CN182097

Overview
NameCN182097
Unique NameCN182097
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length718
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12798 contig Csv1_Contig12798:206..923. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN182097 vs. ExPASy Swiss-Prot
Match: YLME_BACSU (UPF0001 protein ylmE OS=Bacillus subtilis GN=ylmE PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 3.210e-21
Identity = 72/198 (36.36%), Postives = 109/198 (55.05%), Query Frame = -1
Query:  134 TKPVSVIR--QVYEAGHRCFGENYVQEIVEKAAQLPDDLEWHFIGNLQSNKVKPLLAGVPNLAMVESVDNEKIAGRLNRMVETMGRKPLKVLVQVNTSGEESKSGVEPSGCLELVKHVSQNCPNLEFCGLMTIG--MPDYTSTPENFKTLAKCRSEVCKALGIPEEQC-DLSMGMSGDFELAIEMGSTNVRIGSTIFG 712
            TK VS  R  +  +AG  C GEN   E++ K   +  + EWHFIG+LQS K K +   V +++ + S+D   +A    + +E      ++  VQVNTS E SK G++    +  ++ +S    ++   GLMT+     D       F++L + R +V K L  P   C +LSMGMS DFE+AIE G+T +RIGS++ G
Sbjct:   34 TKYVSPERAQEAVDAGITCLGENRDAELLRKQELMKGNPEWHFIGSLQSRKAKSV---VNSVSYIHSLDRLSLA----KEIEKRAEGTVRCFVQVNTSLEPSKHGMKKEEVIPFIQELS-GFEHILVAGLMTMAPLTDDQDQIRSCFRSLRELRDQVQK-LNQPNAPCTELSMGMSNDFEIAIEEGATYIRIGSSLVG 222          
BLAST of CN182097 vs. ExPASy Swiss-Prot
Match: Y531_BUCAP (UPF0001 protein BUsg_531 OS=Buchnera aphidicola subsp. Schizaphis graminum GN=BUsg_531 PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 3.673e-17
Identity = 69/197 (35.03%), Postives = 100/197 (50.76%), Query Frame = -1
Query:  137 SKTKPVSVIRQVYEAGHRCFGENYVQEIVEKAAQLP--DDLEWHFIGNLQSNKVKPLLAGVPNLAMVESVDNEKIAGRLNRMVETMGRKPLKVLVQVNTSGEESKSGVEPSGCLELVKHVSQNCPNLEFCGLMTIGMPDYTSTPENFKTLAKCRSEVCKALGIPEEQCD-LSMGMSGDFELAIEMGSTNVRIGSTIF 718
            SK + +  I+    +G   FGENYVQE ++K  +L    ++ WHFIG +QSNK K +     N    +++D EKIA  LN+  E     P+ VL+Q+N S E +K+G+      +L K +S   PNL F G+M   MP+            K  + +   L    +  D LS+G S D E A+   S  +RIG  IF
Sbjct:   35 SKNQGIDKIKLAISSGIHEFGENYVQEGIDKIQKLKKYQNIIWHFIGKVQSNKTKII---AENFDWCQTIDREKIAILLNKYREKKS-FPMNVLMQINISNEVTKNGICIKNYKKLAKTISL-MPNLNFRGIMM--MPEVEKKMIKQNDNYKNGNFIFNELKKEYQSIDTLSLGTSFDIENALLFHSNMIRIGRFIF 224          
BLAST of CN182097 vs. ExPASy Swiss-Prot
Match: Y919_MYCLE (UPF0001 protein ML0919 OS=Mycobacterium leprae GN=ML0919 PE=3 SV=2)

HSP 1 Score: 83.5741 bits (205), Expect = 1.181e-15
Identity = 65/212 (30.66%), Postives = 103/212 (48.58%), Query Frame = -1
Query:  134 SKTKPVSVIRQVYEAGHRCFGENYVQEIVEKAAQLPD----------DLEWHFIGNLQSNKVKPLLAGVPNLAMVESVDNEKIAGRLNRMVETM---GRK--PLKVLVQVNTSGEESKSGVEPS--GCLELVKHVSQNCPNLEFCGLMTIGMPDYTSTPENFKTLAKCRSEVCKALGIPEEQCDLSMGMSGDFELAIEMGSTNVRIGSTIFG 718
