CN182096

Overview
NameCN182096
Unique NameCN182096
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length729
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN182096 vs. ExPASy Swiss-Prot
Match: PGIP_PYRCO (Polygalacturonase inhibitor OS=Pyrus communis GN=PGIP PE=1 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.141e-13
Identity = 46/106 (43.40%), Postives = 66/106 (62.26%), Query Frame = -1
Query:  394 NLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVFLRLNDNRLTGQIPREL-VGISSLKVVDVSSNDLCGTIPTS 708
            NL+G + P + KL+ L+ L L   N+ G++P  L  LK+L  LDL  NN++G IP SL++L +L  LRL+ N+LTG IP      I ++  + +S N L G IPTS
Sbjct:  106 NLTGPIQPAIAKLKGLKSLRLSWTNLSGSVPDFLSQLKNLTFLDLSFNNLTGAIPSSLSELPNLGALRLDRNKLTGHIPISFGQFIGNVPDLYLSHNQLSGNIPTS 211          
BLAST of CN182096 vs. ExPASy Swiss-Prot
Match: TMM_ARATH (Protein TOO MANY MOUTHS OS=Arabidopsis thaliana GN=TMM PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.542e-13
Identity = 49/130 (37.69%), Postives = 69/130 (53.08%), Query Frame = -1
Query:  334 LGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVFLRLNDNRLTGQIPRELVGISSLKVVDVSSNDLCGTIPTS-GPFEHIPLNNFENNPRLEGP 720
            L  +   G +  ELG L +L+ L+L+KN++ G+IP+       L SLDL  N ++G IP  +  L +L  L LN N LTG +P  L    SL  +D+S N + G IP S      + L +   N RL GP
Sbjct:  166 LRENGFLGPIPDELGNLTNLKVLDLHKNHLNGSIPLSFNRFSGLRSLDLSGNRLTGSIPGFV--LPALSVLDLNQNLLTGPVPPTLTSCGSLIKIDLSRNRVTGPIPESINRLNQLVLLDLSYN-RLSGP 292          

HSP 2 Score: 68.1662 bits (165), Expect = 5.301e-11
Identity = 43/100 (43.00%), Postives = 60/100 (60.00%), Query Frame = -1
Query:  400 RLVPELGKL-EHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVFLRLNDNRLTGQIPRELVGISSLKVVDVSSNDLCGTIP 696
            R+   LG+L   LQ L L +N   G IP ELGNL +L  LDL+ N+++G IP S  +   L  L L+ NRLTG IP  +  + +L V+D++ N L G +P
Sbjct:  149 RIPAFLGRLGSSLQTLVLRENGFLGPIPDELGNLTNLKVLDLHKNHLNGSIPLSFNRFSGLRSLDLSGNRLTGSIPGFV--LPALSVLDLNQNLLTGPVP 246          
BLAST of CN182096 vs. ExPASy Swiss-Prot
Match: PGIP_VITVI (Polygalacturonase inhibitor OS=Vitis vinifera GN=pgip PE=1 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.320e-13
Identity = 45/107 (42.06%), Postives = 62/107 (57.94%), Query Frame = -1
Query:  394 SNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVFLRLNDNRLTGQIPRELVGIS-SLKVVDVSSNDLCGTIPTS 711
            SNL+G++ P + KL+HL+ + L   N+ G +P     LK+L  LDL  NN+SG IP SL+ L +L  L L+ N LTG IP      + S   + +S N L G IP S
Sbjct:  108 SNLTGQIPPAIAKLKHLKMVRLSWTNLSGPVPAFFSELKNLTYLDLSFNNLSGPIPGSLSLLPNLGALHLDRNHLTGPIPDSFGKFAGSTPGLHLSHNQLSGKIPYS 214          
BLAST of CN182096 vs. ExPASy Swiss-Prot
Match: PGIP3_PHAVU (Polygalacturonase inhibitor 3 OS=Phaseolus vulgaris GN=PGIP3 PE=1 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.320e-13
Identity = 41/107 (38.32%), Postives = 61/107 (57.01%), Query Frame = -1
Query:  400 GNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVFLRLNDNRLTGQIPRELVGISSL-KVVDVSSNDLCGTIP 717
            G +NL G + P + KL  L YL +   N+ G IP  L  +K+L++LD   N +SG +PPS++ L +LV +  + NR++G IP      S L   + +S N L G IP
Sbjct:  114 GINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIP 220          
BLAST of CN182096 vs. ExPASy Swiss-Prot
Match: PGIP2_PHAVU (Polygalacturonase inhibitor 2 OS=Phaseolus vulgaris GN=PGIP2 PE=1 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.320e-13
Identity = 41/107 (38.32%), Postives = 61/107 (57.01%), Query Frame = -1
Query:  400 GNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVFLRLNDNRLTGQIPRELVGISSL-KVVDVSSNDLCGTIP 717
            G +NL G + P + KL  L YL +   N+ G IP  L  +K+L++LD   N +SG +PPS++ L +LV +  + NR++G IP      S L   + +S N L G IP
Sbjct:  114 GINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIP 220          
BLAST of CN182096 vs. ExPASy Swiss-Prot
Match: Y5344_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At1g53440 OS=Arabidopsis thaliana GN=At1g53440 PE=1 SV=2)

