LSMGMSGDMTAAIEAGSTMVRIGTAIFGARDY 232          
BLAST of CN182097 vs. ExPASy Swiss-Prot
Match: YBD6_YEAST (UPF0001 protein YBL036C OS=Saccharomyces cerevisiae GN=YBL036C PE=1 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 4.318e-34
Identity = 96/211 (45.50%), Postives = 127/211 (60.19%), Query Frame = -1
Query:  110 SKTKPVSVIRQVYEAGHRCFGENYVQEIVEKAAQLPDDLEWHFIGNLQSNKVKPLLAGVPNLAMVESVDNEKIAGRLN--RMVETMGRKPLKVLVQVNTSGEESKSGV-EPSGCLELVK-HVSQNCPNLEFCGLMTIGM--PDYTSTPEN--FKTLAKCRSEVCKALGIPEEQCDLSMGMSGDFELAIEMGSTNVRIGSTIFGAREYPKKN 718
            SK KP S I+ +Y+ G R FGENYVQE++EKA  LPDD++WHFIG LQ+NK K  LA VPNL  VE++D+ K A +LN  R        P+   VQ+NTS E+ KSG+   +   E++   +S+ C  ++  GLMTIG     +  + EN  F TL + + ++    G       LSMGMS DF  AI  G+  VRIG+ IFGAR  P KN
Sbjct:   48 SKLKPASDIQILYDHGVREFGENYVQELIEKAKLLPDDIKWHFIGGLQTNKCKD-LAKVPNLYSVETIDSLKKAKKLNESRAKFQPDCNPILCNVQINTSHEDQKSGLNNEAEIFEVIDFFLSEECKYIKLNGLMTIGSWNVSHEDSKENRDFATLVEWKKKIDAKFG---TSLKLSMGMSADFREAIRQGTAEVRIGTDIFGAR--PPKN 252          
BLAST of CN182097 vs. ExPASy Swiss-Prot
Match: Y274_AQUAE (UPF0001 protein aq_274 OS=Aquifex aeolicus GN=aq_274 PE=3 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 4.774e-33
Identity = 88/204 (43.14%), Postives = 121/204 (59.31%), Query Frame = -1
Query:  122 SKTKPVSVIRQVYEAGHRCFGENYVQEIVEKAAQLPD-DLEWHFIGNLQSNKVKPLLAGVPNLAMVESVDNEKIAGRLNRMVETMGRKPLKVLVQVNTSGEESKSGVEPSGCLELVKHVSQNCPNLEFCGLMTIGMPDYTSTPEN----FKTLAKCRSEVCKALGIPEEQCDLSMGMSGDFELAIEMGSTNVRIGSTIFGAREY 718
            SKT P  VIR+ Y  G + +GEN VQE ++K   L D DLEWHFIG LQ+NKVK L+  V    ++ S+D + +A  + +           VL++VN  GEE+K GVEP    EL ++  +  PN++  GLMTI  P Y   PE+    F+ L + R E+ +   +      LSMGMS DFE+AIE G+T VRIG+ +FG R+Y
Sbjct:   34 SKTVPPEVIREFYNCGLKVYGENRVQEFLKKYEALKDLDLEWHFIGRLQTNKVKYLMGKV---VLIHSLDRKNLADEIQKRA-FKNNIVQDVLIEVNVGGEETKGGVEPENLKELFEYTLE-LPNVKVLGLMTI--PPYLENPEDVRPYFRKLRELRDELQREYNVALPH--LSMGMSHDFEVAIEEGATIVRIGTLLFGERKY 228          
BLAST of CN182097 vs. ExPASy Swiss-Prot
Match: Y394_PSEAE (UPF0001 protein PA0394 OS=Pseudomonas aeruginosa GN=PA0394 PE=3 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 2.006e-31
Identity = 91/201 (45.27%), Postives = 114/201 (56.72%), Query Frame = -1
Query:  122 SKTKPVSVIRQVYEAGHRCFGENYVQEIVEKAAQLPD-DLEWHFIGNLQSNKVKPLLAGVPNLAMVESVDNEKIAGRLNRMVETMGRKPLKVLVQVNTSGEESKSGVEPSGCLELVKHVSQNCPNLEFCGLMTIGMPDYTSTPENFKTLAKCRSEVCKA-LGIPEEQCDLSMGMSGDFELAIEMGSTNVRIGSTIFGAREY 718
            SKTKP + +R+ + AG R FGENY+QE + K A+L D  L WHFIG +QSNK +P+     +   V SVD  KIA RL+      G  PL V +QVN SGE SKSG  P     L + V Q  PNL   GLM I  P      ++    A+ R  +    LG+      LSMGMS D E AI  G+T VRIG+ +FGAR+Y
