CN182094

Overview
NameCN182094
Unique NameCN182094
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length791
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN182094 vs. ExPASy Swiss-Prot
Match: MEF2D_MOUSE (Myocyte-specific enhancer factor 2D OS=Mus musculus GN=Mef2d PE=1 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 6.913e-15
Identity = 43/86 (50.00%), Postives = 63/86 (73.26%), Query Frame = 2
Query:   11 GRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMLKTLERYQKCNYGAPEPNVSAREA 268
            GR +++++RI ++ NRQVTF KR+ GL+KKAYELSVLCD E+ALIIF++  KL+++ +S+ M K L +Y + N    EP+ S   A
Sbjct:    2 GRKKIQIQRITDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNHSNKLFQY-ASTDMDKVLLKYTEYN----EPHESRTNA 82          
BLAST of CN182094 vs. ExPASy Swiss-Prot
Match: MEF2D_HUMAN (Myocyte-specific enhancer factor 2D OS=Homo sapiens GN=MEF2D PE=1 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 6.913e-15
Identity = 43/86 (50.00%), Postives = 63/86 (73.26%), Query Frame = 2
Query:   11 GRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMLKTLERYQKCNYGAPEPNVSAREA 268
            GR +++++RI ++ NRQVTF KR+ GL+KKAYELSVLCD E+ALIIF++  KL+++ +S+ M K L +Y + N    EP+ S   A
Sbjct:    2 GRKKIQIQRITDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNHSNKLFQY-ASTDMDKVLLKYTEYN----EPHESRTNA 82          
BLAST of CN182094 vs. ExPASy Swiss-Prot
Match: MEF2A_RAT (Myocyte-specific enhancer factor 2A OS=Rattus norvegicus GN=Mef2a PE=1 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 6.913e-15
Identity = 42/95 (44.21%), Postives = 68/95 (71.58%), Query Frame = 2
Query:   11 GRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMLKTLERYQKCNYGAPEPNVSAREALELSSQQEY 295
            GR ++++ RI ++ NRQVTF KR+ GL+KKAYELSVLCD E+ALIIF++  KL+++ +S+ M K L +Y +  Y  P  + +  + +E  +++E+
Sbjct:    2 GRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQY-ASTDMDKVLLKYTE--YNEPHESRTNSDIVEALNKKEH 93          
BLAST of CN182094 vs. ExPASy Swiss-Prot
Match: MEF2A_PIG (Myocyte-specific enhancer factor 2A OS=Sus scrofa GN=MEF2A PE=2 SV=2)

HSP 1 Score: 81.2629 bits (199), Expect = 6.913e-15
Identity = 42/95 (44.21%), Postives = 68/95 (71.58%), Query Frame = 2
Query:   11 GRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMLKTLERYQKCNYGAPEPNVSAREALELSSQQEY 295
            GR ++++ RI ++ NRQVTF KR+ GL+KKAYELSVLCD E+ALIIF++  KL+++ +S+ M K L +Y +  Y  P  + +  + +E  +++E+
Sbjct:    2 GRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQY-ASTDMDKVLLKYTE--YNEPHESGTNSDIVEALNKKEH 93          
BLAST of CN182094 vs. ExPASy Swiss-Prot
Match: MEF2A_HUMAN (Myocyte-specific enhancer factor 2A OS=Homo sapiens GN=MEF2A PE=1 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 6.913e-15
Identity = 42/95 (44.21%), Postives = 68/95 (71.58%), Query Frame = 2
Query:   11 GRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMLKTLERYQKCNYGAPEPNVSAREALELSSQQEY 295
            GR ++++ RI ++ NRQVTF KR+ GL+KKAYELSVLCD E+ALIIF++  KL+++ +S+ M K L +Y +  Y  P  + +  + +E  +++E+
Sbjct:    2 GRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQY-ASTDMDKVLLKYTE--YNEPHESRTNSDIVEALNKKEH 93          
BLAST of CN182094 vs. ExPASy Swiss-Prot
Match: MEF2A_BOVIN (Myocyte-specific enhancer factor 2A OS=Bos taurus GN=MEF2A PE=2 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 6.913e-15
Identity = 42/95 (44.21%), Postives = 68/95 (71.58%), Query Frame = 2
Query:   11 GRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMLKTLERYQKCNYGAPEPNVSAREALELSSQQEY 295
            GR ++++ RI ++ NRQVTF KR+ GL+KKAYELSVLCD E+ALIIF++  KL+++ +S+ M K L +Y +  Y  P  + +  + +E  +++E+
Sbjct:    2 GRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQY-ASTDMDKVLLKYTE--YNEPHESRTNSDIVEALNKKEH 93          
BLAST of CN182094 vs. ExPASy Swiss-Prot
Match: SRFC_DICDI (Serum factor response C OS=Dictyostelium discoideum GN=srfC PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 2.011e-14
Identity = 37/69 (53.62%), Postives = 53/69 (76.81%), Query Frame = 2
Query:   11 GRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMLKTLERY 217
            GR ++ +++I N+ NRQ TF KR+NGL+KKA ELS+LCD E+A+I+FS+  KL+++ SS  M K L RY
Sbjct:    4 GRNKITIEKISNERNRQATFTKRKNGLIKKAMELSILCDCEIAMIVFSSNNKLFQY-SSRDMDKLLIRY 71          
BLAST of CN182094 vs. ExPASy Swiss-Prot
Match: MEF2C_PONAB (Myocyte-specific enhancer factor 2C OS=Pongo abelii GN=MEF2C PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.627e-14
Identity = 39/73 (53.42%), Postives = 57/73 (78.08%), Query Frame = 2
Query:   11 GRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMLKTLERYQKCN 229
            GR ++++ RI ++ NRQVTF KR+ GL+KKAYELSVLCD E+ALIIF++  KL+++ +S+ M K L +Y + N
Sbjct:    2 GRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSTNKLFQY-ASTDMDKVLLKYTEYN 73          
BLAST of CN182094 vs. ExPASy Swiss-Prot
Match: MEF2C_MOUSE (Myocyte-specific enhancer factor 2C OS=Mus musculus GN=Mef2c PE=1 SV=2)