HSP 1 Score: 74.7146 bits (182), Expect = 5.663e-13
Identity = 50/139 (35.97%), Postives = 76/139 (54.68%), Query Frame = -1
Query:  313 LADLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVFLRLNDNRLTGQIPRELVGISSLKVVDVSSNDLCGTIPTSGPFEHIPLNNFENNPRLEGPELLGLAS 729
            LA  GN  LSG   P+LG++  L  + +  N   G +P  LGNL+SL  L + +NNI+G+IP SL+ LK+L   R++ N L+G+IP  +   + L  +D+    + G IP S       ++N +N   L   +L G  S
Sbjct:  140 LAVTGN-RLSGPFPPQLGQITTLTDVIMESNLFTGQLPPNLGNLRSLKRLLISSNNITGRIPESLSNLKNLTNFRIDGNSLSGKIPDFIGNWTRLVRLDLQGTSMEGPIPAS-------ISNLKNLTELRITDLRGPTS 270          
BLAST of CN182096 vs. ExPASy Swiss-Prot
Match: Y5343_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At1g53430 OS=Arabidopsis thaliana GN=At1g53430 PE=1 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 5.663e-13
Identity = 50/140 (35.71%), Postives = 76/140 (54.29%), Query Frame = -1
Query:  310 LADLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVFLRLNDNRLTGQIPRELVGISSLKVVDVSSNDLCGTIPTSGPFEHIPLNNFENNPRLEGPELLGLASY 729
            L+ +GN  LSG   P+LG +  L  + L  N   G +P  LGNL+SL  L L  NN +G+IP SL+ LK+L   R++ N L+G+IP  +   + L+ +D+    + G IP S       ++N  N   L   +L G A++
Sbjct:  142 LSVIGN-RLSGPFPPQLGDITTLTDVNLETNLFTGPLPRNLGNLRSLKELLLSANNFTGQIPESLSNLKNLTEFRIDGNSLSGKIPDFIGNWTLLERLDLQGTSMEGPIPPS-------ISNLTNLTELRITDLRGQAAF 273          

HSP 2 Score: 71.633 bits (174), Expect = 4.794e-12
Identity = 47/135 (34.81%), Postives = 70/135 (51.85%), Query Frame = -1
Query:  322 LGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVFLRLNDNRLTGQIPRELVGISSLKVVDVSSNDLCGTIPTSGPFEHIPLNNFEN--NPRLEGPELLG 720
            L + +L G   PE G L  L+ ++L +N + GTIP  L  +  L  L +  N +SG  PP L  + +L  + L  N  TG +PR L  + SLK + +S+N+  G IP S       L+N +N    R++G  L G
Sbjct:   97 LKSFSLPGIFPPEFGNLTRLREIDLSRNFLNGTIPTTLSQI-PLEILSVIGNRLSGPFPPQLGDITTLTDVNLETNLFTGPLPRNLGNLRSLKELLLSANNFTGQIPES-------LSNLKNLTEFRIDGNSLSG 223          
BLAST of CN182096 vs. ExPASy Swiss-Prot
Match: Y4374_ARATH (Probable inactive receptor kinase At4g23740 OS=Arabidopsis thaliana GN=At4g23740 PE=1 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 5.663e-13
Identity = 43/108 (39.81%), Postives = 69/108 (63.89%), Query Frame = -1
Query:  400 LGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVFLRLNDNRLTGQIPRELVGISSLKVVDVSSN-DLCGTIP 720
            L ++ +SG    +  +L+ L +L L  NN+ G +P++    K+L S++L NN  +G IP SL++LK +  L L +N L+G IP +L  +SSL+ +D+S+N DL G IP
Sbjct:  100 LRSNLISGEFPKDFVELKDLAFLYLQDNNLSGPLPLDFSVWKNLTSVNLSNNGFNGTIPSSLSRLKRIQSLNLANNTLSGDIP-DLSVLSSLQHIDLSNNYDLAGPIP 206          
BLAST of CN182096 vs. ExPASy Swiss-Prot
Match: Y1561_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At1g56130 OS=Arabidopsis thaliana GN=At1g56130 PE=1 SV=2)