            SK  P + +  +   G R  GE+  QE   KAA+  +           + WH +G +Q NKV+ L           S+D+ ++   L+R V      GR+  PL+V VQ++  G+ S+ GV  +  G ++ V    +   +LE  GLM  G+P     P+  +   + R E  + L    +   LS GMS DFE+A++ GST VR+G+ + G
Sbjct:   46 SKFFPATDVAILSRLGCRSVGESRAQEASTKAAEFAELLGVSREEKSSIHWHMVGQIQRNKVRSLAQWAHT---AHSIDSLQLVAALDRAVAAALAGGRREQPLQVYVQISLDGDISRGGVNVTAPGAVDRVCAQVEESKSLELVGLM--GIPPLGWNPD--QAFEQLRLEHRRVLRSHPDAIGLSAGMSNDFEIAVKHGSTCVRVGTALLG 250          
BLAST of CN182097 vs. ExPASy Swiss-Prot
Match: Y2153_CORGL (UPF0001 protein Cgl2153/cg2364 OS=Corynebacterium glutamicum GN=Cgl2153 PE=3 SV=2)

HSP 1 Score: 81.6481 bits (200), Expect = 4.489e-15
Identity = 69/203 (33.99%), Postives = 97/203 (47.78%), Query Frame = -1
Query:  128 SKTKPVSVIRQVYEAGHRCFGENYVQEIVEKAAQLPDDLEWHFIGNLQSNKVKPLLAGVPNLAMVESVDNEKIAGRLNRMVETMGRK------PLKVLVQVNTSGEESKSGVEPSGCLELVKHVSQNCPNLEFCGLMTIGMPDYTSTPENFKTLAKCRSEVCKALGIPEEQCDLSMGMSGDFELAIEMGSTNVRIGSTIFGAR 718
            +K  PV  I+ + E G    GEN  QE   KA +LPD +++H IG +QS K   +       A V SVD+EKIA  L R V     +       L   +Q++  G+ S+ G   S   +L   +S    +L F GLM +  P     PE  K  ++ R  +       +   + S GMSGD   AI+ GST VR+G+ I G R
Sbjct:   25 TKFHPVEDIKILQEFGVTAVGENREQEARAKALELPD-MDFHMIGQIQSKKANSIARWA---AAVHSVDSEKIAEALGRGVALALDRGDRTSDELPCFIQLSLDGDPSRGGTPLSQVTQLADCISDTT-HLRFEGLMCV--PPLGWGPE--KAFSQARDVLSGLEEHFDRSLEFSAGMSGDLVAAIKHGSTIVRVGTEILGNR 218          
BLAST of CN182097 vs. ExPASy Swiss-Prot
Match: Y2172_MYCBO (UPF0001 protein Mb2172c OS=Mycobacterium bovis GN=Mb2172c PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.217e-13
Identity = 62/215 (28.84%), Postives = 99/215 (46.05%), Query Frame = -1
Query:  128 SKTKPVSVIRQVYEAGHRCFGENYVQEIVEKAAQL-----------PDDLEWHFIGNLQSNKVKPLLAGVPNLAMVESVDNEKIAGRLNRMV-----ETMGRKPLKVLVQVNTSGEESKSGVEPS--GCLELVKHVSQNCPNLEFCGLMTIGMPDYTSTPENFKTLAKCRSEVCKALGIPEEQCDLSMGMSGDFELAIEMGSTNVRIGSTIFGAR 718
            +K  P + +  ++  G R  GE+  QE   K A+L              + WH +G +Q NK   L           SVD+ ++   L+R V     E    + L+V VQV+  G+ S+ GV+ +  G ++ +    Q    LE  GLM  G+P     P+  +   + +SE  +   +      LS GMS D E+A++ GST VR+G+ + G R
Sbjct:   46 TKFFPATDVAILFRLGCRSVGESREQEASAKMAELNRLLAAAELGHSGGVHWHMVGRIQRNKAGSLARWAHT---AHSVDSSRLVTALDRAVVAALAEHRRGERLRVYVQVSLDGDGSRGGVDSTTPGAVDRICAQVQESEGLELVGLM--GIPPLDWDPD--EAFDRLQSEHNRVRAMFPHAIGLSAGMSNDLEVAVKHGSTCVRVGTALLGPR 253          
BLAST of CN182097 vs. ExPASy Swiss-Prot
Match: Y2148_MYCTU (UPF0001 protein Rv2148c/MT2207 OS=Mycobacterium tuberculosis GN=Rv2148c PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.217e-13
Identity = 62/215 (28.84%), Postives = 99/215 (46.05%), Query Frame = -1