Sbjct:   35 SKTKPAAAVREAHAAGLRDFGENYLQEALGKQAELADLPLNWHFIGPIQSNKTRPI---AEHFQWVHSVDRLKIAQRLSEQ-RPAGLPPLNVCLQVNVSGEASKSGCAPEDLPALAEAVKQ-LPNLRLRGLMAIPEPTAERAAQH-AAFARLRELLLDLNLGLD----TLSMGMSDDLEAAIGEGATWVRIGTALFGARDY 225          
BLAST of CN182097 vs. ExPASy Swiss-Prot
Match: YGGS_ECOLI (UPF0001 protein yggS OS=Escherichia coli (strain K12) GN=yggS PE=1 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 3.541e-28
Identity = 87/209 (41.63%), Postives = 110/209 (52.63%), Query Frame = -1
Query:  113 SKTKPVSVIRQVYEAGHRCFGENYVQEIVEKAAQLPD----DLEWHFIGNLQSNKVKPLLAGVPNLAMVESVDNEKIAGRLNRMVETMGRKPLKVLVQVNTSGEESKSGVEPSGCLELVKHVSQNCPNLEFCGLMTIGMPDYTSTPENFKTLAKCRSEVCKALGIPEEQCD---LSMGMSGDFELAIEMGSTNVRIGSTIFGAREYPKK 718
            SKTKP S I +  +AG R FGENYVQE V+K     +     LEWHFIG LQSNK + +     +     ++D  +IA RLN         PL VL+Q+N S E SKSG++ +   EL   V++  P L   GLM I  P+     E  +     R       G+         LS+GMS D E AI  GST VRIG+ IFGAR+Y KK
Sbjct:   35 SKTKPASAIAEAIDAGQRQFGENYVQEGVDKIRHFQELGVTGLEWHFIGPLQSNKSRLV---AEHFDWCHTIDRLRIATRLNDQ-RPAELPPLNVLIQINISDENSKSGIQLAELDELAAAVAE-LPRLRLRGLMAIPAPE----SEYVRQFEVARQMAVAFAGLKTRYPHIDTLSLGMSDDMEAAIAAGSTMVRIGTAIFGARDYSKK 234          
BLAST of CN182097 vs. ExPASy Swiss-Prot
Match: YGGS_ECOL6 (UPF0001 protein yggS OS=Escherichia coli O6 GN=yggS PE=3 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 3.541e-28
Identity = 87/209 (41.63%), Postives = 110/209 (52.63%), Query Frame = -1
Query:  113 SKTKPVSVIRQVYEAGHRCFGENYVQEIVEKAAQLPD----DLEWHFIGNLQSNKVKPLLAGVPNLAMVESVDNEKIAGRLNRMVETMGRKPLKVLVQVNTSGEESKSGVEPSGCLELVKHVSQNCPNLEFCGLMTIGMPDYTSTPENFKTLAKCRSEVCKALGIPEEQCD---LSMGMSGDFELAIEMGSTNVRIGSTIFGAREYPKK 718
            SKTKP S I +  +AG R FGENYVQE V+K     +     LEWHFIG LQSNK + +     +     ++D  +IA RLN         PL VL+Q+N S E SKSG++ +   EL   V++  P L   GLM I  P+     E  +     R       G+         LS+GMS D E AI  GST VRIG+ IFGAR+Y KK
Sbjct:   35 SKTKPASAIAEAIDAGQRQFGENYVQEGVDKIRHFQELGVTGLEWHFIGPLQSNKSRLV---AEHFDWCHTIDRLRIATRLNDQ-RPAELPPLNVLIQINISDENSKSGIQLAELDELAAAVAE-LPRLRLRGLMAIPAPE----SEYVRQFEVARQMAVAFAGLKTRYPHIDTLSLGMSDDMEAAIAAGSTMVRIGTAIFGARDYSKK 234          
BLAST of CN182097 vs. ExPASy Swiss-Prot
Match: YGGS_ECO57 (UPF0001 protein yggS OS=Escherichia coli O157:H7 GN=yggS PE=3 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 3.541e-28
Identity = 87/209 (41.63%), Postives = 110/209 (52.63%), Query Frame = -1
Query:  113 SKTKPVSVIRQVYEAGHRCFGENYVQEIVEKAAQLPD----DLEWHFIGNLQSNKVKPLLAGVPNLAMVESVDNEKIAGRLNRMVETMGRKPLKVLVQVNTSGEESKSGVEPSGCLELVKHVSQNCPNLEFCGLMTIGMPDYTSTPENFKTLAKCRSEVCKALGIPEEQCD---LSMGMSGDFELAIEMGSTNVRIGSTIFGAREYPKK 718