HSP 1 Score: 74.3294 bits (181), Expect = 7.397e-13
Identity = 48/128 (37.50%), Postives = 65/128 (50.78%), Query Frame = -1
Query:  337 LGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVFLRLNDNRLTGQIPRELVGISSLKVVDVSSNDLCGTIPTSGPFEHIPLNNFENNPRLEG 720
            LG+ +     +  +  ++ L  L L  NN+ GTIP  +G   SL  +DL  N + G IP SL  L  L  L L +N L G  P +     SL+ VDVS NDL G++P+      + LN   NN  LEG
Sbjct:  274 LGDISSGSSSLDFIKDMKSLSVLVLRNNNLTGTIPSTIGEHSSLRQVDLSFNKLHGPIPASLFNLSQLTHLFLGNNTLNGSFPTQKT--QSLRNVDVSYNDLSGSLPSWVSLPSLKLNLVANNFTLEG 399          
BLAST of CN182096 vs. ExPASy Swiss-Prot
Match: BRL3_ARATH (Receptor-like protein kinase BRI1-like 3 OS=Arabidopsis thaliana GN=BRL3 PE=1 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 7.397e-13
Identity = 44/110 (40.00%), Postives = 62/110 (56.36%), Query Frame = -1
Query:  328 YLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVFLRLNDNRLTGQIPRELVGISSLKVVDVSSNDLCGTIPTSGPFEHIPLNNFENNPRLEGPEL 657
            YL+L  N + G+IP+  G +  L  L+L +N ++G IP S   LK++  L L+ N L G +P  L G+S L  +DVS+N+L G IP  G     PL  + NN  L G  L
Sbjct:  643 YLDLSYNAVSGSIPLGYGAMGYLQVLNLGHNLLTGTIPDSFGGLKAIGVLDLSHNDLQGFLPGSLGGLSFLSDLDVSNNNLTGPIPFGGQLTTFPLTRYANNSGLCGVPL 752          

HSP 2 Score: 71.633 bits (174), Expect = 4.794e-12
Identity = 44/112 (39.29%), Postives = 64/112 (57.14%), Query Frame = -1
Query:  400 DLGNSNLSGRLVPEL-GKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKS---LVFLRLNDNRLTGQIPRELVGISSLKVVDVSSNDLCGTIP 723
            +LGN+ LSG  +  +  KL  +  L L  NNI G++P+ L N  +L  LDL +N  +G++P     L+S   L  L + +N L+G +P EL    SLK +D+S N L G IP
Sbjct:  332 NLGNNKLSGDFLSTVVSKLSRITNLYLPFNNISGSVPISLTNCSNLRVLDLSSNEFTGEVPSGFCSLQSSSVLEKLLIANNYLSGTVPVELGKCKSLKTIDLSFNALTGLIP 443          

HSP 3 Score: 70.8626 bits (172), Expect = 8.178e-12
Identity = 36/92 (39.13%), Postives = 54/92 (58.70%), Query Frame = -1
Query:  445 LGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVFLRLNDNRLTGQIPRELVGISSL 720
            L N+ L+G L   + K  ++ ++ L  N + G IPV +G L+ L  L L NN+++G IP  L   K+L++L LN N LTG +P EL   + L
Sbjct:  482 LNNNLLTGSLPESISKCTNMLWISLSSNLLTGEIPVGIGKLEKLAILQLGNNSLTGNIPSELGNCKNLIWLDLNSNNLTGNLPGELASQAGL 573          