HSP 1 Score: 79.337 bits (194), Expect = 2.627e-14
Identity = 39/73 (53.42%), Postives = 57/73 (78.08%), Query Frame = 2
Query:   11 GRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMLKTLERYQKCN 229
            GR ++++ RI ++ NRQVTF KR+ GL+KKAYELSVLCD E+ALIIF++  KL+++ +S+ M K L +Y + N
Sbjct:    2 GRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSTNKLFQY-ASTDMDKVLLKYTEYN 73          
BLAST of CN182094 vs. ExPASy Swiss-Prot
Match: MEF2C_HUMAN (Myocyte-specific enhancer factor 2C OS=Homo sapiens GN=MEF2C PE=1 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.627e-14
Identity = 39/73 (53.42%), Postives = 57/73 (78.08%), Query Frame = 2
Query:   11 GRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMLKTLERYQKCN 229
            GR ++++ RI ++ NRQVTF KR+ GL+KKAYELSVLCD E+ALIIF++  KL+++ +S+ M K L +Y + N
Sbjct:    2 GRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSTNKLFQY-ASTDMDKVLLKYTEYN 73          
The following BLAST results are available for this feature:
BLAST of CN182094 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 117
Match NameE-valueIdentityDescription
MEF2D_MOUSE6.913e-1550.00Myocyte-specific enhancer factor 2D OS=Mus musculu... [more]
MEF2D_HUMAN6.913e-1550.00Myocyte-specific enhancer factor 2D OS=Homo sapien... [more]
MEF2A_RAT6.913e-1544.21Myocyte-specific enhancer factor 2A OS=Rattus norv... [more]
MEF2A_PIG6.913e-1544.21Myocyte-specific enhancer factor 2A OS=Sus scrofa ... [more]
MEF2A_HUMAN6.913e-1544.21Myocyte-specific enhancer factor 2A OS=Homo sapien... [more]
MEF2A_BOVIN6.913e-1544.21Myocyte-specific enhancer factor 2A OS=Bos taurus ... [more]
SRFC_DICDI2.011e-1453.62Serum factor response C OS=Dictyostelium discoideu... [more]
MEF2C_PONAB2.627e-1453.42Myocyte-specific enhancer factor 2C OS=Pongo abeli... [more]
MEF2C_MOUSE2.627e-1453.42Myocyte-specific enhancer factor 2C OS=Mus musculu... [more]
MEF2C_HUMAN2.627e-1453.42Myocyte-specific enhancer factor 2C OS=Homo sapien... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0001P04_f Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001P04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN182094 ID=CN182094; Name=CN182094; organism=Citrus sinensis; type=EST; length=791bp
GGCCCCCAATGGGAGGGGTAGGGTTGAGTTGAAGAGGATAGAGAACAAGA
TCAACAGGCAAGTGACCTTTGCAAAGAGAAGAAATGGCCTATTGAAGAAA
GCTTATGAGCTTTCCGTTCTTTGTGATGCTGAGGTTGCTCTCATCATTTT
CTCCAATAGAGGAAAGCTGTACGAGTTTTGCAGTAGTTCAAGCATGCTCA
AAACGCTTGAGAGGTACCAGAAGTGCAACTATGGAGCACCAGAACCGAAT
GTGTCCGCAAGGGAGGCCCTGGAGCTAAGTAGCCAGCAAGAATATCTGAA
GCTTAAAGCACGATATGAAGCCCTACAGAGATCCCAAAGGAATCTCCTTG
GAGAAGAACTTGGCCCTCTAAACAGCAAAGAGCTTGAGTCACTTGAAAGG
CAGCTTGATATGTCATTGAAGCAGATCAGATCAACAAGAACTCAGTACAT
GCTGGATACCCTTACTGAACTGCAACATAAGGAACAGTTGCTGAGCGAAG
CAAATAAGACCCTCAAACAAAGGTTGATGGAGGGATACCAAGTGAACACA
CTTCAATTGAATCCTAGTGCAGAAGATTGTGGTTATGGGCTTAAACCAGC
TCAACCTCAGGGCGATACCTTCTTTCACGCCTTGGAATGTGAACCCACAT
TGCAAATTGGATACCAGCCTGCGGACCCAATATCGGTTGTCACAGCAGGC
CCGAGTCTGAATAATTACATGCAAGGATGGCTACCATGCTAAGAGAGCGG
CGGGCATTACCAGTCAATGTATTGCAGTTGATCCATAAGAA
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