            SKTKP S I +  +AG R FGENYVQE V+K     +     LEWHFIG LQSNK + +     +     ++D  +IA RLN         PL VL+Q+N S E SKSG++ +   EL   V++  P L   GLM I  P+     E  +     R       G+         LS+GMS D E AI  GST VRIG+ IFGAR+Y KK
Sbjct:   35 SKTKPASAIAEAIDAGQRQFGENYVQEGVDKIRHFQELGVTGLEWHFIGPLQSNKSRLV---AEHFDWCHTIDRLRIATRLNDQ-RPAELPPLNVLIQINISDENSKSGIQLAELDELAAAVAE-LPRLRLRGLMAIPAPE----SEYVRQFEVARQMAVAFAGLKTRYPHIDTLSLGMSDDMEAAIAAGSTMVRIGTAIFGARDYSKK 234          
BLAST of CN182097 vs. ExPASy Swiss-Prot
Match: Y395_HELPJ (UPF0001 protein jhp_0986 OS=Helicobacter pylori J99 GN=jhp_0986 PE=3 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 5.113e-27
Identity = 80/197 (40.61%), Postives = 108/197 (54.82%), Query Frame = -1
Query:  137 SKTKPVSVIRQVYEAGHRCFGENYVQEIVEKAAQLPD-DLEWHFIGNLQSNKVKPLLAGVPNLAMVESVDNEKIAGRLNRMVETMGRKPLKVLVQVNTSGEESKSGVEPSGCLELVKHVSQNCPNLEFCGLMTIG--MPDYTSTPENFKTLAKCRSEVCKALGIPEEQCDLSMGMSGDFELAIEMGSTNVRIGSTIF 718
            SK      I+  Y    R FGEN VQ++  K   L    LEWH IG+LQ NK+  LL+  P  A++ S+D+ K+A ++ +  E +G   L  L+QVN++ EESKSGV P   LE    +S+ C  L+  GLM IG    D T   ++F T  K   ++  A         LSMGMS DFELAI  G+  +RIGS +F
Sbjct:   34 SKNASPEAIQHYYNCSQRAFGENKVQDLKIKMHSLEHLPLEWHMIGSLQENKINALLSLKP--ALLHSLDSLKLALKIEKRCEILGVN-LNALLQVNSAYEESKSGVVPEEALETYSQISETCKRLKLKGLMCIGAHTDDETKIEKSFTTTKKLFDQIKNA-------SVLSMGMSDDFELAIACGANLLRIGSFLF 220          
BLAST of CN182097 vs. ExPASy Swiss-Prot
Match: Y395_HELPY (UPF0001 protein HP_0395 OS=Helicobacter pylori GN=HP_0395 PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 8.721e-27
Identity = 79/197 (40.10%), Postives = 109/197 (55.33%), Query Frame = -1
Query:  137 SKTKPVSVIRQVYEAGHRCFGENYVQEIVEKAAQLPD-DLEWHFIGNLQSNKVKPLLAGVPNLAMVESVDNEKIAGRLNRMVETMGRKPLKVLVQVNTSGEESKSGVEPSGCLELVKHVSQNCPNLEFCGLMTIG--MPDYTSTPENFKTLAKCRSEVCKALGIPEEQCDLSMGMSGDFELAIEMGSTNVRIGSTIF 718
            SK      I+  Y    R FGEN VQ++  K   L    LEWH IG+LQ NK+  LL+  P  A++ S+D+ K+A ++ +  E +G   L  L+QVN++ EESKSGV P   LE+   +S+ C +L+  GLM IG    D     ++F T  K   ++  A         LSMGMS DFELAI  G+  +RIGS +F
Sbjct:   34 SKNASPEAIQHYYNCSQRAFGENKVQDLKTKMHSLEHLPLEWHMIGSLQENKINALLSLKP--ALLHSLDSLKLALKIEKRCEILGVN-LNALLQVNSAYEESKSGVVPEEALEIYSQISETCKHLKLKGLMCIGAHTDDEKEIEKSFITTKKLFDQIKNA-------SVLSMGMSDDFELAIACGANLLRIGSFLF 220          
BLAST of CN182097 vs. ExPASy Swiss-Prot
Match: Y556_SYNY3 (UPF0001 protein slr0556 OS=Synechocystis sp. (strain PCC 6803) GN=slr0556 PE=3 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 8.447e-22
Identity = 77/209 (36.84%), Postives = 114/209 (54.55%), Query Frame = -1
Query:  128 SKTKPVSVIRQVYEAGHRCFGENYVQEIVEKAAQLPD--DLEWHFIGNLQSNKVKPLLAGVPNLAMVESVDNEKIAGRLNRMVETMGRKPLKVLVQVNTSGEESKSGVEPSGC------LELVKHVSQNCPNLEFCGLMTIGMPDYTSTPENFKTLAKCRSEVCKALGIPEEQC----DLSMGMSGDFELAIEMGSTNVRIGSTIFGAR 718