HSP 4 Score: 67.781 bits (164), Expect = 6.923e-11
Identity = 39/113 (34.51%), Postives = 68/113 (60.18%), Query Frame = -1
Query:  397 DLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIP----VELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVFLRLNDNRLTGQIPRELVGISSLKVVDVSSNDLCGTIPT 723
            DL  + L+G +  E+  L  L  L ++ NN+ G IP    V+ GNL++LI   L NN ++G +P S++K  +++++ L+ N LTG+IP  +  +  L ++ + +N L G IP+
Sbjct:  432 DLSFNALTGLIPKEIWTLPKLSDLVMWANNLTGGIPESICVDGGNLETLI---LNNNLLTGSLPESISKCTNMLWISLSSNLLTGEIPVGIGKLEKLAILQLGNNSLTGNIPS 541          
The following BLAST results are available for this feature:
BLAST of CN182096 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 90
Match NameE-valueIdentityDescription
PGIP_PYRCO1.141e-1343.40Polygalacturonase inhibitor OS=Pyrus communis GN=P... [more]
TMM_ARATH2.542e-1337.69Protein TOO MANY MOUTHS OS=Arabidopsis thaliana GN... [more]
PGIP_VITVI3.320e-1342.06Polygalacturonase inhibitor OS=Vitis vinifera GN=p... [more]
PGIP3_PHAVU3.320e-1338.32Polygalacturonase inhibitor 3 OS=Phaseolus vulgari... [more]
PGIP2_PHAVU3.320e-1338.32Polygalacturonase inhibitor 2 OS=Phaseolus vulgari... [more]
Y5344_ARATH5.663e-1335.97Probable LRR receptor-like serine/threonine-protei... [more]
Y5343_ARATH5.663e-1335.71Probable LRR receptor-like serine/threonine-protei... [more]
Y4374_ARATH5.663e-1339.81Probable inactive receptor kinase At4g23740 OS=Ara... [more]
Y1561_ARATH7.397e-1337.50Probable LRR receptor-like serine/threonine-protei... [more]
BRL3_ARATH7.397e-1340.00Receptor-like protein kinase BRI1-like 3 OS=Arabid... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0001P05_f Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001P05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN182096 ID=CN182096; Name=CN182096; organism=Citrus sinensis; type=EST; length=729bp
TAAGCGTTTGACACATTTAATACTTTTTTATATGGAACTCTCATAGATGG
AATAGAAAACACTTGGCTAGTATTGTATTACATCAATAAAATTCTCATCT
TGAAAGTTGAAACATTTTTATGAAGATCACAACGATGCTATTACAGATGC
ATTTAAGCAGTATAATACAATTTACATATATGATGGCTTCATTTCACCAA
TAACACTATGCTTTTTAGGTAAAGACGCTTTCAATCTTCGCGGACACATC
TATTCGAAACCTGAGTAGAGCTTGAAGCAACAATCAATCGTTTATGAGCA
GTTTGTGTCATAACTTGCAAGTCCCAGCAACTCTGGACCTTCTAATCGAG
GGTTATTCTCAAAGTTGTTGAGTGGGATGTGTTCAAATGGTCCGCTTGTA
GGAATTGTTCCACACAGATCATTGCTTGAAACATCCACAACTTTGAGACT
TGAAATTCCAACAAGTTCCCTGGGAATTTGTCCAGTTAGCCGATTATCGT
TAAGCCGCAAAAAAACAAGAGATTTCAATTTAGCCAAGGAAGGAGGGATT
TTCCCCGAGATGTTGTTATTATACAAGTCCAAGCTGATGAGGCTCTTCAA
GTTACCGAGCTCGACAGGGATAGTTCCTTGGATGTTGTTTTTGTAAAGTT
CCAGGTATTGCAAATGCTCGAGCTTGCCCAGTTCAGGGACGAGACGGCCG
GATAGATTTGAATTACCCAAATCCGCAAG
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