Query:  128 SKTKPVSVIRQVYEAGHRCFGENYVQEIVEKAAQL-----------PDDLEWHFIGNLQSNKVKPLLAGVPNLAMVESVDNEKIAGRLNRMV-----ETMGRKPLKVLVQVNTSGEESKSGVEPS--GCLELVKHVSQNCPNLEFCGLMTIGMPDYTSTPENFKTLAKCRSEVCKALGIPEEQCDLSMGMSGDFELAIEMGSTNVRIGSTIFGAR 718
            +K  P + +  ++  G R  GE+  QE   K A+L              + WH +G +Q NK   L           SVD+ ++   L+R V     E    + L+V VQV+  G+ S+ GV+ +  G ++ +    Q    LE  GLM  G+P     P+  +   + +SE  +   +      LS GMS D E+A++ GST VR+G+ + G R
Sbjct:   46 TKFFPATDVAILFRLGCRSVGESREQEASAKMAELNRLLAAAELGHSGGVHWHMVGRIQRNKAGSLARWAHT---AHSVDSSRLVTALDRAVVAALAEHRRGERLRVYVQVSLDGDGSRGGVDSTTPGAVDRICAQVQESEGLELVGLM--GIPPLDWDPD--EAFDRLQSEHNRVRAMFPHAIGLSAGMSNDLEVAVKHGSTCVRVGTALLGPR 253          
BLAST of CN182097 vs. ExPASy Swiss-Prot
Match: Y1368_DEIRA (UPF0001 protein DR_1368 OS=Deinococcus radiodurans GN=DR_1368 PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.217e-13
Identity = 66/185 (35.68%), Postives = 90/185 (48.65%), Query Frame = -1
Query:  137 QVYEAGHRCFGENYVQEIVEKAAQLPDDLEWHFIGNLQSNKVKPLLAGVPNLAMVESVDNEKIAGRLNRMVETMGRKPLKVLVQVNTSGEESKSGVEPSGCLELVKHVSQNCPNLEFCGLMTIG-MPDYTSTPENFKTLAKCRSEVCKALGIPEEQCDLSMGMSGDFELAIEMGSTNVRIGSTIF 688
            QV   G     EN  QE+ +K A LP   EWHFIG LQ NK+K  L GV    +V S++    A  +       G+ P  +L + N  GE  K GV P     +++ V      LE  GLM +    D     + F   A+   +    LG+ E    LSMGMSGD+ LA+  G+T VR+G ++F
Sbjct:   41 QVLAHGDFPLAENRGQELRDKVAGLPG-AEWHFIGPLQRNKIK-YLRGV---TLVHSIEEPWQAQAIADAAAEWGQAPAVLLQRHN--GEGQKHGVLPDDLPAVLREV--RATGLEVRGLMAMAPYDDEARAAQVFADTARQAQD----LGLVE----LSMGMSGDYPLAVAAGATLVRVGRSLF 208          
BLAST of CN182097 vs. ExPASy Swiss-Prot
Match: Y549_BUCAI (UPF0001 protein BU549 OS=Buchnera aphidicola subsp. Acyrthosiphon pisum GN=BU549 PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 7.167e-13
Identity = 60/199 (30.15%), Postives = 97/199 (48.74%), Query Frame = -1
Query:  137 SKTKPVSVIRQVYEAGHRCFGENYVQEIVEKAAQLPD--DLEWHFIGNLQSNKVKPLLAGVPNLAMVESVDNEKIAGRLNRMVETMGRKPLKVLVQVNTSGEESKSGVEPSGCLELVKHVSQ---NCPNLEFCGLMTIGMPDYTSTPENFKTLAKCRSEVCKALGIPEEQCDLSMGMSGDFELAIEMGSTNVRIGSTIF 718
            SK + ++ I +   +G   FGENY+QE + K   L    ++ WHFIG +QSNK K +     N +  ++VD EKIA  LN+        P+ VL+Q+N   E     ++ +  ++  + ++Q   + PNL   G+M +     T+  EN     K ++   +          LS+G S D + ++   S  VRIG  IF
Sbjct:   10 SKNRNINNIEEAIRSGINNFGENYLQESLIKIENLKKYKNITWHFIGKIQSNKTKKI---AQNFSWCQTVDREKIAVLLNKF-RPKNLPPINVLIQINNLKE-----LQNNRYIDQYQELAQLILSMPNLNLRGIMAVPSIK-TNVIENNLQYEKIKTIFNRFKRQYSSVDTLSLGTSVDIKESLLATSNMVRIGRNIF 198          
BLAST of CN182097 vs. ExPASy Swiss-Prot
Match: Y497_BUCBP (UPF0001 protein bbp_497 OS=Buchnera aphidicola subsp. Baizongia pistaciae GN=bbp_497 PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.352e-11
Identity = 59/198 (29.80%), Postives = 97/198 (48.99%), Query Frame = -1