            +KTK ++ I   Y AG R F E+ +QE + K   L +  D+ WHFIG LQSNK + +   V N   + SVDN  IA +L+R+ E + + P + L+Q+    +E+KSG            LEL+K       NL+ CGLMTI +P   S  +   T  + ++    A  I ++      +LSMGMSGD+  AI  G+T +R+G+ +FG R
Sbjct:   24 TKTKAIADIEAAYGAGIRDFAESRIQEALPKIEALANYQDINWHFIGRLQSNKARKV---VENFTYIHSVDNLAIAVKLDRIAEELNKFP-QGLLQIKLLPDENKSGWTREELKLDLPQLELLK-------NLKICGLMTI-LPLGLSPGDRQLTFGELKN---LATAINQQSSLSLTELSMGMSGDYPEAIAAGATMIRLGTILFGDR 217          
The following BLAST results are available for this feature:
BLAST of CN182097 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 29
Match NameE-valueIdentityDescription
YPI1_VIBAL1.342e-3548.54UPF0001 protein in pilT-proC intergenic region OS=... [more]
YBD6_YEAST4.318e-3445.50UPF0001 protein YBL036C OS=Saccharomyces cerevisia... [more]
Y274_AQUAE4.774e-3343.14UPF0001 protein aq_274 OS=Aquifex aeolicus GN=aq_2... [more]
Y394_PSEAE2.006e-3145.27UPF0001 protein PA0394 OS=Pseudomonas aeruginosa G... [more]
YGGS_ECOLI3.541e-2841.63UPF0001 protein yggS OS=Escherichia coli (strain K... [more]
YGGS_ECOL63.541e-2841.63UPF0001 protein yggS OS=Escherichia coli O6 GN=ygg... [more]
YGGS_ECO573.541e-2841.63UPF0001 protein yggS OS=Escherichia coli O157:H7 G... [more]
Y395_HELPJ5.113e-2740.61UPF0001 protein jhp_0986 OS=Helicobacter pylori J9... [more]
Y395_HELPY8.721e-2740.10UPF0001 protein HP_0395 OS=Helicobacter pylori GN=... [more]
Y556_SYNY38.447e-2236.84UPF0001 protein slr0556 OS=Synechocystis sp. (stra... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0001P05_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001P05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN182097 ID=CN182097; Name=CN182097; organism=Citrus sinensis; type=EST; length=718bp
GAGGTTTGCATAAAAAATATGATTAATCTACTATACTCTAGTTTCAGTAC
ATTAAGATAAATACATAACAATAGCCAACGTTTTCAGAACAGGTGAAAAA
AAAAGTTTAGTTCTTCTTCGGATATTCCCTTGCACCAAATATTGTGGATC
CAATCCTGACATTGGTGCTCCCCATTTCAATAGCAAGCTCGAAGTCACCA
GACATTCCCATAGACAGATCACATTGCTCTTCTGGTATTCCAAGAGCCTT
GCATACCTCACTTCTGCATTTTGCTAATGTCTTGAAGTTCTCCGGGGTCG
ATGTGTAATCTGGCATCCCAATTGTCATTAGGCCACAAAACTCAAGATTC
GGACAGTTTTGACTAACATGTTTCACAAGTTCCAGACACCCTGAAGGCTC
AACTCCAGATTTCGATTCTTCTCCACTGGTATTCACTTGAACCAAGACTT
TTAAAGGCTTCCTTCCCATGGTTTCAACCATACGATTAAGACGACCTGCA
ATCTTCTCGTTGTCCACACTTTCTACCATTGCCAGGTTAGGCACACCAGC
CAATAAAGGTTTCACTTTATTGCTCTGCAGGTTCCCAATGAAATGCCATT
CTAGATCATCTGGAAGCTGAGCCGCCTTTTCCACTATTTCTTGAACGTAG
TTTTCACCGAAACATCGGTGACCGGCCTCATAAACCTGACGGATTACTGA
GACCGGTTTGGTTTTGCT
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