Query:  137 SKTKPVSVIRQVYEAGHRCFGENYVQEIVEKAAQLPDDLEWHFIGNLQSNKVKPLLAGVPNLAMVESVDNEKIAGRLNRMVETMGRKPLKVLVQVNTSGEESKSGVEPSGCLELVKHVSQNCPNLEFCGLMTIGMPDYTSTP----ENFKTLAKCRSEVCKALGIPEEQCDLSMGMSGDFELAIEMGSTNVRIGSTIF 718
            SK + V+ I++    G   FGENYVQE   K  +L +++EWH+IG +QSNK   +     N +   ++ N+K A  LN+         L  L+Q+N          +     +L K ++ +  NL   G+M   MP + +T     +++K +      + K     +    +S+G S D + A+  GST +RIGS+IF
Sbjct:   35 SKNRSVNDIKKAILCGQNSFGENYVQESQPKI-KLFNNIEWHYIGQIQSNKAHII---AKNFSWCHTITNKKTAVLLNKY-RPYSLPKLNTLIQINIRDNTINIDDDIETIKQLAKTIN-SLDNLNLRGIMA--MPYFKNTYLEQIQSYKYIHLYFDILKKKYTYIDT---VSLGTSHDIQAALYSGSTLLRIGSSIF 221          
The following BLAST results are available for this feature:
BLAST of CN182097 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 29
Match NameE-valueIdentityDescription
YLME_BACSU3.210e-2136.36UPF0001 protein ylmE OS=Bacillus subtilis GN=ylmE ... [more]
Y531_BUCAP3.673e-1735.03UPF0001 protein BUsg_531 OS=Buchnera aphidicola su... [more]
Y919_MYCLE1.181e-1530.66UPF0001 protein ML0919 OS=Mycobacterium leprae GN=... [more]
Y2153_CORGL4.489e-1533.99UPF0001 protein Cgl2153/cg2364 OS=Corynebacterium ... [more]
Y2172_MYCBO3.217e-1328.84UPF0001 protein Mb2172c OS=Mycobacterium bovis GN=... [more]
Y2148_MYCTU3.217e-1328.84UPF0001 protein Rv2148c/MT2207 OS=Mycobacterium tu... [more]
Y1368_DEIRA3.217e-1335.68UPF0001 protein DR_1368 OS=Deinococcus radiodurans... [more]
Y549_BUCAI7.167e-1330.15UPF0001 protein BU549 OS=Buchnera aphidicola subsp... [more]
Y497_BUCBP1.352e-1129.80UPF0001 protein bbp_497 OS=Buchnera aphidicola sub... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0001P05_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001P05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN182097 ID=CN182097; Name=CN182097; organism=Citrus sinensis; type=EST; length=718bp
GAGGTTTGCATAAAAAATATGATTAATCTACTATACTCTAGTTTCAGTAC
ATTAAGATAAATACATAACAATAGCCAACGTTTTCAGAACAGGTGAAAAA
AAAAGTTTAGTTCTTCTTCGGATATTCCCTTGCACCAAATATTGTGGATC
CAATCCTGACATTGGTGCTCCCCATTTCAATAGCAAGCTCGAAGTCACCA
GACATTCCCATAGACAGATCACATTGCTCTTCTGGTATTCCAAGAGCCTT
GCATACCTCACTTCTGCATTTTGCTAATGTCTTGAAGTTCTCCGGGGTCG
ATGTGTAATCTGGCATCCCAATTGTCATTAGGCCACAAAACTCAAGATTC
GGACAGTTTTGACTAACATGTTTCACAAGTTCCAGACACCCTGAAGGCTC
AACTCCAGATTTCGATTCTTCTCCACTGGTATTCACTTGAACCAAGACTT
TTAAAGGCTTCCTTCCCATGGTTTCAACCATACGATTAAGACGACCTGCA
ATCTTCTCGTTGTCCACACTTTCTACCATTGCCAGGTTAGGCACACCAGC
CAATAAAGGTTTCACTTTATTGCTCTGCAGGTTCCCAATGAAATGCCATT
CTAGATCATCTGGAAGCTGAGCCGCCTTTTCCACTATTTCTTGAACGTAG
TTTTCACCGAAACATCGGTGACCGGCCTCATAAACCTGACGGATTACTGA
GACCGGTTTGGTTTTGCT
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